mRNA_S-ischiensis_contig9.20441.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20441.1
Unique NamemRNA_S-ischiensis_contig9.20441.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20441.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:438143..438513 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size373
Cds size342
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817370.6347587-UTR-S-ischiensis_contig9:438142..4381711622817370.6347587-UTR-S-ischiensis_contig9:438142..438171Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 438143..438171 +
1695741062.9609337-UTR-S-ischiensis_contig9:438142..4381711695741062.9609337-UTR-S-ischiensis_contig9:438142..438171Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 438143..438171 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817370.6455138-CDS-S-ischiensis_contig9:438171..4385131622817370.6455138-CDS-S-ischiensis_contig9:438171..438513Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 438172..438513 +
1695741062.9815564-CDS-S-ischiensis_contig9:438171..4385131695741062.9815564-CDS-S-ischiensis_contig9:438171..438513Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 438172..438513 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20441.1prot_S-ischiensis_contig9.20441.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 438172..438513 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20441.1

>prot_S-ischiensis_contig9.20441.1 ID=prot_S-ischiensis_contig9.20441.1|Name=mRNA_S-ischiensis_contig9.20441.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=114bp
MDSMEVAGGSGGGGGGFGPEEPEEPEGGSRGGDDGRRVGRGPGLASLLAR
GTQALPAGARRWRAGQAPLQPPGPEPWGPGPAIMPRAHTLAKPSAETGPT
HEEESSSAKGAVAA
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mRNA from alignment at S-ischiensis_contig9:438143..438513+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20441.1 ID=mRNA_S-ischiensis_contig9.20441.1|Name=mRNA_S-ischiensis_contig9.20441.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=371bp|location=Sequence derived from alignment at S-ischiensis_contig9:438143..438513+ (Schizocladia ischiensis KU_0333)
GCAGTGACGACAGTGTTGGCGGTCGTGCCATGGATTCCATGGAGGTTGCC
GGCGGCAGCGGCGGCGGCGGTGGCGGCTTTGGGCCGGAGGAGCCGGAGGA
GCCGGAGGGCGGCAGCCGAGGCGGCGACGATGGAAGGCGTGTGGGGCGGG
GCCCGGGGCTGGCCTCCCTGCTGGCACGAGGCACCCAGGCACTGCCGGCC
GGGGCCCGGCGCTGGCGGGCAGGACAGGCCCCCCTGCAGCCCCCGGGCCC
AGAGCCGTGGGGTCCAGGCCCGGCGATAATGCCCCGGGCCCACACTTTGG
CCAAACCCAGTGCCGAGACGGGGCCCACGCATGAAGAAGAATCGTCTTCC
GCGAAGGGCGCGGTGGCAGCG
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:438143..438513+

>mRNA_S-ischiensis_contig9.20441.1 ID=mRNA_S-ischiensis_contig9.20441.1|Name=mRNA_S-ischiensis_contig9.20441.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=684bp|location=Sequence derived from alignment at S-ischiensis_contig9:438143..438513+ (Schizocladia ischiensis KU_0333)
ATGGATTCCATGGAGGTTGCCGGCGGCAGCGGCGGCGGCGGTGGCGGCTT
TGGGCCGGAGGAGCCGGAGGAGCCGGAGGGCGGCAGCCGAGGCGGCGACG
ATGGAAGGCGTGTGGGGCGGGGCCCGGGGCTGGCCTCCCTGCTGGCACGA
GGCACCCAGGCACTGCCGGCCGGGGCCCGGCGCTGGCGGGCAGGACAGGC
CCCCCTGCAGCCCCCGGGCCCAGAGCCGTGGGGTCCAGGCCCGGCGATAA
TGCCCCGGGCCCACACTTTGGCCAAACCCAGTGCCGAGACGGGGCCCACG
CATGAAGAAGAATCGTCTTCCGCGAAGGGCGCGGTGGCAGCGATGGATTC
CATGGAGGTTGCCGGCGGCAGCGGCGGCGGCGGTGGCGGCTTTGGGCCGG
AGGAGCCGGAGGAGCCGGAGGGCGGCAGCCGAGGCGGCGACGATGGAAGG
CGTGTGGGGCGGGGCCCGGGGCTGGCCTCCCTGCTGGCACGAGGCACCCA
GGCACTGCCGGCCGGGGCCCGGCGCTGGCGGGCAGGACAGGCCCCCCTGC
AGCCCCCGGGCCCAGAGCCGTGGGGTCCAGGCCCGGCGATAATGCCCCGG
GCCCACACTTTGGCCAAACCCAGTGCCGAGACGGGGCCCACGCATGAAGA
AGAATCGTCTTCCGCGAAGGGCGCGGTGGCAGCG
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