mRNA_S-ischiensis_contig9.20458.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20458.1
Unique NamemRNA_S-ischiensis_contig9.20458.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20458.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:531976..532795 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size596
Cds size594
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817364.2997632-CDS-S-ischiensis_contig9:531975..5322141622817364.2997632-CDS-S-ischiensis_contig9:531975..532214Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 531976..532214 +
1695741058.8647676-CDS-S-ischiensis_contig9:531975..5322141695741058.8647676-CDS-S-ischiensis_contig9:531975..532214Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 531976..532214 +
1622817364.3182533-CDS-S-ischiensis_contig9:532438..5327931622817364.3182533-CDS-S-ischiensis_contig9:532438..532793Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 532439..532793 +
1695741058.8767443-CDS-S-ischiensis_contig9:532438..5327931695741058.8767443-CDS-S-ischiensis_contig9:532438..532793Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 532439..532793 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20458.1prot_S-ischiensis_contig9.20458.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 531976..532793 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20458.1

>prot_S-ischiensis_contig9.20458.1 ID=prot_S-ischiensis_contig9.20458.1|Name=mRNA_S-ischiensis_contig9.20458.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=198bp
CRAGAPNKQRASRCRAQRGREAVKRASRVRRAGRSHRLRAPRASAAHGRA
ELARVLLGPQNLRAVAKVTSSTFPLLGSSRPLQGRRRQPRANQKWWRPLG
GREMKCRPRACFQTVATPRTPHHPPRRLHHHLSSSNSSSTTTITTPSDRR
RPLMPTWATCATDGQTAGPCGGTRSCPGPGWRSPCCAWMALSYSRGRR
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mRNA from alignment at S-ischiensis_contig9:531976..532795+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20458.1 ID=mRNA_S-ischiensis_contig9.20458.1|Name=mRNA_S-ischiensis_contig9.20458.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=820bp|location=Sequence derived from alignment at S-ischiensis_contig9:531976..532795+ (Schizocladia ischiensis KU_0333)
TGCAGGGCTGGCGCGCCGAACAAACAGAGGGCGAGCAGATGCCGGGCTCA
AAGAGGACGAGAAGCAGTGAAGCGGGCCTCAAGAGTGAGGAGAGCGGGAA
GGAGCCACCGCCTCCGGGCCCCTCGGGCATCGGCGGCCCATGGCCGCGCC
GAGCTCGCGCGGGTGCTCCTCGGGCCCCAGAATCTACGAGCAGTTGCGAA
AGTAACGAGTTCGACATTTCCTCTGCTGGGAAGCTCGAGGTGCGACCGCG
TACGCATATAAATATGACATGTCTGCAATGCGGCACGGGTACCAAAGATC
AGCTTGAGGTGTGCACACCTGCCCAGTACTTGAAGAGGCACTCGAATACA
ACCTTACACAGTGCAGGGGGGGGTAAAGGGGGAGCATACACCACAAGGAT
TGTGCGTCCGTCATCTCCGACGCCCTGATCCGCCGCCACCAACTCAACGC
ACACCGTTCACAGGCCACTCCAGGGCAGGAGGCGCCAGCCTCGGGCGAAT
CAGAAGTGGTGGCGCCCACTGGGGGGGAGGGAGATGAAATGCAGGCCCAG
GGCCTGTTTTCAGACAGTTGCGACGCCTCGGACACCACACCACCCCCCTC
GACGCCTCCACCACCACCTGAGCAGCAGCAACAGCAGCAGCACCACCACC
ATCACCACCCCGAGCGACCGGCGCCGGCCGCTCATGCCTACCTGGGCGAC
CTGCGCGACGGATGGACAGACGGCGGGGCCGTGCGGGGGGACCAGGTCGT
GCCCGGGGCCCGGCTGGAGATCCCCGTGCTGTGCCTGGATGGCGTTGTCT
TATTCCCGGGGGAGACGGTG
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:531976..532795+

>mRNA_S-ischiensis_contig9.20458.1 ID=mRNA_S-ischiensis_contig9.20458.1|Name=mRNA_S-ischiensis_contig9.20458.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1188bp|location=Sequence derived from alignment at S-ischiensis_contig9:531976..532795+ (Schizocladia ischiensis KU_0333)
TGCAGGGCTGGCGCGCCGAACAAACAGAGGGCGAGCAGATGCCGGGCTCA
AAGAGGACGAGAAGCAGTGAAGCGGGCCTCAAGAGTGAGGAGAGCGGGAA
GGAGCCACCGCCTCCGGGCCCCTCGGGCATCGGCGGCCCATGGCCGCGCC
GAGCTCGCGCGGGTGCTCCTCGGGCCCCAGAATCTACGAGCAGTTGCGAA
AGTAACGAGTTCGACATTTCCTCTGCTGGGAAGCTCGAGTGCAGGGCTGG
CGCGCCGAACAAACAGAGGGCGAGCAGATGCCGGGCTCAAAGAGGACGAG
AAGCAGTGAAGCGGGCCTCAAGAGTGAGGAGAGCGGGAAGGAGCCACCGC
CTCCGGGCCCCTCGGGCATCGGCGGCCCATGGCCGCGCCGAGCTCGCGCG
GGTGCTCCTCGGGCCCCAGAATCTACGAGCAGTTGCGAAAGTAACGAGTT
CGACATTTCCTCTGCTGGGAAGCTCGAGGCCACTCCAGGGCAGGAGGCGC
CAGCCTCGGGCGAATCAGAAGTGGTGGCGCCCACTGGGGGGGAGGGAGAT
GAAATGCAGGCCCAGGGCCTGTTTTCAGACAGTTGCGACGCCTCGGACAC
CACACCACCCCCCTCGACGCCTCCACCACCACCTGAGCAGCAGCAACAGC
AGCAGCACCACCACCATCACCACCCCGAGCGACCGGCGCCGGCCGCTCAT
GCCTACCTGGGCGACCTGCGCGACGGATGGACAGACGGCGGGGCCGTGCG
GGGGGACCAGGTCGTGCCCGGGGCCCGGCTGGAGATCCCCGTGCTGTGCC
TGGATGGCGTTGTCTTATTCCCGGGGGAGACGGGCCACTCCAGGGCAGGA
GGCGCCAGCCTCGGGCGAATCAGAAGTGGTGGCGCCCACTGGGGGGGAGG
GAGATGAAATGCAGGCCCAGGGCCTGTTTTCAGACAGTTGCGACGCCTCG
GACACCACACCACCCCCCTCGACGCCTCCACCACCACCTGAGCAGCAGCA
ACAGCAGCAGCACCACCACCATCACCACCCCGAGCGACCGGCGCCGGCCG
CTCATGCCTACCTGGGCGACCTGCGCGACGGATGGACAGACGGCGGGGCC
GTGCGGGGGGACCAGGTCGTGCCCGGGGCCCGGCTGGAGATCCCCGTGCT
GTGCCTGGATGGCGTTGTCTTATTCCCGGGGGAGACGG
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