mRNA_S-ischiensis_contig9.20431.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20431.1
Unique NamemRNA_S-ischiensis_contig9.20431.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20431.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:418258..419422 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size231
Cds size228
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817363.6007504-CDS-S-ischiensis_contig9:418257..4183521622817363.6007504-CDS-S-ischiensis_contig9:418257..418352Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 418258..418352 +
1695741058.4567206-CDS-S-ischiensis_contig9:418257..4183521695741058.4567206-CDS-S-ischiensis_contig9:418257..418352Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 418258..418352 +
1622817363.6161182-CDS-S-ischiensis_contig9:419287..4194201622817363.6161182-CDS-S-ischiensis_contig9:419287..419420Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 419288..419420 +
1695741058.4664328-CDS-S-ischiensis_contig9:419287..4194201695741058.4664328-CDS-S-ischiensis_contig9:419287..419420Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 419288..419420 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20431.1prot_S-ischiensis_contig9.20431.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 418258..419420 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20431.1

>prot_S-ischiensis_contig9.20431.1 ID=prot_S-ischiensis_contig9.20431.1|Name=mRNA_S-ischiensis_contig9.20431.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=76bp
CSGGSGNNSQDGEDSSEETAIAKRVGGRHRKTSARYQQFKTNQLIRERTG
KRTVEYMEADGVSDKLDSSAVSTPRA
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mRNA from alignment at S-ischiensis_contig9:418258..419422+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20431.1 ID=mRNA_S-ischiensis_contig9.20431.1|Name=mRNA_S-ischiensis_contig9.20431.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1165bp|location=Sequence derived from alignment at S-ischiensis_contig9:418258..419422+ (Schizocladia ischiensis KU_0333)
TGTAGCGGAGGGAGTGGGAATAATAGCCAGGACGGGGAGGACTCATCAGA
AGAGACCGCCATCGCCAAGCGGGTGGGGGGGCGGCACAGAAAAACGTGAG
TGCCCGGTAGGCGTCTACCAACCAAGCATATATATGTACTCACGGTGCTT
GCCGTAGTCCCGAGACCATTGACCACGCGCCTCTGTTGAGACGGAGCAAT
ATGCAGGGCTTGTGTGCAGCTGTGTGCCTTTCCGCTGCCTCGTTTGGAAA
TTTCGCGCCGGTTTGGTTCTGTTCGTGGTGGCGGCACCGGCCGGCCGGGG
TGTGTGTGTGTGGGGGGCTGTACACCTTGGTTGTGTGTGTGTTGTGTGTT
GTGCCTGAGTACTGTACCTTCTGTACTGTACTGTACTGTACTGTGCTGTG
CTGCTCTGTCTTGTCGCTTGTGGTTCCGCGGATACTTCGCCGAGGGCCCG
CGCTGTATTAATGCATCAAACGAGTGATGATGTGATGTGATGTGATGTGT
ACTCCAAGGTACTTTAGATTGACATCACATCACATCACACCACACCACAC
CGCAATGGGTGACAGGGGATGCGCCGGTGCTTCCTCCCCTCCCACGCTTG
CCCTCTGCGGTGACCGACCCTTCCTCCCCCTGCGCTCCCTCCCCTCCGGC
CTACCTCCCCCCCCTCCTTCCCTCCCTCCCTCCCAGTCCCACCCCCCTCG
CTCCCTCCCTCCCCCCCGCGCCTCCTCCCTCCCCCCCTCCCTTCCCCCCC
TTCCCCCCTCTTCCCCTCCCGGCCTGCCCCCTCCCTCCCCCTCCCTCCCT
GTTCCCGTCCCGCTCTGGCTTGTAGAGTTCTGTATTGAACAACATATCGA
TTGATGACATATATATGAACTCCCGTGGTGCTTGCCGTAGTCCCGAGACC
ATTGATCACGCGCCTCGGTCGAGACTGAGCAGATGCTGAAAAACTATTGA
ATATTGATATTATGATGATTTTCAGCGCCAATACAGAACTCTACTGACTT
TGCCCCTCTCCCTCTCGGGGTGGTCCGCAGGAGCGCCAGGTACCAGCAGT
TCAAGACCAACCAGCTCATCCGCGAGCGGACAGGCAAACGCACCGTGGAG
TACATGGAGGCGGATGGCGTTTCCGACAAGCTGGACAGCTCCGCTGTGTC
CACGCCCCGGGCGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:418258..419422+

>mRNA_S-ischiensis_contig9.20431.1 ID=mRNA_S-ischiensis_contig9.20431.1|Name=mRNA_S-ischiensis_contig9.20431.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=456bp|location=Sequence derived from alignment at S-ischiensis_contig9:418258..419422+ (Schizocladia ischiensis KU_0333)
TGTAGCGGAGGGAGTGGGAATAATAGCCAGGACGGGGAGGACTCATCAGA
AGAGACCGCCATCGCCAAGCGGGTGGGGGGGCGGCACAGAAAAACTGTAG
CGGAGGGAGTGGGAATAATAGCCAGGACGGGGAGGACTCATCAGAAGAGA
CCGCCATCGCCAAGCGGGTGGGGGGGCGGCACAGAAAAACGAGCGCCAGG
TACCAGCAGTTCAAGACCAACCAGCTCATCCGCGAGCGGACAGGCAAACG
CACCGTGGAGTACATGGAGGCGGATGGCGTTTCCGACAAGCTGGACAGCT
CCGCTGTGTCCACGCCCCGGGCGGAGCGCCAGGTACCAGCAGTTCAAGAC
CAACCAGCTCATCCGCGAGCGGACAGGCAAACGCACCGTGGAGTACATGG
AGGCGGATGGCGTTTCCGACAAGCTGGACAGCTCCGCTGTGTCCACGCCC
CGGGCG
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