mRNA_S-ischiensis_contig9.20427.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20427.1
Unique NamemRNA_S-ischiensis_contig9.20427.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20427.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:393101..394536 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1436
Cds size741
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20427.1prot_S-ischiensis_contig9.20427.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 393618..394358 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817370.4513938-UTR-S-ischiensis_contig9:393100..3936171622817370.4513938-UTR-S-ischiensis_contig9:393100..393617Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 393101..393617 +
1695741062.8796628-UTR-S-ischiensis_contig9:393100..3936171695741062.8796628-UTR-S-ischiensis_contig9:393100..393617Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 393101..393617 +
1622817370.4746947-UTR-S-ischiensis_contig9:394358..3945361622817370.4746947-UTR-S-ischiensis_contig9:394358..394536Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 394359..394536 +
1695741062.9040837-UTR-S-ischiensis_contig9:394358..3945361695741062.9040837-UTR-S-ischiensis_contig9:394358..394536Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 394359..394536 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817370.4640985-CDS-S-ischiensis_contig9:393617..3943581622817370.4640985-CDS-S-ischiensis_contig9:393617..394358Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 393618..394358 +
1695741062.892091-CDS-S-ischiensis_contig9:393617..3943581695741062.892091-CDS-S-ischiensis_contig9:393617..394358Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 393618..394358 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20427.1

>prot_S-ischiensis_contig9.20427.1 ID=prot_S-ischiensis_contig9.20427.1|Name=mRNA_S-ischiensis_contig9.20427.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=247bp
MGLGALVDPVRLAACRQGHIDFSCGYNFVLPGGRARWPPRASACGQGRDR
TVVHVWRCPAAGRLQAGRANLLWASGPAPGRPGGRACACEGGGSVRGWWR
HPATGDLQAGQANLLWAPGPASGHLWGGRACACEGDGSVLVRAWWRHAAT
GQHLRAGRADLLWAAGPAPRRPNGRACACEGDGSVRVRAWWRRPATGCLR
AGRGHLLWAPGPAPPGRPGGRACACGGPDGVGRSCWDRLRCCPWGQ*
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mRNA from alignment at S-ischiensis_contig9:393101..394536+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20427.1 ID=mRNA_S-ischiensis_contig9.20427.1|Name=mRNA_S-ischiensis_contig9.20427.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1436bp|location=Sequence derived from alignment at S-ischiensis_contig9:393101..394536+ (Schizocladia ischiensis KU_0333)
TTTTGTACCATGGCTACAGGAGAGGGAACAGAGGAGGGAGCGACAGAGGA
ACTCCAAGCGCCGACAACGCGAACGCGAGCGTTGCGCACACGACCGAGAA
GAGAAGAGGCAACGGCGGGGGCCGGGCGGGCCGAGGAGCGAGCTTGGTAA
CCAGCCCCGGGCCACCCGCCGCCCCGACTCCCCGACACGAACGCCTGCCA
CCGCGGATGGGGAAGAGAAGAGGCAACGGCGGGAGCTGCGCGGGCCGAGC
AAGCTTGGTAAGCAGCCCCAGGCCCCCAGCCCCGGGCGCCACTCCCCCGC
GCGAACGCCTCCCACTGTGGATGGGGAGGAGCGGGGGGGCGCGCGTGAAG
ATCCCCACCCACGGCGATTCGTACTACCTCTTTACGAGTACAATTTGTGT
GAATCACCTCACCCACGGGGCACCTGCAGGCCGGGCGAGCTTACTTGTAC
GTGCAGCGAGCCCCAGCCGCCGCCCCCCCCGGGCGCCGCAGCGGGCGCGC
CACCTGCCGAGCAGGTGATGGGGCTGGGCGCGCTTGTAGATCCCGTGCGA
CTTGCCGCCTGCAGGCAGGGCCATATTGATTTTTCTTGCGGTTACAACTT
TGTACTCCCGGGAGGACGCGCCCGGTGGCCCCCTCGTGCAAGTGCCTGCG
GACAAGGTAGAGATAGAACAGTTGTGCACGTGTGGAGATGCCCTGCGGCT
GGGCGCTTGCAGGCAGGGCGAGCGAACCTGCTGTGGGCCTCAGGGCCCGC
ACCCGGGCGCCCAGGTGGAAGGGCCTGTGCCTGCGAGGGAGGTGGAAGCG
TACGCGGGTGGTGGAGACACCCTGCCACTGGGGACCTGCAGGCAGGGCAA
GCGAACCTGCTGTGGGCGCCAGGGCCTGCATCCGGGCACCTCTGGGGTGG
AAGGGCCTGTGCCTGCGAGGGAGATGGAAGCGTACTCGTACGCGCGTGGT
GGAGACACGCTGCCACTGGGCAACACCTGCGGGCAGGGCGAGCGGACCTG
CTGTGGGCAGCGGGGCCCGCACCCAGGCGCCCCAATGGAAGGGCCTGTGC
CTGCGAGGGAGATGGAAGCGTACGAGTACGCGCGTGGTGGAGGCGCCCTG
CCACTGGGTGCCTGCGGGCAGGGCGAGGGCACCTGCTGTGGGCCCCAGGG
CCCGCACCCCCGGGGCGCCCGGGTGGAAGGGCCTGTGCCTGTGGTGGACC
GGATGGAGTGGGGCGGTCGTGTTGGGATCGTCTGCGATGTTGCCCCTGGG
GACAGTGATCCCGGCGAGATGTGCTACGAAGCTTGGGTTTGAGTCAGAGA
GGGGTCTGCGCAATGGCTCTAAGGGCCGTTCTTAACCCTTTTACCCCTGG
GGTCCGTATGCTCATAGGGTTTTAGTGTGTGCATCCAATGTACCAGGGGT
GAAAGGGTTAATGACAATGGAGGCCAGTACCGCAAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:393101..394536+

>mRNA_S-ischiensis_contig9.20427.1 ID=mRNA_S-ischiensis_contig9.20427.1|Name=mRNA_S-ischiensis_contig9.20427.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1482bp|location=Sequence derived from alignment at S-ischiensis_contig9:393101..394536+ (Schizocladia ischiensis KU_0333)
ATGGGGCTGGGCGCGCTTGTAGATCCCGTGCGACTTGCCGCCTGCAGGCA
GGGCCATATTGATTTTTCTTGCGGTTACAACTTTGTACTCCCGGGAGGAC
GCGCCCGGTGGCCCCCTCGTGCAAGTGCCTGCGGACAAGGTAGAGATAGA
ACAGTTGTGCACGTGTGGAGATGCCCTGCGGCTGGGCGCTTGCAGGCAGG
GCGAGCGAACCTGCTGTGGGCCTCAGGGCCCGCACCCGGGCGCCCAGGTG
GAAGGGCCTGTGCCTGCGAGGGAGGTGGAAGCGTACGCGGGTGGTGGAGA
CACCCTGCCACTGGGGACCTGCAGGCAGGGCAAGCGAACCTGCTGTGGGC
GCCAGGGCCTGCATCCGGGCACCTCTGGGGTGGAAGGGCCTGTGCCTGCG
AGGGAGATGGAAGCGTACTCGTACGCGCGTGGTGGAGACACGCTGCCACT
GGGCAACACCTGCGGGCAGGGCGAGCGGACCTGCTGTGGGCAGCGGGGCC
CGCACCCAGGCGCCCCAATGGAAGGGCCTGTGCCTGCGAGGGAGATGGAA
GCGTACGAGTACGCGCGTGGTGGAGGCGCCCTGCCACTGGGTGCCTGCGG
GCAGGGCGAGGGCACCTGCTGTGGGCCCCAGGGCCCGCACCCCCGGGGCG
CCCGGGTGGAAGGGCCTGTGCCTGTGGTGGACCGGATGGAGTGGGGCGGT
CGTGTTGGGATCGTCTGCGATGTTGCCCCTGGGGACAGTGAATGGGGCTG
GGCGCGCTTGTAGATCCCGTGCGACTTGCCGCCTGCAGGCAGGGCCATAT
TGATTTTTCTTGCGGTTACAACTTTGTACTCCCGGGAGGACGCGCCCGGT
GGCCCCCTCGTGCAAGTGCCTGCGGACAAGGTAGAGATAGAACAGTTGTG
CACGTGTGGAGATGCCCTGCGGCTGGGCGCTTGCAGGCAGGGCGAGCGAA
CCTGCTGTGGGCCTCAGGGCCCGCACCCGGGCGCCCAGGTGGAAGGGCCT
GTGCCTGCGAGGGAGGTGGAAGCGTACGCGGGTGGTGGAGACACCCTGCC
ACTGGGGACCTGCAGGCAGGGCAAGCGAACCTGCTGTGGGCGCCAGGGCC
TGCATCCGGGCACCTCTGGGGTGGAAGGGCCTGTGCCTGCGAGGGAGATG
GAAGCGTACTCGTACGCGCGTGGTGGAGACACGCTGCCACTGGGCAACAC
CTGCGGGCAGGGCGAGCGGACCTGCTGTGGGCAGCGGGGCCCGCACCCAG
GCGCCCCAATGGAAGGGCCTGTGCCTGCGAGGGAGATGGAAGCGTACGAG
TACGCGCGTGGTGGAGGCGCCCTGCCACTGGGTGCCTGCGGGCAGGGCGA
GGGCACCTGCTGTGGGCCCCAGGGCCCGCACCCCCGGGGCGCCCGGGTGG
AAGGGCCTGTGCCTGTGGTGGACCGGATGGAGTGGGGCGGTCGTGTTGGG
ATCGTCTGCGATGTTGCCCCTGGGGACAGTGA
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