mRNA_S-ischiensis_contig9.20394.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20394.1
Unique NamemRNA_S-ischiensis_contig9.20394.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20394.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:186421..187365 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size306
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817362.7299807-CDS-S-ischiensis_contig9:186420..1864681622817362.7299807-CDS-S-ischiensis_contig9:186420..186468Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 186421..186468 +
1695741057.831083-CDS-S-ischiensis_contig9:186420..1864681695741057.831083-CDS-S-ischiensis_contig9:186420..186468Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 186421..186468 +
1622817362.7413576-CDS-S-ischiensis_contig9:187108..1873631622817362.7413576-CDS-S-ischiensis_contig9:187108..187363Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 187109..187363 +
1695741057.843166-CDS-S-ischiensis_contig9:187108..1873631695741057.843166-CDS-S-ischiensis_contig9:187108..187363Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 187109..187363 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20394.1prot_S-ischiensis_contig9.20394.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 186421..187363 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20394.1

>prot_S-ischiensis_contig9.20394.1 ID=prot_S-ischiensis_contig9.20394.1|Name=mRNA_S-ischiensis_contig9.20394.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=101bp
DASLTVNPDGTHTYSKVSMALTNTPTTPTTTSLGPSSLSTTRATTGLPMS
LGLEEGGGDGDADIDALLGMDLDTTPPLSAANPPQGPGGTTFAAAAAAAA
S
back to top

mRNA from alignment at S-ischiensis_contig9:186421..187365+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20394.1 ID=mRNA_S-ischiensis_contig9.20394.1|Name=mRNA_S-ischiensis_contig9.20394.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=945bp|location=Sequence derived from alignment at S-ischiensis_contig9:186421..187365+ (Schizocladia ischiensis KU_0333)
GACGCATCCTTGACAGTGAACCCTGATGGGACGCACACATACAGCAAGGT
GAACTACTCCTCCTTTTCTCCCCTTCCCCACACAAACTTCCCCTGGCGAG
CTAAGGAAGGGCCACTGTTGACGTCTTTTGTGACGTGGCCTGCACCTCAC
CCCGTGTTTTTCCTGTTAATGCTGCAATGTAGAGTACTTGTACTGTTGAC
AACATGTTTTGTGTTTGAACGGCAACTGGCACCGAACAGATTGGAGACAG
GTTGTGACCCTTTTCCGGCATTTTTATCCGGCTGCGAAATGTGCTCGGAA
GTAATTTTCTCAAGCACAGTGTGAATGTACAGTACCTCAAAGTGCTCGAG
CAGTCACCTTGTGCTTCTTGCTCTTTAGGGCAGGGAGTGTGAGTGTTGCC
CTCGCGCCCTTGTTCCGAGAGGCCAGAGCAATCTGTCTGCATGCGTTGAT
TCACCCCTGGATGTTTGATTTCAATATTCATCTGTCAAGGACTTCCACGT
GTATACTACGCAGTATGTACTCACGTTGTGCTTGCCATAGTCCCCAGACC
ATTGATCACTTAGTTAGTGTACGAGTGCAGTACAGACACAGCACGATCAT
AGAACAGTACTCGCACAACAGAGCTCCACCTTGCTCTATGTTTGCTTGTA
TCTTACAGCATTGCCCCCCACCCCTACCCCCCCCCCAGGTGTCAATGGCC
CTGACCAACACCCCCACCACCCCCACCACCACTTCCCTGGGCCCCTCCTC
CCTCTCCACCACGAGAGCAACCACGGGCTTGCCCATGAGCCTTGGCCTGG
AGGAGGGGGGCGGGGACGGCGACGCCGACATCGACGCCCTGCTGGGGATG
GACTTGGACACAACGCCTCCCTTGTCTGCCGCAAACCCGCCGCAAGGGCC
TGGGGGCACCACCTTCGCCGCGGCTGCCGCCGCCGCCGCTTCGGC
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig9:186421..187365+

>mRNA_S-ischiensis_contig9.20394.1 ID=mRNA_S-ischiensis_contig9.20394.1|Name=mRNA_S-ischiensis_contig9.20394.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=606bp|location=Sequence derived from alignment at S-ischiensis_contig9:186421..187365+ (Schizocladia ischiensis KU_0333)
GACGCATCCTTGACAGTGAACCCTGATGGGACGCACACATACAGCAAGGA
CGCATCCTTGACAGTGAACCCTGATGGGACGCACACATACAGCAAGGTGT
CAATGGCCCTGACCAACACCCCCACCACCCCCACCACCACTTCCCTGGGC
CCCTCCTCCCTCTCCACCACGAGAGCAACCACGGGCTTGCCCATGAGCCT
TGGCCTGGAGGAGGGGGGCGGGGACGGCGACGCCGACATCGACGCCCTGC
TGGGGATGGACTTGGACACAACGCCTCCCTTGTCTGCCGCAAACCCGCCG
CAAGGGCCTGGGGGCACCACCTTCGCCGCGGCTGCCGCCGCCGCCGCTTC
GGTGTCAATGGCCCTGACCAACACCCCCACCACCCCCACCACCACTTCCC
TGGGCCCCTCCTCCCTCTCCACCACGAGAGCAACCACGGGCTTGCCCATG
AGCCTTGGCCTGGAGGAGGGGGGCGGGGACGGCGACGCCGACATCGACGC
CCTGCTGGGGATGGACTTGGACACAACGCCTCCCTTGTCTGCCGCAAACC
CGCCGCAAGGGCCTGGGGGCACCACCTTCGCCGCGGCTGCCGCCGCCGCC
GCTTCG
back to top