mRNA_S-ischiensis_contig9.20397.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20397.1
Unique NamemRNA_S-ischiensis_contig9.20397.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20397.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:196326..196780 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size457
Cds size357
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817370.2294617-UTR-S-ischiensis_contig9:196325..1964231622817370.2294617-UTR-S-ischiensis_contig9:196325..196423Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 196326..196423 +
1695741062.762733-UTR-S-ischiensis_contig9:196325..1964231695741062.762733-UTR-S-ischiensis_contig9:196325..196423Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 196326..196423 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817370.2422535-CDS-S-ischiensis_contig9:196423..1967801622817370.2422535-CDS-S-ischiensis_contig9:196423..196780Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 196424..196780 +
1695741062.777747-CDS-S-ischiensis_contig9:196423..1967801695741062.777747-CDS-S-ischiensis_contig9:196423..196780Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 196424..196780 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20397.1prot_S-ischiensis_contig9.20397.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 196424..196780 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20397.1

>prot_S-ischiensis_contig9.20397.1 ID=prot_S-ischiensis_contig9.20397.1|Name=mRNA_S-ischiensis_contig9.20397.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=119bp
MHSHVLQRSSEYSTVPYLLRMSCQVSSTKQFGNRSVPRATVCTKCFELLV
VMKVVCGVRPPILTWHTAASTTEPSGVGHTVVLLCSLVFLVSARCLVLAA
QGSRAHTVFPVCSLLRCRY
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mRNA from alignment at S-ischiensis_contig9:196326..196780+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20397.1 ID=mRNA_S-ischiensis_contig9.20397.1|Name=mRNA_S-ischiensis_contig9.20397.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=455bp|location=Sequence derived from alignment at S-ischiensis_contig9:196326..196780+ (Schizocladia ischiensis KU_0333)
CTGTGCTCCAGTGCCACCAAGGCTTGAGCACACATGATGATGCCGATACC
GGGATGGTTTTCTAATTAGAAGTACTTGGTCGTATTAGAGTAGTAGGAAT
GCACAGCCATGTACTTCAAAGAAGTTCGGAGTACAGTACAGTACCTTACC
TACTGCGGATGTCCTGCCAGGTATCAAGTACGAAGCAGTTTGGAAATAGG
AGCGTTCCCAGAGCTACTGTATGTACAAAGTGCTTCGAACTACTAGTAGT
AATGAAGGTCGTATGCGGTGTTCGTCCGCCAATCCTTACCTGGCACACGG
CTGCATCTACTACTGAGCCTTCTGGTGTCGGCCACACCGTTGTGCTGTTG
TGTAGCCTCGTGTTCCTGGTGTCAGCAAGGTGTTTGGTGCTTGCGGCACA
GGGGTCCCGCGCTCACACGGTGTTCCCTGTTTGTTCACTTCTCCGCTGCA
GGTAC
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:196326..196780+

>mRNA_S-ischiensis_contig9.20397.1 ID=mRNA_S-ischiensis_contig9.20397.1|Name=mRNA_S-ischiensis_contig9.20397.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=714bp|location=Sequence derived from alignment at S-ischiensis_contig9:196326..196780+ (Schizocladia ischiensis KU_0333)
ATGCACAGCCATGTACTTCAAAGAAGTTCGGAGTACAGTACAGTACCTTA
CCTACTGCGGATGTCCTGCCAGGTATCAAGTACGAAGCAGTTTGGAAATA
GGAGCGTTCCCAGAGCTACTGTATGTACAAAGTGCTTCGAACTACTAGTA
GTAATGAAGGTCGTATGCGGTGTTCGTCCGCCAATCCTTACCTGGCACAC
GGCTGCATCTACTACTGAGCCTTCTGGTGTCGGCCACACCGTTGTGCTGT
TGTGTAGCCTCGTGTTCCTGGTGTCAGCAAGGTGTTTGGTGCTTGCGGCA
CAGGGGTCCCGCGCTCACACGGTGTTCCCTGTTTGTTCACTTCTCCGCTG
CAGGTACATGCACAGCCATGTACTTCAAAGAAGTTCGGAGTACAGTACAG
TACCTTACCTACTGCGGATGTCCTGCCAGGTATCAAGTACGAAGCAGTTT
GGAAATAGGAGCGTTCCCAGAGCTACTGTATGTACAAAGTGCTTCGAACT
ACTAGTAGTAATGAAGGTCGTATGCGGTGTTCGTCCGCCAATCCTTACCT
GGCACACGGCTGCATCTACTACTGAGCCTTCTGGTGTCGGCCACACCGTT
GTGCTGTTGTGTAGCCTCGTGTTCCTGGTGTCAGCAAGGTGTTTGGTGCT
TGCGGCACAGGGGTCCCGCGCTCACACGGTGTTCCCTGTTTGTTCACTTC
TCCGCTGCAGGTAC
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