mRNA_S-ischiensis_contig9.20450.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20450.1
Unique NamemRNA_S-ischiensis_contig9.20450.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20450.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:514043..514622 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size246
Cds size243
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817364.1101048-CDS-S-ischiensis_contig9:514044..5141821622817364.1101048-CDS-S-ischiensis_contig9:514044..514182Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 514045..514182 -
1695741058.7475758-CDS-S-ischiensis_contig9:514044..5141821695741058.7475758-CDS-S-ischiensis_contig9:514044..514182Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 514045..514182 -
1622817364.122205-CDS-S-ischiensis_contig9:514517..5146221622817364.122205-CDS-S-ischiensis_contig9:514517..514622Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 514518..514622 -
1695741058.7578175-CDS-S-ischiensis_contig9:514517..5146221695741058.7578175-CDS-S-ischiensis_contig9:514517..514622Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 514518..514622 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20450.1prot_S-ischiensis_contig9.20450.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 514045..514622 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20450.1

>prot_S-ischiensis_contig9.20450.1 ID=prot_S-ischiensis_contig9.20450.1|Name=mRNA_S-ischiensis_contig9.20450.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=81bp
PPVRLAFERVLYPFLLDITNYYAGVAYEDAPRASSPGAPPLNPLASGGTV
LIKGFPCQRRSECAMVRRVVRGILERLLLNT
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mRNA from alignment at S-ischiensis_contig9:514043..514622-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20450.1 ID=mRNA_S-ischiensis_contig9.20450.1|Name=mRNA_S-ischiensis_contig9.20450.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=580bp|location=Sequence derived from alignment at S-ischiensis_contig9:514043..514622- (Schizocladia ischiensis KU_0333)
CCCCCCGTTCGCCTGGCCTTTGAGCGTGTGCTCTACCCCTTCCTCTTGGA
CATCACCAACTACTACGCGGGGGTGGCCTACGAGGATGCCCCGCGAGCCT
CCTCGGTGGGTGATTCTATAAATTGCAACGAGGTACAATCGCACATGTGT
GAGATGGTGTGTTTCGTATTAGTGGTTATCCCATTCAAGAGTTGAGTGCT
ATCATAGTAGTCATTGTCGGTGGGTCTAGATTGGTTGAGAATGTGTTTAG
GCCCTTGCGTTTCCCAATGTAGTATGTTGGTCATGTGCCACTTACTTGCA
TACTGTACCACAGTCAGTACTGCACAACTCTACTGTACACAGCACAACCA
TGAAGTACTATCTCAATCTTCTTTCTTGCAGAGCTCTCACCCACGTCACC
ACCACCCCCGCCAACCTCCCCTCACCTTCCCCCCCCGCAGCCCGGCGCCC
CCCCCCTCAACCCCCTCGCCAGCGGCGGCACCGTCCTCATCAAGGGCTTC
CCCTGCCAACGCCGCTCAGAGTGCGCCATGGTAAGGCGTGTGGTGCGGGG
CATCCTCGAACGCCTCCTCCTCAACACCCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:514043..514622-

>mRNA_S-ischiensis_contig9.20450.1 ID=mRNA_S-ischiensis_contig9.20450.1|Name=mRNA_S-ischiensis_contig9.20450.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=486bp|location=Sequence derived from alignment at S-ischiensis_contig9:514043..514622- (Schizocladia ischiensis KU_0333)
CCCCCCGTTCGCCTGGCCTTTGAGCGTGTGCTCTACCCCTTCCTCTTGGA
CATCACCAACTACTACGCGGGGGTGGCCTACGAGGATGCCCCGCGAGCCT
CCTCGCCCCCCGTTCGCCTGGCCTTTGAGCGTGTGCTCTACCCCTTCCTC
TTGGACATCACCAACTACTACGCGGGGGTGGCCTACGAGGATGCCCCGCG
AGCCTCCTCGCCCGGCGCCCCCCCCCTCAACCCCCTCGCCAGCGGCGGCA
CCGTCCTCATCAAGGGCTTCCCCTGCCAACGCCGCTCAGAGTGCGCCATG
GTAAGGCGTGTGGTGCGGGGCATCCTCGAACGCCTCCTCCTCAACACCCC
CGGCGCCCCCCCCCTCAACCCCCTCGCCAGCGGCGGCACCGTCCTCATCA
AGGGCTTCCCCTGCCAACGCCGCTCAGAGTGCGCCATGGTAAGGCGTGTG
GTGCGGGGCATCCTCGAACGCCTCCTCCTCAACACC
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