mRNA_S-ischiensis_contig9.20449.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig9.20449.1 vs. uniprot
Match: A0A2V0P992_9CHLO (DNA-directed DNA polymerase n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P992_9CHLO) HSP 1 Score: 101 bits (252), Expect = 1.010e-21 Identity = 53/98 (54.08%), Postives = 67/98 (68.37%), Query Frame = 2
Query: 59 HVALAQRLQRRDRERVFLLGERVPYVLLAGVQGMTQSDKAEDPAVALAAGAAPDTWLYWTNKLKPPLERILQHVLSESELQRVLSGEHTQARAVTVSG 352
H ALA RL +RD +R F+LGER+PYVLLAG + Q D AEDP AL G AP+T LYW NKL PPL IL++VL+ ++ Q + SG HT+ R +G
Sbjct: 1036 HAALAVRLTQRDPDRCFVLGERLPYVLLAGEK--KQDDMAEDPLTALQQGRAPNTELYWKNKLMPPLMEILKYVLTPAQQQHLASGPHTRVRGPGTAG 1131
BLAST of mRNA_S-ischiensis_contig9.20449.1 vs. uniprot
Match: A0A087STD6_AUXPR (DNA-directed DNA polymerase n=4 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087STD6_AUXPR) HSP 1 Score: 88.6 bits (218), Expect = 3.550e-17 Identity = 51/109 (46.79%), Postives = 65/109 (59.63%), Query Frame = 2
Query: 20 PAAAAASASPDQVHVALAQRLQRRDRERVFLLGERVPYVLLAGVQGMTQSDKAEDPAVALAAGAAPDTWLYWTNKLKPPLERILQHVLSESELQRVLSGEHTQARAVTV 346
PAAAA P H +LA RL +RD R F+LGER+PYVLLAG Q D AEDP +A+ +G D LYW NKL PL +L H + + +Q ++ G HT+ R V
Sbjct: 794 PAAAAEVRGP---HASLAVRLVQRDPGRAFVLGERLPYVLLAGAP--KQDDAAEDPVMAVRSGTRADYLLYWNNKLVRPLSEMLGHCMPPARVQALMQGAHTRVRVEEV 897
BLAST of mRNA_S-ischiensis_contig9.20449.1 vs. uniprot
Match: A0A1Y1HM97_KLENI (DNA-directed DNA polymerase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HM97_KLENI) HSP 1 Score: 87.8 bits (216), Expect = 6.690e-17 Identity = 44/89 (49.44%), Postives = 62/89 (69.66%), Query Frame = 2
Query: 59 HVALAQRLQRRDRERVFLLGERVPYVLLAGVQGMTQSDKAEDPAVALAAGAAPDTWLYWTNKLKPPLERILQHVLSESELQRVLSGEHT 325
HV+LA RL+RRD +R F +GER+PYVL++G +G Q D AEDP A G AP+ +Y NKL+ PLE I ++V+S+ L+ + +G HT
Sbjct: 1096 HVSLAVRLKRRDGDRQFHIGERIPYVLVSG-RGKLQDDMAEDPVEAARRGLAPNIGVYLENKLRKPLESIFEYVVSDKVLRELFTGPHT 1183
BLAST of mRNA_S-ischiensis_contig9.20449.1 vs. uniprot
Match: A0A383VUF3_TETOB (DNA-directed DNA polymerase n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VUF3_TETOB) HSP 1 Score: 86.7 bits (213), Expect = 1.690e-16 Identity = 44/97 (45.36%), Postives = 66/97 (68.04%), Query Frame = 2
Query: 59 HVALAQRLQRRDRERVFLLGERVPYVLLAGVQGMTQSDKAEDPAVALAAGAAPDTWLYWTNKLKPPLERILQHVLSESELQRVLSGEHTQARAVTVS 349
H +LA RL +RD ++ +LLGER+PYVLL G + TQ + AEDP A G +P+ LY+TNKL+ PL+ I L+ +++++L G+HT+ RA T +
Sbjct: 1020 HASLAVRLSQRDPDKKWLLGERLPYVLLTGAR--TQDEAAEDPLTAAQLGVSPNYELYFTNKLQIPLKEIFSTCLNPEQMRQLLHGDHTKFRASTTT 1114
BLAST of mRNA_S-ischiensis_contig9.20449.1 vs. uniprot
Match: A0A7J7PSD8_9CHLO (DNA-directed DNA polymerase n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PSD8_9CHLO) HSP 1 Score: 86.3 bits (212), Expect = 2.280e-16 Identity = 44/97 (45.36%), Postives = 66/97 (68.04%), Query Frame = 2
Query: 59 HVALAQRLQRRDRERVFLLGERVPYVLLAGVQGMTQSDKAEDPAVALAAGAAPDTWLYWTNKLKPPLERILQHVLSESELQRVLSGEHTQARAVTVS 349
H +LA RL +RD ++ +LLGER+PYVLL G + TQ + AEDP A G +P+ LY+TNKL+ PL+ I L+ +++++L G+HT+ RA T +
Sbjct: 942 HASLAVRLSQRDPDKKWLLGERLPYVLLTGAR--TQDEAAEDPLTAAQLGVSPNYELYFTNKLQIPLKEIFVTCLNPDQMRQLLHGDHTKLRASTTT 1036
BLAST of mRNA_S-ischiensis_contig9.20449.1 vs. uniprot
Match: UPI001F04CADE (DNA polymerase delta catalytic subunit-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F04CADE) HSP 1 Score: 84.7 bits (208), Expect = 7.690e-16 Identity = 55/158 (34.81%), Postives = 78/158 (49.37%), Query Frame = 2
Query: 44 SPDQVHVALAQRLQRRDRERVFLLGERVPYVLLAGVQGMTQSDKAEDPAVALAAGAAPDTWLYWTNKLKPPLERILQHVLSESELQRVL-SGEHTQARAVTVSGXXXXXXXXXXXXXXXXXXXGQGITGFMTVQRSWTCLLCRELTDTPAPVCQPCQS 514
S Q H LA+R+++RD LG+RVPYV++AG +GM KAEDP L DT Y N+L PL RI + +L E + + +L GEHT+ + V S G F +RS TC+ C+ + D + VC+ C+S
Sbjct: 864 SAKQAHSELAERMRKRDAGSAPKLGDRVPYVIIAGAKGMAAYQKAEDPIYVLENNIPIDTSYYLENQLTNPLLRIFEPILGEDKAKSILFKGEHTRTKTVIASSI--------------------GKLAFFAKKRS-TCIGCKTVLDDDSAVCKHCKS 1000
BLAST of mRNA_S-ischiensis_contig9.20449.1 vs. uniprot
Match: A0A7S3QKT1_DUNTE (DNA-directed DNA polymerase (Fragment) n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3QKT1_DUNTE) HSP 1 Score: 80.5 bits (197), Expect = 2.580e-15 Identity = 44/84 (52.38%), Postives = 56/84 (66.67%), Query Frame = 2
Query: 59 HVALAQRLQRRDRERVFLLGERVPYVLLAGVQGMTQSDKAEDPAVALAAGAAPDTWLYWTNKLKPPLERILQHVLSESELQRVL 310
H ALA +L +RD R FLLGERVPYVLL+G + Q + AEDP +A G P+ LY+ NKLK PLE I+Q VL +EL ++
Sbjct: 148 HAALAIKLAQRDPHRPFLLGERVPYVLLSGFR--LQDEAAEDPLLASEIGLVPNLDLYYHNKLKVPLEEIMQKVLKPTELNHLM 229
BLAST of mRNA_S-ischiensis_contig9.20449.1 vs. uniprot
Match: A0A061RRR4_9CHLO (DNA-directed DNA polymerase (Fragment) n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RRR4_9CHLO) HSP 1 Score: 80.9 bits (198), Expect = 7.850e-15 Identity = 46/97 (47.42%), Postives = 58/97 (59.79%), Query Frame = 2
Query: 59 HVALAQRLQRRDRERVFLLGERVPYVLLAGVQGMTQSDKAEDPAVALAAGAAPDTWLYWTNKLKPPLERILQHVLSESELQRVLSGEHTQARAVTVS 349
H LA RL RRD R F+LGER+PYVL++G + Q + AEDP A AG D LY TNKL P L +LQ +LS +L+ G+HT+ A S
Sbjct: 94 HANLAVRLCRRDEGRSFVLGERIPYVLISGSRN--QDEAAEDPVHAALAGLPLDLRLYCTNKLMPVLREVLQFILSRQQLKEFDMGDHTRVVAARQS 188
BLAST of mRNA_S-ischiensis_contig9.20449.1 vs. uniprot
Match: UPI0006B7FE4C (DNA polymerase delta catalytic subunit n=1 Tax=Pseudopodoces humilis TaxID=181119 RepID=UPI0006B7FE4C) HSP 1 Score: 80.1 bits (196), Expect = 2.920e-14 Identity = 58/162 (35.80%), Postives = 81/162 (50.00%), Query Frame = 2
Query: 29 AAASASPDQVHVALAQRLQRRDRERVFLLGERVPYVLLAGVQGMTQSDKAEDPAVALAAGAAPDTWLYWTNKLKPPLERILQHVLSESELQRVL-SGEHTQARAVTVSGXXXXXXXXXXXXXXXXXXXGQGITGFMTVQRSWTCLLCRELTDTPAPVCQPCQ 511
AA++ S Q HVALA+RL+RRD LG+RVPYV+++G +G ++EDP AL DT Y +L PL RI + +L E Q VL GEHT+ + + S G++ F T +RS +C+ CR L VC C+
Sbjct: 532 AASAYSAPQAHVALAERLRRRDPGSAPSLGDRVPYVIVSGARGQAAYTRSEDPVFALEQNLPIDTRYYLEQQLSRPLLRIFEPILGEGRAQAVLLQGEHTRCKTLLTS-------------------KSGGLSAF-TSKRS-SCVGCRALLPHHGAVCDFCR 672
BLAST of mRNA_S-ischiensis_contig9.20449.1 vs. uniprot
Match: A0A7D9II34_PARCT (DNA-directed DNA polymerase n=4 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9II34_PARCT) HSP 1 Score: 79.7 bits (195), Expect = 2.940e-14 Identity = 44/103 (42.72%), Postives = 59/103 (57.28%), Query Frame = 2
Query: 44 SPDQVHVALAQRLQRRDRERVFLLGERVPYVLLAGVQGMTQSDKAEDPAVALAAGAAPDTWLYWTNKLKPPLERILQHVLSESELQRVL-SGEHTQARAVTVS 349
S Q H LA+R+++RD LG+RVPYV++AG +GM KAEDP L DT Y N+L PL RI + +L E + + VL GEHT+ + V S
Sbjct: 282 SAKQAHSELAERMRKRDAGSAPKLGDRVPYVIIAGAKGMAAYQKAEDPIYVLENNVPIDTTYYLENQLTNPLMRIFEPILGEDKAKSVLFKGEHTRTKTVVTS 384 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20449.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig9.20449.1 >prot_S-ischiensis_contig9.20449.1 ID=prot_S-ischiensis_contig9.20449.1|Name=mRNA_S-ischiensis_contig9.20449.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=180bp WGHVGAAGGGGGVCVAGSGPRCSGPATAEEGSGTCFLAGGACPLRAAGGGback to top mRNA from alignment at S-ischiensis_contig9:510937..513506- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig9.20449.1 ID=mRNA_S-ischiensis_contig9.20449.1|Name=mRNA_S-ischiensis_contig9.20449.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2570bp|location=Sequence derived from alignment at S-ischiensis_contig9:510937..513506- (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig9:510937..513506- >mRNA_S-ischiensis_contig9.20449.1 ID=mRNA_S-ischiensis_contig9.20449.1|Name=mRNA_S-ischiensis_contig9.20449.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1080bp|location=Sequence derived from alignment at S-ischiensis_contig9:510937..513506- (Schizocladia ischiensis KU_0333)back to top |