mRNA_S-ischiensis_contig9.20390.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20390.1
Unique NamemRNA_S-ischiensis_contig9.20390.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig9.20390.1 vs. uniprot
Match: D8LN43_ECTSI (DIS3-like exonuclease 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN43_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 1.110e-18
Identity = 55/113 (48.67%), Postives = 65/113 (57.52%), Query Frame = 1 
Query:    1 VLVSGLSGLNRAMHQDSVALRLLPRHRWCPPMGRRRLVHAPEAGNLDPGEQV-----AGDGGQPGDNGQDGEGRHRQEPPPGAVPTGVVVGVLERKWRPFVATIPPEEAQDRG 324
            VLV+G  G+NR+MH D+VA+ LLPR RW  P  R+RL HA E     P E+      AGDGG               E PPGA+PTG VVGVLE   RP+V TIP EE   +G
Sbjct:  333 VLVAGREGMNRSMHGDTVAVTLLPRRRWRAPTDRKRLTHAAEEEEDIPLEEFQDAEGAGDGG---------------EAPPGAMPTGFVVGVLEEGRRPYVVTIPSEETTGQG 430
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BLAST of mRNA_S-ischiensis_contig9.20390.1 vs. uniprot
Match: A0A7R8X802_9CRUS (Hypothetical protein n=1 Tax=Darwinula stevensoni TaxID=69355 RepID=A0A7R8X802_9CRUS)

HSP 1 Score: 62.0 bits (149), Expect = 7.840e-9
Identity = 40/109 (36.70%), Postives = 57/109 (52.29%), Query Frame = 1 
Query:    1 VLVSGLSGLNRAMHQDSVALRLLPRHRWCPPMGRRRLVHAPEAGNLDPGEQVAGDGGQPGDNGQDGEGRHRQEPPPGAVPTGVVVGVLERKWRPFVATIPPEEAQDRGL 327
            VL+ GLS LNRA+H D VA+ LLP+++W  P G        + G+     +V    G+P D        H  E    A PTG VVG+++RKWR +   + P   +DR +
Sbjct:  275 VLIQGLSHLNRAVHDDIVAVELLPQNQWSAPSGIVLEEKVDDQGDAVEENEV----GEPKD--------HLSE----AQPTGKVVGIIKRKWRHYCGILQPSIIKDRNM 367
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BLAST of mRNA_S-ischiensis_contig9.20390.1 vs. uniprot
Match: A0A1A8QAZ5_9TELE (DIS3-like exonuclease 1 (Fragment) n=4 Tax=Nothobranchiidae TaxID=405002 RepID=A0A1A8QAZ5_9TELE)

HSP 1 Score: 59.3 bits (142), Expect = 6.720e-8
Identity = 43/103 (41.75%), Postives = 50/103 (48.54%), Query Frame = 1 
Query:    1 VLVSGLSGLNRAMHQDSVALRLLPRHRWCPPMGRRRLVHAPEAGNLDPGEQVAGDGGQPGDNGQDGEGRHRQEPPPGAVPTGVVVGVLERKWRPFVATIPPEE 309
            VLV G+   NRA+H DSV L LLPR  W      R  V A   G +D  E+  GD                 E  P  +PTG VVGVL+R WR +V T PP E
Sbjct:  270 VLVYGVRNRNRAVHGDSVVLELLPRSEW------RGKVTALTEGPVD--ERTGGD----------------SESKP--MPTGRVVGVLQRNWRDYVVTFPPRE 346
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BLAST of mRNA_S-ischiensis_contig9.20390.1 vs. uniprot
Match: A0A1A8V7Q9_NOTFU (DIS3-like exonuclease 1 n=17 Tax=Nothobranchius TaxID=28779 RepID=A0A1A8V7Q9_NOTFU)

HSP 1 Score: 59.3 bits (142), Expect = 6.940e-8
Identity = 43/103 (41.75%), Postives = 50/103 (48.54%), Query Frame = 1 
Query:    1 VLVSGLSGLNRAMHQDSVALRLLPRHRWCPPMGRRRLVHAPEAGNLDPGEQVAGDGGQPGDNGQDGEGRHRQEPPPGAVPTGVVVGVLERKWRPFVATIPPEE 309
            VLV G+   NRA+H DSV L LLPR  W      R  V A   G +D  E+  GD                 E  P  +PTG VVGVL+R WR +V T PP E
Sbjct:  270 VLVYGVRNRNRAVHGDSVVLELLPRSEW------RGKVTALTEGPVD--ERTGGD----------------SESKP--MPTGRVVGVLQRNWRDYVVTFPPRE 346
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BLAST of mRNA_S-ischiensis_contig9.20390.1 vs. uniprot
Match: A0A3B3SWD3_9TELE (DIS3 exosome endoribonuclease and 3'-5' exoribonuclease n=3 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=A0A3B3SWD3_9TELE)

HSP 1 Score: 58.5 bits (140), Expect = 1.280e-7
Identity = 39/99 (39.39%), Postives = 48/99 (48.48%), Query Frame = 1 
Query:    1 VLVSGLSGLNRAMHQDSVALRLLPRHRWCPPMGRRRLVHAPEAG--NLDPGEQVAGDGGQPGDNGQDGEGRHRQEPPPGAV--PTGVVVGVLERKWRPF 285
            VL+ GL  LNRA+HQD VA+ LLPR  W  P     L   P+A   NL+    V G                    P  A+  PTG VVG+++R WRPF
Sbjct:  272 VLIQGLQNLNRAVHQDVVAMELLPREAWASPSSLVLLDEGPKADSENLEEENVVRG------------------RLPDNALLKPTGKVVGIIKRNWRPF 352
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BLAST of mRNA_S-ischiensis_contig9.20390.1 vs. uniprot
Match: A0A0S7MJS1_9TELE (DI3L1 (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7MJS1_9TELE)

HSP 1 Score: 55.5 bits (132), Expect = 2.930e-7
Identity = 39/104 (37.50%), Postives = 50/104 (48.08%), Query Frame = 1 
Query:    1 VLVSGLSGLNRAMHQDSVALRLLPRHRWCPPMGRRRLVHAPEAGNLDPGEQVAGDGGQPGDNGQDGEGRHRQEPPPGAVPTGVVVGVLERKWRPFVATIPPEEA 312
            VLV+G    NRA+H D VA+ LLPR  W      R  V A   G   P ++ + D  +P                   VPTG VVG+L+R WR +V T PP +A
Sbjct:   13 VLVAGSKSRNRAVHGDLVAVELLPRAEW------RGKVTALSEG---PADERSDDETKP-------------------VPTGRVVGILQRNWRDYVVTFPPRDA 88
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BLAST of mRNA_S-ischiensis_contig9.20390.1 vs. uniprot
Match: UPI001560EF14 (DIS3-like exonuclease 1 n=2 Tax=Acipenser ruthenus TaxID=7906 RepID=UPI001560EF14)

HSP 1 Score: 57.4 bits (137), Expect = 3.280e-7
Identity = 40/112 (35.71%), Postives = 52/112 (46.43%), Query Frame = 1 
Query:    1 VLVSGLSGLNRAMHQDSVALRLLPRHRWCPPMGRRRLVHAPEAGNLDPGEQVAGDGGQPGDNGQDGEGRHRQEPPPGAVPTGVVVGVLERKWRPFVATIPP-EEAQDRGLDT 333
            VLV G    NRA+H D VA+ LLPR  W    GR   +   E                       GE R  +E     +PTG VVG+++R WR +V T PP EE Q +G ++
Sbjct:  272 VLVCGGKQRNRALHGDVVAVELLPRSEW---RGRATALSQSE-----------------------GEDRLAEELQSQPMPTGTVVGIIQRNWRDYVVTFPPKEEVQSQGKNS 357
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BLAST of mRNA_S-ischiensis_contig9.20390.1 vs. uniprot
Match: A0A4W4H3E9_ELEEL (DIS3-like exonuclease 1 n=5 Tax=Electrophorus electricus TaxID=8005 RepID=A0A4W4H3E9_ELEEL)

HSP 1 Score: 57.4 bits (137), Expect = 3.290e-7
Identity = 39/103 (37.86%), Postives = 51/103 (49.51%), Query Frame = 1 
Query:    1 VLVSGLSGLNRAMHQDSVALRLLPRHRWCPPMGRRRLVHAPEAGNLDPGEQVAGDGGQPGDNGQDGEGRHRQEPPPGAVPTGVVVGVLERKWRPFVATIPPEE 309
            VL+SG+   NRA+  DSVA+ LLPR  W    GR   + A +      GE+ AG+  Q                    +PTG VVG+L+R WR +V T PP E
Sbjct:  272 VLISGMKHRNRAIQGDSVAVELLPRSEW---KGRTTALTAGQ------GEERAGEDTQS-----------------QLMPTGRVVGILQRNWRDYVVTFPPRE 348
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BLAST of mRNA_S-ischiensis_contig9.20390.1 vs. uniprot
Match: A0A2D4BNP4_PYTIN (DIS3-like exonuclease 1 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BNP4_PYTIN)

HSP 1 Score: 57.4 bits (137), Expect = 3.350e-7
Identity = 41/108 (37.96%), Postives = 52/108 (48.15%), Query Frame = 1 
Query:    1 VLVSGLSGLNRAMHQDSVALRLLPRHRWCPPMGRRRLVHAPEAGNLDPGEQVAGDGGQPGDNGQDGEGRHR---------QEPPPGAVPTGVVVGVLERKWRPFVATI 297
            VLV G   +NR +H D V ++LLPR +W  P   R+LVH      +   EQ               E  H           EPP  AVPTGVVVGVL+R+ +  VAT+
Sbjct:  591 VLVLGRDAMNRGVHGDKVVVQLLPRAQWRAPRSDRQLVHYASEDTV---EQAP-------------EHEHELXXXXXXXXXEPPSDAVPTGVVVGVLQRQSQFIVATV 682
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BLAST of mRNA_S-ischiensis_contig9.20390.1 vs. uniprot
Match: A0A553PWJ3_9TELE (DIS3-like exonuclease 1 n=1 Tax=Danionella translucida TaxID=623744 RepID=A0A553PWJ3_9TELE)

HSP 1 Score: 57.0 bits (136), Expect = 4.470e-7
Identity = 41/109 (37.61%), Postives = 53/109 (48.62%), Query Frame = 1 
Query:    1 VLVSGLSGLNRAMHQDSVALRLLPRHRWCPPMGRRRLVHAPEAGNLDPGEQVAGDGGQPGDNGQDGEGRHRQEPPPGAVPTGVVVGVLERKWRPFVATIPP-EEAQDRG 324
            VLVSG+   NRA+H D V + L+PR+ W                    G  +A   GQ       GE R  ++     +PTG VVGVL+R WR +V T PP EE Q +G
Sbjct:  242 VLVSGVKHRNRAVHGDMVVIELMPRNEW-------------------KGRTMALTEGQ-------GEERALEDTQSQPMPTGRVVGVLQRNWRDYVVTFPPLEEVQTQG 324
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20390.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LN43_ECTSI1.110e-1848.67DIS3-like exonuclease 1 n=1 Tax=Ectocarpus silicul... [more]
A0A7R8X802_9CRUS7.840e-936.70Hypothetical protein n=1 Tax=Darwinula stevensoni ... [more]
A0A1A8QAZ5_9TELE6.720e-841.75DIS3-like exonuclease 1 (Fragment) n=4 Tax=Nothobr... [more]
A0A1A8V7Q9_NOTFU6.940e-841.75DIS3-like exonuclease 1 n=17 Tax=Nothobranchius Ta... [more]
A0A3B3SWD3_9TELE1.280e-739.39DIS3 exosome endoribonuclease and 3'-5' exoribonuc... [more]
A0A0S7MJS1_9TELE2.930e-737.50DI3L1 (Fragment) n=1 Tax=Poeciliopsis prolifica Ta... [more]
UPI001560EF143.280e-735.71DIS3-like exonuclease 1 n=2 Tax=Acipenser ruthenus... [more]
A0A4W4H3E9_ELEEL3.290e-737.86DIS3-like exonuclease 1 n=5 Tax=Electrophorus elec... [more]
A0A2D4BNP4_PYTIN3.350e-737.96DIS3-like exonuclease 1 n=1 Tax=Pythium insidiosum... [more]
A0A553PWJ3_9TELE4.470e-737.61DIS3-like exonuclease 1 n=1 Tax=Danionella translu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:174496..175525 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.0
Seed ortholog evalue1.9e-16
Seed eggNOG ortholog2880.D8LN43
Preferred nameDIS3L
KEGG koko:K12585,ko:K18681
KEGG Pathwayko03018,map03018
KEGG ModuleM00391
GOsGO:0000175,GO:0000177,GO:0000178,GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0005886,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008408,GO:0009056,GO:0009057,GO:0009987,GO:0010467,GO:0015630,GO:0016020,GO:0016070,GO:0016072,GO:0016075,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0019439,GO:0019899,GO:0022613,GO:0032991,GO:0034470,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0042254,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046700,GO:0071704,GO:0071840,GO:0071944,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0140098,GO:1901360,GO:1901361,GO:1901575,GO:1902494,GO:1905354
EggNOG free text desc.3'-5'-exoribonuclease activity
EggNOG OGsCOG0557@1,KOG2102@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03019
Hectar predicted targeting categorymitochondrion
Exons2
Model size344
Cds size342
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817375.1575587-CDS-S-ischiensis_contig9:174495..1746731622817375.1575587-CDS-S-ischiensis_contig9:174495..174673Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 174496..174673 +
1695741065.504107-CDS-S-ischiensis_contig9:174495..1746731695741065.504107-CDS-S-ischiensis_contig9:174495..174673Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 174496..174673 +
1622817375.1720746-CDS-S-ischiensis_contig9:175359..1755231622817375.1720746-CDS-S-ischiensis_contig9:175359..175523Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 175360..175523 +
1695741065.5165663-CDS-S-ischiensis_contig9:175359..1755231695741065.5165663-CDS-S-ischiensis_contig9:175359..175523Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 175360..175523 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20390.1prot_S-ischiensis_contig9.20390.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 174496..175523 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20390.1

>prot_S-ischiensis_contig9.20390.1 ID=prot_S-ischiensis_contig9.20390.1|Name=mRNA_S-ischiensis_contig9.20390.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=114bp
VLVSGLSGLNRAMHQDSVALRLLPRHRWCPPMGRRRLVHAPEAGNLDPGE
QVAGDGGQPGDNGQDGEGRHRQEPPPGAVPTGVVVGVLERKWRPFVATIP
PEEAQDRGLDTAGG
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mRNA from alignment at S-ischiensis_contig9:174496..175525+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20390.1 ID=mRNA_S-ischiensis_contig9.20390.1|Name=mRNA_S-ischiensis_contig9.20390.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1030bp|location=Sequence derived from alignment at S-ischiensis_contig9:174496..175525+ (Schizocladia ischiensis KU_0333)
GTGCTTGTCTCCGGGCTCTCCGGGCTGAACCGGGCCATGCACCAAGACTC
GGTGGCCCTGCGGCTGCTGCCCAGACACCGGTGGTGTCCCCCCATGGGCA
GAAGGCGTTTGGTGCACGCACCCGAAGCCGGCAATTTGGACCCCGGGGAG
CAAGTGGCGGGAGACGGGGGGCAGCCAGGTGTGTGTGTGTTGTGTGTGTT
TGTGTGTTTGTGTGTTTTGTGTGTGTGTGTGTGTGCGTGTTTGTGTTGTT
GCGTGTGTTTGTGTGGGCGTGTGTGTGTGTTTGTGTTTGTGCGTGTGTGT
GTTTGTTTGCATGTGTGTGTGTTTGTGTGTGTGTTTCTCTGTTTGTGTGT
GTGTGTGCGTGTGTGTGTGTTCGTGTTGGTGTTGGTGTTGGTGGCTTCCC
TTCCCTGCCCCCCCCCACACCGTATCGGTCCCATCCATGCCCTCCCTTTC
CACACACACCCCCTTCCCCCCCTCCCTCCCTCCCTATCCCCCCCCGCCCC
TTCCCCTCCCCTCCGCTCCCCTCCTTTTCCTTCCCTTCCCATGCCTTCCT
CCCCCCCTTTCCACCTCCCCCCCCCCCCCCCTCCCTCCCTCCCTATCCCC
CCCGCCCCCTCCCCTCTCCTCCCCTCCCCTCCTCTTCCTTCCGTTCCCTC
CCCCAGTGATGGAATATCAAACAGTAGATAGTCATCGGGCTCGACTGATT
TTATGGGTGGTGCTACTAACTTCTTCGAAGTACTTGGATTTGGTGTGGGT
CAAACTATCAAATATCGACTATTGAGAGATACATACATCAGTACTGTCGA
TAAATAGGTTGATTTGCTTAGATATTAGATATTCCATCGCTGCCCTTCCC
ATGCCTTCCTCCAGGGGACAACGGGCAGGATGGAGAAGGGCGACACCGGC
AAGAACCCCCACCGGGAGCTGTCCCGACAGGCGTTGTGGTGGGTGTCCTG
GAACGGAAGTGGAGGCCATTTGTGGCCACCATCCCGCCGGAGGAGGCTCA
GGACCGCGGGCTCGACACAGCGGGCGGAGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:174496..175525+

>mRNA_S-ischiensis_contig9.20390.1 ID=mRNA_S-ischiensis_contig9.20390.1|Name=mRNA_S-ischiensis_contig9.20390.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=684bp|location=Sequence derived from alignment at S-ischiensis_contig9:174496..175525+ (Schizocladia ischiensis KU_0333)
GTGCTTGTCTCCGGGCTCTCCGGGCTGAACCGGGCCATGCACCAAGACTC
GGTGGCCCTGCGGCTGCTGCCCAGACACCGGTGGTGTCCCCCCATGGGCA
GAAGGCGTTTGGTGCACGCACCCGAAGCCGGCAATTTGGACCCCGGGGAG
CAAGTGGCGGGAGACGGGGGGCAGCCAGGTGCTTGTCTCCGGGCTCTCCG
GGCTGAACCGGGCCATGCACCAAGACTCGGTGGCCCTGCGGCTGCTGCCC
AGACACCGGTGGTGTCCCCCCATGGGCAGAAGGCGTTTGGTGCACGCACC
CGAAGCCGGCAATTTGGACCCCGGGGAGCAAGTGGCGGGAGACGGGGGGC
AGCCAGGGGACAACGGGCAGGATGGAGAAGGGCGACACCGGCAAGAACCC
CCACCGGGAGCTGTCCCGACAGGCGTTGTGGTGGGTGTCCTGGAACGGAA
GTGGAGGCCATTTGTGGCCACCATCCCGCCGGAGGAGGCTCAGGACCGCG
GGCTCGACACAGCGGGCGGAGGGACAACGGGCAGGATGGAGAAGGGCGAC
ACCGGCAAGAACCCCCACCGGGAGCTGTCCCGACAGGCGTTGTGGTGGGT
GTCCTGGAACGGAAGTGGAGGCCATTTGTGGCCACCATCCCGCCGGAGGA
GGCTCAGGACCGCGGGCTCGACACAGCGGGCGGA
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