mRNA_S-ischiensis_contig9.20422.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20422.1
Unique NamemRNA_S-ischiensis_contig9.20422.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20422.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:350527..352038 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size981
Cds size495
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20422.1prot_S-ischiensis_contig9.20422.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 350816..351841 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817363.4110637-UTR-S-ischiensis_contig9:350526..3508151622817363.4110637-UTR-S-ischiensis_contig9:350526..350815Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 350527..350815 +
1695741058.318735-UTR-S-ischiensis_contig9:350526..3508151695741058.318735-UTR-S-ischiensis_contig9:350526..350815Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 350527..350815 +
1622817363.4609387-UTR-S-ischiensis_contig9:351841..3520381622817363.4609387-UTR-S-ischiensis_contig9:351841..352038Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 351842..352038 +
1695741058.3582087-UTR-S-ischiensis_contig9:351841..3520381695741058.3582087-UTR-S-ischiensis_contig9:351841..352038Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 351842..352038 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817363.4330955-CDS-S-ischiensis_contig9:350815..3509751622817363.4330955-CDS-S-ischiensis_contig9:350815..350975Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 350816..350975 +
1695741058.3330975-CDS-S-ischiensis_contig9:350815..3509751695741058.3330975-CDS-S-ischiensis_contig9:350815..350975Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 350816..350975 +
1622817363.4480362-CDS-S-ischiensis_contig9:351506..3518411622817363.4480362-CDS-S-ischiensis_contig9:351506..351841Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 351507..351841 +
1695741058.343599-CDS-S-ischiensis_contig9:351506..3518411695741058.343599-CDS-S-ischiensis_contig9:351506..351841Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 351507..351841 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20422.1

>prot_S-ischiensis_contig9.20422.1 ID=prot_S-ischiensis_contig9.20422.1|Name=mRNA_S-ischiensis_contig9.20422.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=165bp
MADAAAATRAGEDARSEPNLELLVQEVESKLRTSDTYDQIREAARRFIAG
GPGGDTDEAGVLEKVVKAVEGKLGLFPTTMASAPAAAGLTGVRQQQQERQ
RCIYLKVRVVEAVLRGSGCLRKVARLTWQSNQSPTISRPCAGPLPRSMVG
SRPDFGAVEPAICL*
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mRNA from alignment at S-ischiensis_contig9:350527..352038+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20422.1 ID=mRNA_S-ischiensis_contig9.20422.1|Name=mRNA_S-ischiensis_contig9.20422.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1512bp|location=Sequence derived from alignment at S-ischiensis_contig9:350527..352038+ (Schizocladia ischiensis KU_0333)
CTGAGCTTCAGGTTGGGGTCTTTTGGTGGACTGGGACACCCCCCAGCGGA
TGTATGCGGTCGTTGACCTTCCACGACTGGTCTGATTGCTTTTGCCCCCA
TCCTGAGCCGCTTACTGCATTCAGCTCTTGAGTGAGAGGAGCTGGGGTTT
TGTGCAACCGTGTCCGTTGACCTTTTCCAGGCGTCCACGTGCGACACTTC
CGACGATACCGCTGCGCCGGGCGGTGACGAATCCACCTCCAAGATCGTGC
AAGGAAGCTGTGTAGACGTTGTGGCCTCACAGCGTTGTCATGGCCGATGC
TGCAGCCGCGACCAGAGCAGGGGAAGATGCGCGTTCGGAGCCGAACCTGG
AGCTCCTCGTCCAGGAGGTGGAGAGCAAACTCCGGACGTCCGACACGTAC
GACCAGATAAGAGAGGCCGCCCGCAGGTTCATTGCCGGCGGTCCTGGCGG
TGAGAGACGGTCCGCGGTCACGGTCCCGTACTTAGATGAACACTGCACGG
TACAGCACCTCGCCGTGGCCCACACCCACTCCCAGCTTTGACCAGGGTTG
GCACTAAAAAGTTTTACTAGGGCCTAGTTAGCCTTCATTTTAGGTCTAAT
TACCCCTAATTACCTCGCATTAAGGGCCTAAAAGGGCACCACTTAGGTTT
AAGTGTCAACCCTGGCTGTGACTACATACCTGCAGGCAACAAATACCTCA
CCCTGCCCCGAGCACCTCATCCTGGACGTTGGTGTTGCTACTGTCACATG
CCTGGCCTGTGAAACACCCCTGACCATGCCGTGGTACCTGGGGCGCCCAA
CTCCCTATCTTCAACGGCCACGCAAATGAGGGGGGGAGCAGAAGCCGCCC
AACAATTTATCACATTTACAAGGGCACTGTAGTACTTAGGAAGTAGGTTT
TCGTGGTCCTGGCAATGACGGCACATAGAAAAATTAACCGGCCAAAACCC
GGCCGGGTGTGTGCTAATGAAACCCTGCAGGGGACACGGACGAGGCGGGA
GTCCTGGAGAAAGTGGTAAAAGCCGTTGAGGGCAAGCTCGGGCTATTCCC
TACCACCATGGCGTCTGCCCCGGCTGCCGCGGGCCTGACTGGGGTTCGGC
AGCAGCAACAGGAGCGGCAGCGGTGCATATACCTCAAGGTGCGTGTGGTG
GAAGCAGTACTGCGGGGCTCAGGATGCTTGAGGAAAGTTGCCCGGCTCAC
TTGGCAATCCAACCAATCACCCACGATTTCGCGGCCTTGTGCAGGCCCGT
TGCCGAGGTCTATGGTGGGCAGCCGGCCTGACTTTGGTGCAGTAGAGCCG
GCGATTTGTTTGTGAGGGGATTTGGTCCCTGCAGTGCAGTGCTCACATGC
ACCAGAGCCGGTCGTGGCCCAGAGAAGATTGACCGCATGGCCTCTTCCGC
ATTGGAAGCAACACACACACGCACACATCAGCCATTTGTGCTTCACACAG
GCACGGGCCACGCGCTCCCTCCCGAGGGGGGCAATTGAAGGACTTGGAAA
AACTGGTAGTTC
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:350527..352038+

>mRNA_S-ischiensis_contig9.20422.1 ID=mRNA_S-ischiensis_contig9.20422.1|Name=mRNA_S-ischiensis_contig9.20422.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=990bp|location=Sequence derived from alignment at S-ischiensis_contig9:350527..352038+ (Schizocladia ischiensis KU_0333)
ATGGCCGATGCTGCAGCCGCGACCAGAGCAGGGGAAGATGCGCGTTCGGA
GCCGAACCTGGAGCTCCTCGTCCAGGAGGTGGAGAGCAAACTCCGGACGT
CCGACACGTACGACCAGATAAGAGAGGCCGCCCGCAGGTTCATTGCCGGC
GGTCCTGGCGATGGCCGATGCTGCAGCCGCGACCAGAGCAGGGGAAGATG
CGCGTTCGGAGCCGAACCTGGAGCTCCTCGTCCAGGAGGTGGAGAGCAAA
CTCCGGACGTCCGACACGTACGACCAGATAAGAGAGGCCGCCCGCAGGTT
CATTGCCGGCGGTCCTGGCGGGGACACGGACGAGGCGGGAGTCCTGGAGA
AAGTGGTAAAAGCCGTTGAGGGCAAGCTCGGGCTATTCCCTACCACCATG
GCGTCTGCCCCGGCTGCCGCGGGCCTGACTGGGGTTCGGCAGCAGCAACA
GGAGCGGCAGCGGTGCATATACCTCAAGGTGCGTGTGGTGGAAGCAGTAC
TGCGGGGCTCAGGATGCTTGAGGAAAGTTGCCCGGCTCACTTGGCAATCC
AACCAATCACCCACGATTTCGCGGCCTTGTGCAGGCCCGTTGCCGAGGTC
TATGGTGGGCAGCCGGCCTGACTTTGGTGCAGTAGAGCCGGCGATTTGTT
TGTGAGGGACACGGACGAGGCGGGAGTCCTGGAGAAAGTGGTAAAAGCCG
TTGAGGGCAAGCTCGGGCTATTCCCTACCACCATGGCGTCTGCCCCGGCT
GCCGCGGGCCTGACTGGGGTTCGGCAGCAGCAACAGGAGCGGCAGCGGTG
CATATACCTCAAGGTGCGTGTGGTGGAAGCAGTACTGCGGGGCTCAGGAT
GCTTGAGGAAAGTTGCCCGGCTCACTTGGCAATCCAACCAATCACCCACG
ATTTCGCGGCCTTGTGCAGGCCCGTTGCCGAGGTCTATGGTGGGCAGCCG
GCCTGACTTTGGTGCAGTAGAGCCGGCGATTTGTTTGTGA
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