mRNA_S-ischiensis_contig9.20399.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20399.1
Unique NamemRNA_S-ischiensis_contig9.20399.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig9.20399.1 vs. uniprot
Match: D8LN71_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN71_ECTSI)

HSP 1 Score: 142 bits (359), Expect = 3.610e-36
Identity = 71/102 (69.61%), Postives = 83/102 (81.37%), Query Frame = 1 
Query:   25 FELTREELEAVPRLKEGDFLRAEVEELVLNCVNADPNYGSMWFHCRHRPSDTAKSVLMMAKLMMADELTKLQPVYLAAMVRCLLLEDDMDAYVASTTPKEED 330
            FEL  +E+ A  RL  GDFLRAEVE LVL CVNADPNYGSMWFHCRHRPSDTAKS+LMM+K+MMA+ELT LQ VYL A+ R +LL+ + DAY+AS  P EE+
Sbjct:  900 FELGEDEVAAAGRLSPGDFLRAEVEGLVLRCVNADPNYGSMWFHCRHRPSDTAKSILMMSKVMMAEELTNLQDVYLHAVTRHVLLQREADAYLASRKPLEEE 1001
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BLAST of mRNA_S-ischiensis_contig9.20399.1 vs. uniprot
Match: A0A6H5KEQ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEQ7_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 1.730e-35
Identity = 72/109 (66.06%), Postives = 84/109 (77.06%), Query Frame = 1 
Query:    4 GGSSSEVFELTREELEAVPRLKEGDFLRAEVEELVLNCVNADPNYGSMWFHCRHRPSDTAKSVLMMAKLMMADELTKLQPVYLAAMVRCLLLEDDMDAYVASTTPKEED 330
            GG     FEL  +E+ A  RL  GDFLRAEVE LVL CVNADPNYGSMWFHCRHRPSDTAKS+LMM+K+MMA+ELT LQ VYL A+ R +LL+ + DAY+AS    EE+
Sbjct: 1166 GGVPGGWFELGEDEVAAAGRLSPGDFLRAEVEGLVLRCVNADPNYGSMWFHCRHRPSDTAKSILMMSKVMMAEELTNLQDVYLHAVTRHVLLQREADAYLASWKHPEEE 1274
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BLAST of mRNA_S-ischiensis_contig9.20399.1 vs. uniprot
Match: A0A7S3XSA8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XSA8_HETAK)

HSP 1 Score: 91.7 bits (226), Expect = 2.820e-20
Identity = 43/72 (59.72%), Postives = 54/72 (75.00%), Query Frame = 1 
Query:   76 DFLRAEVEELVLNCVNADPNYGSMWFHCRHRPSDTAKSVLMMAKLMMADELTKLQPVYLAAMVRCLLLEDDM 291
            DF+R + ++L L CVNADPNYGSMWFHCR +PSDTA+SVL  AK +MA EL  LQ VY+ A+ R  L+E  +
Sbjct:   21 DFMRVDTKQLELRCVNADPNYGSMWFHCRQKPSDTARSVLWRAKSLMAVELHNLQHVYIKALARYKLVEQQV 92
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BLAST of mRNA_S-ischiensis_contig9.20399.1 vs. uniprot
Match: A0A2R5GDZ7_9STRA (Pre-mRNA-splicing factor CLF1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GDZ7_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 6.920e-12
Identity = 33/75 (44.00%), Postives = 48/75 (64.00%), Query Frame = 1 
Query:   73 GDFLRAEVEELVLNCVNADPNYGSMWFHCRHRPSDTAKSVLMMAKLMMADELTKLQPVYLAAMVRCLLLEDDMDA 297
             + +  +  ++ L CVNADPNYG++WFHC+  P DTA+ VL  AK +M +ELTK + VY  A+V  +  + D  A
Sbjct: 1274 ANMMACDTSDIELRCVNADPNYGALWFHCKRGPFDTARQVLRTAKSLMIEELTKFRAVYREAIVESIHRKRDTAA 1348
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BLAST of mRNA_S-ischiensis_contig9.20399.1 vs. uniprot
Match: W7TFT0_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TFT0_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 6.940e-12
Identity = 32/63 (50.79%), Postives = 46/63 (73.02%), Query Frame = 1 
Query:   79 FLRAEVEELVLNCVNADPNYGSMWFHCRHRPSDTAKSVLMMAKLMMADELTKLQPVYLAAMVR 267
            F+  + EEL L C NADPNYG  WFHCR  PSD+ + ++  AK ++A++L+ L P+YLAA++R
Sbjct: 1193 FMTTDTEELELRCSNADPNYGLFWFHCRDLPSDSPRLMMRRAKALLAEDLSVLFPLYLAAILR 1255
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BLAST of mRNA_S-ischiensis_contig9.20399.1 vs. uniprot
Match: A0A4D9D155_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D155_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 3.270e-11
Identity = 30/63 (47.62%), Postives = 46/63 (73.02%), Query Frame = 1 
Query:   79 FLRAEVEELVLNCVNADPNYGSMWFHCRHRPSDTAKSVLMMAKLMMADELTKLQPVYLAAMVR 267
            F+  + +EL + C NADPNYG  WFHCR  PSD+ + ++  AK ++A++L+ L P+YLAA++R
Sbjct: 1543 FMTTDTQELEMRCSNADPNYGLFWFHCRDLPSDSPRLMMRRAKALLAEDLSVLFPLYLAAILR 1605
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BLAST of mRNA_S-ischiensis_contig9.20399.1 vs. uniprot
Match: A0A7S2Y4L6_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y4L6_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.870e-10
Identity = 40/92 (43.48%), Postives = 55/92 (59.78%), Query Frame = 1 
Query:    1 GGGSSSEVFELTREELEAVPRLK-EGDFLRAEVE--ELVLNCVNADPNYGSMWFHCRHRPSDTAKSVLMMAKLMMADELTKLQPVYLAAMVR 267
            G   + EV E    E+ +  R K + D LR+ ++  +L L C NADPNYGS+WFHCR  P  T + V+  A   +ADE+ K   +YLAAM+R
Sbjct:  540 GSDKTKEVPETKFREIVSTLRKKLQADNLRSSIDLTDLRLACTNADPNYGSLWFHCRRLPMYTPRRVIEHAAEDIADEIFKYANIYLAAMIR 631
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BLAST of mRNA_S-ischiensis_contig9.20399.1 vs. uniprot
Match: A0A7S1KQ47_9EUKA (Hypothetical protein n=1 Tax=Percolomonas cosmopolitus TaxID=63605 RepID=A0A7S1KQ47_9EUKA)

HSP 1 Score: 64.3 bits (155), Expect = 7.830e-9
Identity = 41/91 (45.05%), Postives = 56/91 (61.54%), Query Frame = 1 
Query:   31 LTREELEAVPRLKEGDFLRAEVEELVLNCVNADPNYGSMWFHCRHRPSDTAKSVLMMAKLMMADELTKLQPVYLAAMVR--CLLLEDDMDA 297
            L  E L   PRL+E D L   +E+L   CVNADPNYG +WF C+  P+D+ +SVL  AK ++  ELTK Q  Y  A++R  C  +  ++DA
Sbjct:  994 LRLELLSKGPRLEEQDKLY--LEQL---CVNADPNYGPLWFFCKTCPTDSTRSVLRRAKNLLRQELTKYQVPYQRAILRFACKSVSVNIDA 1079
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BLAST of mRNA_S-ischiensis_contig9.20399.1 vs. uniprot
Match: A0A7R9ZRF3_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZRF3_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 8.580e-9
Identity = 30/65 (46.15%), Postives = 39/65 (60.00%), Query Frame = 1 
Query:   91 EVEELVLNCVNADPNYGSMWFHCRHRPSDTAKSVLMMAKLMMADELTKLQPVYLAAMVRCLLLED 285
            +   L L C NADPNYGS+WFHCR  P+DTA+ VL  A  +M +E+      Y+ A VR   L +
Sbjct:   86 DTSNLELRCANADPNYGSLWFHCRDGPTDTARRVLAKALEIMMNEMRSTAIYYVVAFVRRYALRE 150
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BLAST of mRNA_S-ischiensis_contig9.20399.1 vs. uniprot
Match: F0YHD2_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YHD2_AURAN)

HSP 1 Score: 62.4 bits (150), Expect = 3.410e-8
Identity = 28/54 (51.85%), Postives = 36/54 (66.67%), Query Frame = 1 
Query:   97 EELVLNCVNADPNYGSMWFHCRHRPSDTAKSVLMMAKLMMADELTKLQPVYLAA 258
            + L L C NADPNYG+MWF CRH P+DTA+ +L  A+  +  E+   Q VY AA
Sbjct:  612 DRLDLRCANADPNYGAMWFECRHGPADTARIILARARSNLVQEICVHQHVYAAA 665
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20399.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
D8LN71_ECTSI3.610e-3669.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KEQ7_9PHAE1.730e-3566.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3XSA8_HETAK2.820e-2059.72Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A2R5GDZ7_9STRA6.920e-1244.00Pre-mRNA-splicing factor CLF1 n=1 Tax=Hondaea ferm... [more]
W7TFT0_9STRA6.940e-1250.79Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A4D9D155_9STRA3.270e-1147.62Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S2Y4L6_9STRA1.870e-1043.48Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S1KQ47_9EUKA7.830e-945.05Hypothetical protein n=1 Tax=Percolomonas cosmopol... [more]
A0A7R9ZRF3_9STRA8.580e-946.15Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
F0YHD2_AURAN3.410e-851.85Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:202329..203861 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score142.9
Seed ortholog evalue1.4e-31
Seed eggNOG ortholog2880.D8LN71
EggNOG OGs28JG8@1,2QRVD@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-05_003750.1
Exons3
Model size523
Cds size522
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20399.1prot_S-ischiensis_contig9.20399.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 202329..203861 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817375.4911878-CDS-S-ischiensis_contig9:202328..2025161622817375.4911878-CDS-S-ischiensis_contig9:202328..202516Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 202329..202516 -
1695741065.7388377-CDS-S-ischiensis_contig9:202328..2025161695741065.7388377-CDS-S-ischiensis_contig9:202328..202516Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 202329..202516 -
1622817375.5028687-CDS-S-ischiensis_contig9:202934..2030831622817375.5028687-CDS-S-ischiensis_contig9:202934..203083Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 202935..203083 -
1695741065.7519662-CDS-S-ischiensis_contig9:202934..2030831695741065.7519662-CDS-S-ischiensis_contig9:202934..203083Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 202935..203083 -
1622817375.5135257-CDS-S-ischiensis_contig9:203676..2038611622817375.5135257-CDS-S-ischiensis_contig9:203676..203861Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 203677..203861 -
1695741065.7619572-CDS-S-ischiensis_contig9:203676..2038611695741065.7619572-CDS-S-ischiensis_contig9:203676..203861Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 203677..203861 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20399.1

>prot_S-ischiensis_contig9.20399.1 ID=prot_S-ischiensis_contig9.20399.1|Name=mRNA_S-ischiensis_contig9.20399.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=174bp
GGGSSSEVFELTREELEAVPRLKEGDFLRAEVEELVLNCVNADPNYGSMW
FHCRHRPSDTAKSVLMMAKLMMADELTKLQPVYLAAMVRCLLLEDDMDAY
VASTTPKEEDAAAAAAALATPAAPATPGPAGGVGTPSALRAQARAHLEER
ARERARLRDYHHHHTDGEEEGGEG
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mRNA from alignment at S-ischiensis_contig9:202329..203861-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20399.1 ID=mRNA_S-ischiensis_contig9.20399.1|Name=mRNA_S-ischiensis_contig9.20399.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1533bp|location=Sequence derived from alignment at S-ischiensis_contig9:202329..203861- (Schizocladia ischiensis KU_0333)
GGGGGTGGGTCGTCTTCTGAGGTGTTTGAGCTGACACGGGAGGAGTTGGA
GGCGGTGCCCCGGTTGAAGGAGGGCGATTTCCTCCGTGCGGAGGTGGAGG
AGCTCGTGCTGAACTGCGTCAACGCTGACCCTAACTACGGGTCCATGTGG
TTCCACTGCCGCCACCGCCCCTCGGACACGGCCAAGTGAGTAACAGAGTT
TGTTTTCCTTGGATGTTGTCCTTTGTCCGCCCGACGGGTTGGTTGGTTCC
ATCGACCGACCGTGCACGCCTGTCCAATGTTTCGACCGCCCATTGAGGTC
GTCGGTGTGACCCAGCCGCATCCATCTGTGGTGTTTTGGTTGTGGTGCTG
TTTGCGTAGCTTCTATGTGTCCCCACGGCGTGACAGAACCATGTCTCTGA
GCTTCCGTACGGACTTGAGAAATACCGTAGTGCAACATGTCAAATGATGC
GATGACACACGCCAACTGATGCTACTGTTGTGTAATGTCAGGTCGGTGCT
GATTGCCAAACTGATGATGGCATAGACACACGCCGACCCATTTTAACGTG
CTGTAATGTTGTGTACCCAACAGGTCGGTGCTGATGACGGCAGACTTGTG
AAATACAGTACTGCAGTGCAAAATGTCACAGTATGTGATGGCACACGCCA
ACTGATGCTATTGTTGTTACATGTCAGGTCGGTGCTGATGATGGCAGACG
CCAGGCTCTCTTCCCATGCTTGATGCTACAAGTATTGTAATGTGTTGTTA
CTTATGTTGTGTAATGTGTAATTTACAGGTCTGTGCTGATGATGGCAAAG
CTGATGATGGCGGACGAGCTCACCAAGCTGCAGCCCGTGTACCTGGCGGC
CATGGTGCGCTGCCTCCTGCTGGAGGATGACATGGACGCCTACGTGGCCT
CCACAACTCCCAAGGAGGAGGATGCCGGTGAGGAAGAGAGAGGGAGAGAG
ACAGAGACAAAGGTATTGCCCCATTTGCTTGTGCGTGCTTGCACTTGTGT
GCACGGCAGTACGACGACTACTACTGTAGTACTGGTGATTCATATAAATT
GCAACGGCGTACAATCGCACATGTATGAGATTGAGTGTTTTTTATTGTTT
TGATGGCATGCGATTGTTCTCGTATTGTTGGTTATCCCATCGAAGGATTG
AGTGTTCCTTGTACGAGTACTGTACGGTGAGGTACTTGCTGTAGGTACCC
CAACGATGCTGCACTTCAACTGAAGTGTAGGTGCACTGTATACGGTGCAC
GCAATCCGGAAACTGCGCACTCCCACACATAATTGCACAGTGCTTACCAT
GTGCACACCTTGCCCCCCTTTCACGGTGCCGTCCCCGCAACGCAGCCGCA
GCCGCCGCCGCCTTGGCCACCCCAGCCGCCCCGGCCACACCCGGGCCCGC
AGGGGGCGTCGGCACCCCCTCCGCCCTCCGGGCCCAAGCGCGAGCTCACT
TGGAGGAACGCGCACGGGAAAGGGCGCGGTTACGAGACTACCATCATCAT
CACACAGACGGGGAGGAGGAGGGTGGAGAGGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:202329..203861-

>mRNA_S-ischiensis_contig9.20399.1 ID=mRNA_S-ischiensis_contig9.20399.1|Name=mRNA_S-ischiensis_contig9.20399.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1044bp|location=Sequence derived from alignment at S-ischiensis_contig9:202329..203861- (Schizocladia ischiensis KU_0333)
GGGGGTGGGTCGTCTTCTGAGGTGTTTGAGCTGACACGGGAGGAGTTGGA
GGCGGTGCCCCGGTTGAAGGAGGGCGATTTCCTCCGTGCGGAGGTGGAGG
AGCTCGTGCTGAACTGCGTCAACGCTGACCCTAACTACGGGTCCATGTGG
TTCCACTGCCGCCACCGCCCCTCGGACACGGCCAAGGGGGTGGGTCGTCT
TCTGAGGTGTTTGAGCTGACACGGGAGGAGTTGGAGGCGGTGCCCCGGTT
GAAGGAGGGCGATTTCCTCCGTGCGGAGGTGGAGGAGCTCGTGCTGAACT
GCGTCAACGCTGACCCTAACTACGGGTCCATGTGGTTCCACTGCCGCCAC
CGCCCCTCGGACACGGCCAAGTCTGTGCTGATGATGGCAAAGCTGATGAT
GGCGGACGAGCTCACCAAGCTGCAGCCCGTGTACCTGGCGGCCATGGTGC
GCTGCCTCCTGCTGGAGGATGACATGGACGCCTACGTGGCCTCCACAACT
CCCAAGGAGGAGGATGCCGGTCTGTGCTGATGATGGCAAAGCTGATGATG
GCGGACGAGCTCACCAAGCTGCAGCCCGTGTACCTGGCGGCCATGGTGCG
CTGCCTCCTGCTGGAGGATGACATGGACGCCTACGTGGCCTCCACAACTC
CCAAGGAGGAGGATGCCGCCGCAGCCGCCGCCGCCTTGGCCACCCCAGCC
GCCCCGGCCACACCCGGGCCCGCAGGGGGCGTCGGCACCCCCTCCGCCCT
CCGGGCCCAAGCGCGAGCTCACTTGGAGGAACGCGCACGGGAAAGGGCGC
GGTTACGAGACTACCATCATCATCACACAGACGGGGAGGAGGAGGGTGGA
GAGGGGCCGCAGCCGCCGCCGCCTTGGCCACCCCAGCCGCCCCGGCCACA
CCCGGGCCCGCAGGGGGCGTCGGCACCCCCTCCGCCCTCCGGGCCCAAGC
GCGAGCTCACTTGGAGGAACGCGCACGGGAAAGGGCGCGGTTACGAGACT
ACCATCATCATCACACAGACGGGGAGGAGGAGGGTGGAGAGGGG
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