mRNA_S-ischiensis_contig9.20396.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20396.1
Unique NamemRNA_S-ischiensis_contig9.20396.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20396.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:194741..198026 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size1364
Cds size756
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817362.7784169-UTR-S-ischiensis_contig9:194740..1947811622817362.7784169-UTR-S-ischiensis_contig9:194740..194781Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 194741..194781 +
1695741057.8553367-UTR-S-ischiensis_contig9:194740..1947811695741057.8553367-UTR-S-ischiensis_contig9:194740..194781Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 194741..194781 +
1622817362.827419-UTR-S-ischiensis_contig9:196085..1961141622817362.827419-UTR-S-ischiensis_contig9:196085..196114Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 196086..196114 +
1695741057.9107463-UTR-S-ischiensis_contig9:196085..1961141695741057.9107463-UTR-S-ischiensis_contig9:196085..196114Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 196086..196114 +
1622817362.8394008-UTR-S-ischiensis_contig9:197401..1976251622817362.8394008-UTR-S-ischiensis_contig9:197401..197625Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 197402..197625 +
1695741057.9245932-UTR-S-ischiensis_contig9:197401..1976251695741057.9245932-UTR-S-ischiensis_contig9:197401..197625Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 197402..197625 +
1622817362.850307-UTR-S-ischiensis_contig9:197712..1980261622817362.850307-UTR-S-ischiensis_contig9:197712..198026Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 197713..198026 +
1695741057.938799-UTR-S-ischiensis_contig9:197712..1980261695741057.938799-UTR-S-ischiensis_contig9:197712..198026Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 197713..198026 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817362.7900798-CDS-S-ischiensis_contig9:194781..1952771622817362.7900798-CDS-S-ischiensis_contig9:194781..195277Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 194782..195277 +
1695741057.8744612-CDS-S-ischiensis_contig9:194781..1952771695741057.8744612-CDS-S-ischiensis_contig9:194781..195277Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 194782..195277 +
1622817362.803921-CDS-S-ischiensis_contig9:195578..1957341622817362.803921-CDS-S-ischiensis_contig9:195578..195734Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 195579..195734 +
1695741057.8872027-CDS-S-ischiensis_contig9:195578..1957341695741057.8872027-CDS-S-ischiensis_contig9:195578..195734Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 195579..195734 +
1622817362.8169296-CDS-S-ischiensis_contig9:195981..1960851622817362.8169296-CDS-S-ischiensis_contig9:195981..196085Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 195982..196085 +
1695741057.898954-CDS-S-ischiensis_contig9:195981..1960851695741057.898954-CDS-S-ischiensis_contig9:195981..196085Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 195982..196085 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20396.1prot_S-ischiensis_contig9.20396.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 194782..196085 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20396.1

>prot_S-ischiensis_contig9.20396.1 ID=prot_S-ischiensis_contig9.20396.1|Name=mRNA_S-ischiensis_contig9.20396.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=252bp
MAPKGKGLGLAHAPRPHNAHCTVSSSQSFVESVQGTNRGDGGDGSPLPPR
PCTGCPGRSRRHLLGDICGFGDGVVHHDCSAAADRPRERGCDLRGPRRAG
VEGPRNGCVVGGRAHGRGQHYIDDDFSAIFLRLFDPMRDAPAPAARHPLC
PPAAPRPRLQHLHASACLKAVHEALRGTAWSPSPRAGAAAPQPLQGSSGP
APLQAHPGRPHKARSPRRSLRLASSVSSWTSLTQWRPPRASSPLTCPTGK
G*
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mRNA from alignment at S-ischiensis_contig9:194741..198026+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20396.1 ID=mRNA_S-ischiensis_contig9.20396.1|Name=mRNA_S-ischiensis_contig9.20396.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3286bp|location=Sequence derived from alignment at S-ischiensis_contig9:194741..198026+ (Schizocladia ischiensis KU_0333)
GGGACGTTGGGAGATGAAGATGGGGCTCCCCACTGCCTGGCATGGCGCCG
AAAGGCAAGGGCCTGGGCCTCGCGCATGCCCCCCGCCCTCATAATGCGCA
TTGCACGGTATCGTCTTCCCAGAGCTTTGTCGAGTCTGTTCAAGGGACGA
ACCGTGGCGATGGCGGTGATGGATCTCCTCTTCCTCCTCGGCCATGCACC
GGCTGCCCTGGTCGCAGCCGTCGCCACCTACTTGGTGACATTTGTGGTTT
CGGCGATGGGGTGGTTCACCACGACTGCAGTGCCGCCGCCGACCGCCCAC
GAGAGCGCGGGTGCGATCTCCGAGGACCACGACGCGCCGGGGTTGAAGGC
CCTCGAAATGGATGTGTTGTCGGCGGACGGGCACACGGTCGGGGACAGCA
CTACATCGACGACGACTTCTCTGCCATCTTCCTCAGGCTCTTCGACCCAA
TGCGAGACGCGCCTGCGCCAGCTGCACGGCACCCCCTGTGCCCACCAGCA
GCGCCGCGACCCAGGCTTCAACACCTTCACGCCTCTGGTGAGCAAACCGT
AAGGTGCTCTTTGGCAAGTACGGCCACATTGTGGCCTGGTCTTTGATGCG
TAAACGTCCCTGGTGACAATGCAAACGTGTTGCTGCCATGAACCACATGC
ACACGCACTCACTCGTGCTCGCACGCCGCTCGCTCTCGCTCACGGTCCCC
CCTCCCCCCACAACCTCTCTTCCCCCCTCTCTCCCTCCCTGTGTGCCCCG
CCCCCCCCCGCCCCACCTCTCCCTTGCGCCCCGCTCGTTCCCACCCTCCC
CTCCCCTCCCCTTCCCCCACCCCAACACTGTCTTGCAGCTTGTCTCAAAG
CAGTCCACGAGGCCCTTCGAGGAACTGCTTGGTCACCAAGTCCTCGTGCT
GGAGCGGCAGCACCTCAACCGTTGCAAGGATCATCGGGCCCTGCACCCCT
TCAAGCCCACCCAGGGAGACCGCACAAAGCACGGTCACCAAGAAGTGAGC
AAGTGATGGGCTTGGTGTCCCGTGGGACCAGGAGGGTGCTATAGGTGCTG
TACATCAGTTTTCTACTCGCAGTTTACTGTACCTAGTACTCGAGTATATA
GTACAGTACTCTGTGCTGGTGGTACTGTTCACATTAGAGAGAACATGCTC
GCTATCACCAGGCCTCACGCACCCCGCGGATACCCCCCGCCGCCCCCCCG
CCTGCCCGCACGCATGCCTCCCCACCTGCCCACCACACCAGGGTCCTTGC
GGCTTGCCAGCAGCGTGTCAAGCTGGACAAGTCTGACACAGTGGCGCCCA
CCACGTGCGAGTTCTCCCCTGACTTGTCCCACAGGGAAAGGGTGAACGAC
AGGCTGCTCAAGGGCAAGCGGGAGGTAAGCTATGCATACGTTCGCTGCCC
GCCACTCGCTGCCAACGCTCCACACGCCCGCCCTGCCTCACCCCCGGCCA
CTGCTCTCCCCCCCTTTGTTCCCCTCCTCCTCCTCCTCCCCCGCCTCCTC
CTCCCCCTCCTCGTCCTTCTCCTCCTCCTACTCCTACTCCTCCTCCGACT
CCGACTCCCCCTCCCCCTCCCCCTCCCCCTCCCCCCTGTGCTCCAGTGCC
ACCAAGGCTTGAGCACACATGATGATGCCGATACCGGGATGGTTTTCTAA
TTAGAAGTACTTGGTCGTATTAGAGTAGTAGGAATGCACAGCCATGTACT
TCAAAGAAGTTCGGAGTACAGTACAGTACCTTACCTACTGCGGATGTCCT
GCCAGGTATCAAGTACGAAGCAGTTTGGAAATAGGAGCGTTCCCAGAGCT
ACTGTATGTACAAAGTGCTTCGAACTACTAGTAGTAATGAAGGTCGTATG
CGGTGTTCGTCCGCCAATCCTTACCTGGCACACGGCTGCATCTACTACTG
AGCCTTCTGGTGTCGGCCACACCGTTGTGCTGTTGTGTAGCCTCGTGTTC
CTGGTGTCAGCAAGGTGTTTGGTGCTTGCGGCACAGGGGTCCCGCGCTCA
CACGGTGTTCCCTGTTTGTTCACTTCTCCGCTGCAGGTACGCGGTGTGGT
GGTTCTGTCCACTCTGTCACTGCCTGCCGCACCGTCGCCTGCCACACGCC
CCCCCCCCCCGGGGAGCACACACGCCCCCCGTCCCATTCCCCTCCCTCCT
CTTCCTCTCCCCCACCCTCCCCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
TCCTCCTCCTCCCCGCCCACCTCCCCCTCCTCCTCTTCTCCCCTTCCCCA
CACAAATTTCCCCTGGCGAGCCATAAGGAAGGGCCACTGCTGAGGTCTCT
AGTGACGTGGCCCGCACCTCGCCCCGTGTTGTTCCTGTTAATACTACAGT
ACTCGTACAGTTCTACAGTGCTTAGTACTTGCAAGTACTTGTTATGCATT
AGTGTACACGTCACTTGGTGACCACACCAACTACAGCAACTAGACTTGTT
GGAAGTACTGCAGCACCTGTACAAGTACGAATACAGTACTGTGGGTGGGT
GATGCTTGTCTTGAGACAGACCGCACCGCAGAAACAACTGTAAACCCATG
TGCCAGCGCCGCCTGTTCCCTGGTGACCAATTCCCCCTCCCCTCCCCTCC
CCTCCCCTCCCCACCTCCCCCCCCCCCCCTCCGGTCCCCTCCCGTCGCCT
CCCCTCCCCAGCTCATCCTGTCTCCACGTCTCCTCCGCCCCTCCCTGCCC
CAGCCCACCCGCCAGTGAGGCGCGCCCGGCATCTGCAGCAAGTTCCAGCA
GCAACAAAAACAGCAACAGCAGCAACAACGACGTCAGCAGCAGCAAAAAC
AACAGCTACAGCTACAGCTGCGACAACAACTGAAGCAGCAGCAACAACAA
CGTCGGCAGCAGCAACATCAACAACAGCAGCAACAGCGGCAGCGGCAGCA
GCAGCAGCAGCGGCGGCGGCGCAAAGGTTGCTGCTGCCGCCGCCGCCGCC
ACCGCTGCCGCTGCCGCAACAGCAACAGCAACAACCACAGCAACAACAAC
AACTGAACAAGAAGCCTGGCTGCAGGCATCACCAACGAGGGCTGTGATGC
GCTCCCTCTGCGCCTTTCCACCTCCAGGGGTGTTGCACCGTGGTGGCAGC
GGCGGGGTATGGGTGGGGGGCGGATGGCAGCAGCGGCCTCCGTTGGCCCG
GCATGGAGGCTCGGACTCTGTCTGAGCTGAGTGCAGTACAATAGCTGGGT
AGCGTGAGGCCTCCCTGCGCGAGGATTCTGACCGCGCTGGAGGCTGCACG
GCTCCGAATTGGCCTGGCCCACCTCCCTCTCTCCCA
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:194741..198026+

>mRNA_S-ischiensis_contig9.20396.1 ID=mRNA_S-ischiensis_contig9.20396.1|Name=mRNA_S-ischiensis_contig9.20396.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1512bp|location=Sequence derived from alignment at S-ischiensis_contig9:194741..198026+ (Schizocladia ischiensis KU_0333)
ATGGCGCCGAAAGGCAAGGGCCTGGGCCTCGCGCATGCCCCCCGCCCTCA
TAATGCGCATTGCACGGTATCGTCTTCCCAGAGCTTTGTCGAGTCTGTTC
AAGGGACGAACCGTGGCGATGGCGGTGATGGATCTCCTCTTCCTCCTCGG
CCATGCACCGGCTGCCCTGGTCGCAGCCGTCGCCACCTACTTGGTGACAT
TTGTGGTTTCGGCGATGGGGTGGTTCACCACGACTGCAGTGCCGCCGCCG
ACCGCCCACGAGAGCGCGGGTGCGATCTCCGAGGACCACGACGCGCCGGG
GTTGAAGGCCCTCGAAATGGATGTGTTGTCGGCGGACGGGCACACGGTCG
GGGACAGCACTACATCGACGACGACTTCTCTGCCATCTTCCTCAGGCTCT
TCGACCCAATGCGAGACGCGCCTGCGCCAGCTGCACGGCACCCCCTGTGC
CCACCAGCAGCGCCGCGACCCAGGCTTCAACACCTTCACGCCTCTGATGG
CGCCGAAAGGCAAGGGCCTGGGCCTCGCGCATGCCCCCCGCCCTCATAAT
GCGCATTGCACGGTATCGTCTTCCCAGAGCTTTGTCGAGTCTGTTCAAGG
GACGAACCGTGGCGATGGCGGTGATGGATCTCCTCTTCCTCCTCGGCCAT
GCACCGGCTGCCCTGGTCGCAGCCGTCGCCACCTACTTGGTGACATTTGT
GGTTTCGGCGATGGGGTGGTTCACCACGACTGCAGTGCCGCCGCCGACCG
CCCACGAGAGCGCGGGTGCGATCTCCGAGGACCACGACGCGCCGGGGTTG
AAGGCCCTCGAAATGGATGTGTTGTCGGCGGACGGGCACACGGTCGGGGA
CAGCACTACATCGACGACGACTTCTCTGCCATCTTCCTCAGGCTCTTCGA
CCCAATGCGAGACGCGCCTGCGCCAGCTGCACGGCACCCCCTGTGCCCAC
CAGCAGCGCCGCGACCCAGGCTTCAACACCTTCACGCCTCTGCTTGTCTC
AAAGCAGTCCACGAGGCCCTTCGAGGAACTGCTTGGTCACCAAGTCCTCG
TGCTGGAGCGGCAGCACCTCAACCGTTGCAAGGATCATCGGGCCCTGCAC
CCCTTCAAGCCCACCCAGGGAGACCGCACAAAGCACGGTCACCAAGAACT
TGTCTCAAAGCAGTCCACGAGGCCCTTCGAGGAACTGCTTGGTCACCAAG
TCCTCGTGCTGGAGCGGCAGCACCTCAACCGTTGCAAGGATCATCGGGCC
CTGCACCCCTTCAAGCCCACCCAGGGAGACCGCACAAAGCACGGTCACCA
AGAAGGTCCTTGCGGCTTGCCAGCAGCGTGTCAAGCTGGACAAGTCTGAC
ACAGTGGCGCCCACCACGTGCGAGTTCTCCCCTGACTTGTCCCACAGGGA
AAGGGTGAGGTCCTTGCGGCTTGCCAGCAGCGTGTCAAGCTGGACAAGTC
TGACACAGTGGCGCCCACCACGTGCGAGTTCTCCCCTGACTTGTCCCACA
GGGAAAGGGTGA
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