mRNA_S-ischiensis_contig9.20426.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20426.1
Unique NamemRNA_S-ischiensis_contig9.20426.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20426.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:389304..391138 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size905
Cds size903
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20426.1prot_S-ischiensis_contig9.20426.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 389305..391138 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817363.49297-CDS-S-ischiensis_contig9:389304..3894421622817363.49297-CDS-S-ischiensis_contig9:389304..389442Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 389305..389442 -
1695741058.3764007-CDS-S-ischiensis_contig9:389304..3894421695741058.3764007-CDS-S-ischiensis_contig9:389304..389442Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 389305..389442 -
1622817363.504777-CDS-S-ischiensis_contig9:389685..3899051622817363.504777-CDS-S-ischiensis_contig9:389685..389905Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 389686..389905 -
1695741058.3920178-CDS-S-ischiensis_contig9:389685..3899051695741058.3920178-CDS-S-ischiensis_contig9:389685..389905Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 389686..389905 -
1622817363.5167215-CDS-S-ischiensis_contig9:390465..3908071622817363.5167215-CDS-S-ischiensis_contig9:390465..390807Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 390466..390807 -
1695741058.4097114-CDS-S-ischiensis_contig9:390465..3908071695741058.4097114-CDS-S-ischiensis_contig9:390465..390807Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 390466..390807 -
1622817363.5282855-CDS-S-ischiensis_contig9:390935..3911381622817363.5282855-CDS-S-ischiensis_contig9:390935..391138Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 390936..391138 -
1695741058.4223232-CDS-S-ischiensis_contig9:390935..3911381695741058.4223232-CDS-S-ischiensis_contig9:390935..391138Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 390936..391138 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20426.1

>prot_S-ischiensis_contig9.20426.1 ID=prot_S-ischiensis_contig9.20426.1|Name=mRNA_S-ischiensis_contig9.20426.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=301bp
CRAQSFPPWEGGRWCLLLNLACPEEEEDGAMDVSFGSDNVLVAQLNRALL
MGASVGQRFLPAAAQHFRTIASGNLHPLQVAGYFVLAMEVLMAAWYWSRL
FPREEPDTISELSSLPPSTAHHADHEYASHVSYCTSMDSRLSVDSRESSR
VSLGSFSYAGGALVPGRHSLDNTVSSHAHPRRLSFRTDHSADGSKSSKQG
SSHHPGSRATSVSRQSRPESRATSVSRQSRRSRRSSGGGGKSNGDGTQAT
DDPRQGRRSTGSVPKTAAAGAAASSRDRRSLPGKVRHSTGNVSMVLSGPS
E
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mRNA from alignment at S-ischiensis_contig9:389304..391138-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20426.1 ID=mRNA_S-ischiensis_contig9.20426.1|Name=mRNA_S-ischiensis_contig9.20426.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1835bp|location=Sequence derived from alignment at S-ischiensis_contig9:389304..391138- (Schizocladia ischiensis KU_0333)
TGCCGCGCGCAGAGCTTCCCACCCTGGGAAGGTGGGCGGTGGTGCCTCCT
TCTTAACTTGGCATGCCCCGAGGAGGAGGAGGACGGCGCCATGGATGTCT
CTTTCGGGTCGGACAATGTACTAGTCGCACAGCTAAACCGAGCTCTCTTG
ATGGGCGCCTCCGTCGGGCAGAGGTTCTTACCGGCCGCTGCCCAACACTT
CAGGTGAGCCCAGGCCACAGCCTCTTGAAAACCCTCGCTCGCTTCCCTTG
GCCTGGTTCTGGCCGACCTGTTCAGACTCAGACCAGCAGCTCACATCGCC
GCCCGCCCTCCTTGCGCGGACCGCACTGCAGGACCATCGCGAGCGGCAAT
CTGCACCCGCTCCAGGTCGCGGGCTACTTCGTCCTGGCGATGGAGGTGCT
CATGGCGGCGTGGTACTGGTCGCGCCTCTTCCCCCGGGAAGAGCCTGACA
CGATCAGTGAACTCTCGAGCCTCCCCCCCTCTACTGCACATCATGCCGAT
CACGAATACGCCTCCCACGTGAGCTATTGCACGAGCATGGACTCTCGGCT
GAGCGTCGACAGCCGGGAGAGCTCTCGTGTCAGTCTCGGCAGTTTCTCTT
ACGCCGGCGGGGCTTTGGTCCCGGGCCGCCACAGCTTGGACAACACGGTT
TCTTCCCACGCCCACCCCAGAAGGTGAAGCCCTCTCTGCGACTGCCGGGG
CCTTTGTCACTCGCCTTGATTTGCATGTTGCATATATACTGTATATATGT
ACTCACGTTGTGCTTGCCGTAGTCGCGAGACAATTTGACCACGCGCCTCG
GTCGAGACGGAGCAGGACCCCCCCCTCCCCTTGCAGAGCCAGGGTGGGAG
GGGGTACGGGGGCAACACAGAGAGGCTGAAGGCTGCACCAGCCTCCCCGA
CGAACGACGAACGATGGCTCTGTCCCATGGGGTGGCCCACTAGTGAGACC
ATTGACCCCTCGCCTCGACCGAGACGGAGCAGCCCCCCATTCCTCCCCTG
GCAGAGCCGGTACTACTACTGTACTCGAGTAGTACATATGTACTTGGAGA
GTTTTAGCACTGCAGTCCGACTATAGTACTACTATGTTGTTATGGCGAGC
ATTCGTGAGTATGCCCACCGCACACCCGCACACGCATACACACACACGAA
TGCACCTGCACGCACGCGCACGCACACACACACGCACGCGCCCACGCACG
CACACGCGCACGCACACACGCACGCGCCCACAGGCTGAGCTTCCGCACGG
ACCACAGCGCGGACGGGAGCAAGAGCAGCAAGCAGGGGAGCAGCCACCAC
CCCGGGAGCAGGGCGACAAGCGTCAGTCGCCAAAGCCGCCCTGAGAGCAG
GGCCACAAGCGTCAGTCGCCAAAGCCGCCGCAGCCGCCGAAGCAGCGGCG
GCGGTGGCAAGAGCAACGGGGATGGGACCCAGGCTACAGACGACCCCCGT
CAGGTAACCAGGGCACAAAATTGCAATCGCTGTTTTTATGCCCGGGCTGC
CCTATGAAGGACAACATCGGATGACCGTGACATTTCGACACGTGAAAGCG
CTCGATGAGTACGTTCATTTGCGCTATAGTTTTCGTACTCGAGTATCACA
ACATCACATGGACCGAGCAACAACAGGTCAATCGATATCCGATAAAACTA
TTTGGGCAAACAAAAAATCGCTCTTTTGTGCCATGGTTACCGTCAGGGGC
GACGTAGCACCGGAAGCGTGCCTAAGACGGCTGCGGCGGGGGCAGCGGCA
TCATCACGTGACAGAAGAAGCCTACCCGGCAAAGTCCGTCATTCCACGGG
GAATGTGTCGATGGTCCTGAGCGGGCCGAGCGAGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:389304..391138-

>mRNA_S-ischiensis_contig9.20426.1 ID=mRNA_S-ischiensis_contig9.20426.1|Name=mRNA_S-ischiensis_contig9.20426.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1806bp|location=Sequence derived from alignment at S-ischiensis_contig9:389304..391138- (Schizocladia ischiensis KU_0333)
TGCCGCGCGCAGAGCTTCCCACCCTGGGAAGGTGGGCGGTGGTGCCTCCT
TCTTAACTTGGCATGCCCCGAGGAGGAGGAGGACGGCGCCATGGATGTCT
CTTTCGGGTCGGACAATGTACTAGTCGCACAGCTAAACCGAGCTCTCTTG
ATGGGCGCCTCCGTCGGGCAGAGGTTCTTACCGGCCGCTGCCCAACACTT
CAGTGCCGCGCGCAGAGCTTCCCACCCTGGGAAGGTGGGCGGTGGTGCCT
CCTTCTTAACTTGGCATGCCCCGAGGAGGAGGAGGACGGCGCCATGGATG
TCTCTTTCGGGTCGGACAATGTACTAGTCGCACAGCTAAACCGAGCTCTC
TTGATGGGCGCCTCCGTCGGGCAGAGGTTCTTACCGGCCGCTGCCCAACA
CTTCAGGACCATCGCGAGCGGCAATCTGCACCCGCTCCAGGTCGCGGGCT
ACTTCGTCCTGGCGATGGAGGTGCTCATGGCGGCGTGGTACTGGTCGCGC
CTCTTCCCCCGGGAAGAGCCTGACACGATCAGTGAACTCTCGAGCCTCCC
CCCCTCTACTGCACATCATGCCGATCACGAATACGCCTCCCACGTGAGCT
ATTGCACGAGCATGGACTCTCGGCTGAGCGTCGACAGCCGGGAGAGCTCT
CGTGTCAGTCTCGGCAGTTTCTCTTACGCCGGCGGGGCTTTGGTCCCGGG
CCGCCACAGCTTGGACAACACGGTTTCTTCCCACGCCCACCCCAGAAGGA
CCATCGCGAGCGGCAATCTGCACCCGCTCCAGGTCGCGGGCTACTTCGTC
CTGGCGATGGAGGTGCTCATGGCGGCGTGGTACTGGTCGCGCCTCTTCCC
CCGGGAAGAGCCTGACACGATCAGTGAACTCTCGAGCCTCCCCCCCTCTA
CTGCACATCATGCCGATCACGAATACGCCTCCCACGTGAGCTATTGCACG
AGCATGGACTCTCGGCTGAGCGTCGACAGCCGGGAGAGCTCTCGTGTCAG
TCTCGGCAGTTTCTCTTACGCCGGCGGGGCTTTGGTCCCGGGCCGCCACA
GCTTGGACAACACGGTTTCTTCCCACGCCCACCCCAGAAGGCTGAGCTTC
CGCACGGACCACAGCGCGGACGGGAGCAAGAGCAGCAAGCAGGGGAGCAG
CCACCACCCCGGGAGCAGGGCGACAAGCGTCAGTCGCCAAAGCCGCCCTG
AGAGCAGGGCCACAAGCGTCAGTCGCCAAAGCCGCCGCAGCCGCCGAAGC
AGCGGCGGCGGTGGCAAGAGCAACGGGGATGGGACCCAGGCTACAGACGA
CCCCCGTCAGGCTGAGCTTCCGCACGGACCACAGCGCGGACGGGAGCAAG
AGCAGCAAGCAGGGGAGCAGCCACCACCCCGGGAGCAGGGCGACAAGCGT
CAGTCGCCAAAGCCGCCCTGAGAGCAGGGCCACAAGCGTCAGTCGCCAAA
GCCGCCGCAGCCGCCGAAGCAGCGGCGGCGGTGGCAAGAGCAACGGGGAT
GGGACCCAGGCTACAGACGACCCCCGTCAGGGGCGACGTAGCACCGGAAG
CGTGCCTAAGACGGCTGCGGCGGGGGCAGCGGCATCATCACGTGACAGAA
GAAGCCTACCCGGCAAAGTCCGTCATTCCACGGGGAATGTGTCGATGGTC
CTGAGCGGGCCGAGCGAGGGGCGACGTAGCACCGGAAGCGTGCCTAAGAC
GGCTGCGGCGGGGGCAGCGGCATCATCACGTGACAGAAGAAGCCTACCCG
GCAAAGTCCGTCATTCCACGGGGAATGTGTCGATGGTCCTGAGCGGGCCG
AGCGAG
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