mRNA_S-ischiensis_contig9.20386.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20386.1
Unique NamemRNA_S-ischiensis_contig9.20386.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20386.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:85018..89715 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size1305
Cds size1128
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20386.1prot_S-ischiensis_contig9.20386.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 85023..89543 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817362.6198437-UTR-S-ischiensis_contig9:85017..850221622817362.6198437-UTR-S-ischiensis_contig9:85017..85022Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 85018..85022 +
1695741057.688916-UTR-S-ischiensis_contig9:85017..850221695741057.688916-UTR-S-ischiensis_contig9:85017..85022Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 85018..85022 +
1622817362.6980717-UTR-S-ischiensis_contig9:89543..897151622817362.6980717-UTR-S-ischiensis_contig9:89543..89715Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 89544..89715 +
1695741057.8192017-UTR-S-ischiensis_contig9:89543..897151695741057.8192017-UTR-S-ischiensis_contig9:89543..89715Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 89544..89715 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817362.6310627-CDS-S-ischiensis_contig9:85022..850821622817362.6310627-CDS-S-ischiensis_contig9:85022..85082Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 85023..85082 +
1695741057.702934-CDS-S-ischiensis_contig9:85022..850821695741057.702934-CDS-S-ischiensis_contig9:85022..85082Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 85023..85082 +
1622817362.6421719-CDS-S-ischiensis_contig9:85774..859611622817362.6421719-CDS-S-ischiensis_contig9:85774..85961Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 85775..85961 +
1695741057.764076-CDS-S-ischiensis_contig9:85774..859611695741057.764076-CDS-S-ischiensis_contig9:85774..85961Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 85775..85961 +
1622817362.6529758-CDS-S-ischiensis_contig9:86284..864451622817362.6529758-CDS-S-ischiensis_contig9:86284..86445Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 86285..86445 +
1695741057.7750556-CDS-S-ischiensis_contig9:86284..864451695741057.7750556-CDS-S-ischiensis_contig9:86284..86445Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 86285..86445 +
1622817362.664741-CDS-S-ischiensis_contig9:87028..872471622817362.664741-CDS-S-ischiensis_contig9:87028..87247Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 87029..87247 +
1695741057.7859924-CDS-S-ischiensis_contig9:87028..872471695741057.7859924-CDS-S-ischiensis_contig9:87028..87247Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 87029..87247 +
1622817362.6753078-CDS-S-ischiensis_contig9:87869..881791622817362.6753078-CDS-S-ischiensis_contig9:87869..88179Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 87870..88179 +
1695741057.7977867-CDS-S-ischiensis_contig9:87869..881791695741057.7977867-CDS-S-ischiensis_contig9:87869..88179Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 87870..88179 +
1622817362.6873894-CDS-S-ischiensis_contig9:89352..895431622817362.6873894-CDS-S-ischiensis_contig9:89352..89543Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 89353..89543 +
1695741057.8091438-CDS-S-ischiensis_contig9:89352..895431695741057.8091438-CDS-S-ischiensis_contig9:89352..89543Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 89353..89543 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20386.1

>prot_S-ischiensis_contig9.20386.1 ID=prot_S-ischiensis_contig9.20386.1|Name=mRNA_S-ischiensis_contig9.20386.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=376bp
MVSEVPLADKTLRTALQVAEERGHTATASLLRKLLGGEMPEPEQPATPSR
PGASGGGEQGERVGEAGVTAPATPETATTGGAAGHGEGGGGLGSYSGEGQ
PPRSPGGGAFLAQAATEGSPAGVGSRTSLSPGPGAEAAAALSVTEAHLAA
LALAREREHTAAAAGMERQLQQAGVSPARVRASPNKSGGQGSGSPLPPRA
SGSSAALRQALAEGNNPPGSSGNLASSGGGSSGASASARAAQLKMKLKSG
GSGLKAALSQRVMSAEQLLSKADKLVAGVVTKSGGGGSRPSSPVGSPRGR
GRGSAAGSPRTPGSPRGLSPRMSASPADYGKLSTGTTIAPQVPPQVPSPH
ASGHGSGQGSPQLPPPPPPDGASNV*
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mRNA from alignment at S-ischiensis_contig9:85018..89715+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20386.1 ID=mRNA_S-ischiensis_contig9.20386.1|Name=mRNA_S-ischiensis_contig9.20386.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4698bp|location=Sequence derived from alignment at S-ischiensis_contig9:85018..89715+ (Schizocladia ischiensis KU_0333)
GGAGGATGGTGTCGGAGGTGCCTCTGGCTGACAAGACCTTGAGGACGGCA
CTGCAGGTGGCGGAGGTGAGGGGACTATGTAGCTGTAGCATGATGCTGTA
CTGTATTGTACTGTAGGAGACTAATGTAACATTTCACATGATACTGTACT
GTAGGGGGTGAGGAGCGGGAGGAGGATGGTGTCGGAGGTGCCTCTGGCGG
ACAAGACCTTGAGGACGGCACTGCAGCTGGCCGACGTGAGCAGACTGTGT
ACAGGTCACATGATACTGCAGAAGACCACTCGTACATATTGCTATGTCCC
ACGTAAGTACGGCCGTACTTGAACAGTCTTTGGTACAGTAGTGCACTTCC
AAGTACATGTACAAAGTACCCCTTAACGAGTAAAGTAGGTTGGGATTGTT
TACAGTTGTGGCTGGATGAGTAAAGTAGGTTAGCATGGTTTACAGTCGTG
ATTAAATGCGCGTGTCAAACGCCTTCCGGCCATGCGCTCGAGGGCTCAAG
CGCAGCCTGCATGCCCCCATGATGAGTAAAGTAGGTTAGGATGGTTTACA
GTCGTGATTAAATGCGCCTGCCAACCCCTTCCGGCCATGCGCTCGAGGGC
TCAAGCGCAGCCCGCATGCCCCCCCACCCCTGCTTTTACACCTTCCAGGA
GAGGGGCACACAACCACCGCCTCCCTGCTCCGCAAGCGCCTGGGTGGGGC
TAGGGCTAAACCTAAAAACCTAACCCTAAACCCTAACCCTAACCCTAAAC
CTTCCAGGAGAGGGGGCACACGGCGACCGCCTCCCTGCTCCGCAAGCTCC
TGGGCGGGGAAATGCCAGAGCCTGAGCAGCCCGCCACCCCCTCCCGCCCG
GGGGCCAGCGGCGGCGGGGAGCAGGGCGAGAGGGTGGGAGAAGCCGGCGT
GACTGCCCCCGCAACCCCTGAGACGGCCACCACCGGTGGTGCTGGTAGGT
GATGGAATATCTAAGGAAATCAACCTATTTATTGACAGTACTGATCTATA
CTTCGAAGTATAGAGCTATCTATTGATAGTCGATATTCGATAGTTTGACC
CACAGTGAGTCCAAGTAGTTTCTGGCATGAAGATAAAAAGCGAGTGGAAA
AGAGGACGCGTTCCTACTTACTCGAGTTCAGGCCCCCCCATCCCCGGAAG
CCCATCTTTTCACTCGCCTTCACAACTAGTCAAGTAGTTAGTATTTCCAC
CCACAAATCAGTCGAGCCCGATGACTATCTACTGATCGATATTCCATCAC
TGGTGCTCGTGTTGCAGCTGGCCACGGGGAGGGTGGGGGCGGACTGGGCT
CTTATTCGGGGGAGGGTCAGCCCCCCCGGTCCCCCGGTGGGGGGGCGTTT
CTCGCCCAGGCTGCCACGGAGGGGTCGCCGGCGGGTGTGGGATCGCGCAC
GTCGCTGTCGCCGGGGCCTGGCGCTGAGGTGGGTGGGTGCCATTGTGTGC
ATGCATGCGTTGTGCATGCGGCGGGCGGGCATCCCGTAATCATCGGAGAT
ATCTTGCCCCCCCGGGACAATTTTTGGGAGCCAATTTCTCACGGGGTAGG
TTCCGAATTGTCCTGAAATCCCTCGGACTACAGTACTTAATTCCTCCAGG
TCCTGAGGGAATTTTCCTGAGTTTTTCGATGCGAATCCGACCAGTATTCG
GCGAGAAATGCCCTCGTGAAGTTTGGCATGGGAGGGCAAGATATCTCCAA
CAATTACGGTACTTGTGTGCGCGTGCGTTTGCGTGTGTTTGAGTGAGTGA
GATGGTCTTTCGGGTGGTGGGGATGTGCCCATTTGCGCATCACTGTCACT
ACAGAGAGAGAAACAGACTTATGGCAATACCAATCGGACCTGCGCCGTGG
CACCACTGGCACTGCAGGCGGCTGCGGCCCTGTCTGTGACTGAGGCACAC
CTGGCCGATATATATATATATATACACATATATACGAAGTACATATATAT
ACTCGTAGTAGGACATGGCAAAACCAGTCTGACCTGCGCCATGGCACCGC
CGGCACTGCAGGCGGCTGCGGCCCTGTCGGTGACCGAAGCACACCTGGCC
GCGCTGGCTCTGGCCCGGGAACGCGAGCACACCGCGGCGGCCGCCGGGAT
GGAACGGCAGCTGCAACAGGCGGGGGTCTCCCCTGCCCGGGTACGAGCAT
CGCCAAACAAAAGCGGCGGGCAGGGGTCCGGGTCCCCGCTGCCGCCACGG
GCCAGCGGCTCTTCCGCAGCCCTCCGCCAGGTGTGATACTCTGCGAGCAC
AAGTACTTCCTACTGTTGTATCTACTGTACAGTAATGTAGGCACTTGGAG
GTACTACAGTATATATATATATATACCAGCGGCTCTTCCGCAGACCTCCG
CCAGGGGTGATACTCTGCGAGTGCAAACGGAGTATGTGTACTCATGTTGT
GCTTGCCATAGTCCCGAGACCATGGACCACACGCCTCGATCGAGACGGAG
CACTGTACACATACGCCCAAGCATGCAGAATAGCTGGCGATGGCCCAACC
ACAGACTGCAAGCTCTCCCGCCTTGCCCCTCAAGTTCTGTGGTCACCATC
GTGCTCCACCGGCCCACCCTTAGCCACTGATCGAATATCTAAGCAAATCA
AACTATTTATCGACAGTGCTCATCTATTTGAGTGGTAGATACGCAGCGAG
TTCCAGGCTGCCAACAAGGCTCGCCCCAAAACAGGACTCAACGAAGCCCT
TCCTTCCCTCGATCTATACATATATCGATAGTCGATATTCGATAGTTTGA
CCCACACTGAATCCAAGTACTGTAGTTGGCAACGCGACCCACAAAATCAG
TGGAGCCCGATAGCTATCTACTGATTGATATTCCATCACTGCCCCTTGGC
AGGCGCTGGCGGAAGGCAACAACCCGCCTGGCAGCAGCGGCAACTTAGCC
TCATCGGGGGGGGGAAGTTCAGGCGCCTCAGCCTCGGCCAGGGCGGCCCA
ACTGAAGATGAAGCTCAAGTCAGGTGGCAGCGGCCTTAAGGCGGCGCTCT
CCCAGCGGGTCATGAGCGCTGAGCAGCTGCTGAGCAAGGCCGATAAGCTG
GTGGCGGGCGTGGTGACCAAAAGTGGTGGTGGTGGCAGCCGGCCCAGCAG
CCCGGTGGGCAGCCCCCGTGGGCGTGGGAGGGGGAGTGCGGCCGGCAGCC
CGAGAACCCCTGGTGAGTTGGGGTGCGATGTCGAACTATGTACAGTTCAG
TTCTACCTCAAAGACCTCCCTCCTCTTCCTTCCCCTCACCTTCCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTGCTCCTCCCCGGCCAC
CTCCCCTTCCCCACACAAAGTTCCCTGGCGAGCTATAAGGAAGGGCCACT
GCTGAGGTCTCTAGTGACGTGGCCCGCACTCGCCCCGTGTTGTTCCTGTT
AGTACAGTTCAGTTCTACTTCCAAAGTACTACTGTGCTACAGGACTAGGA
GCTCGCACAGAAAGTTGGTACGGCTGCACAAAGTATAGAACAGTTCCTGC
CCGCTGCCTACGAGCAAGATGTAGGTTAGGTCGCTCATTGATCCCGAGTC
ATGCTACCATTGGGGGGGAGGTATATTGTTGCACCGGTTCTTCAGCCGGG
CCCATGCACGAAAGTGGCATTATCTCACCCCCAACAATGAGATGAGTGTC
CGTGAATTGCTGCCCTGTAACCTTGCAGAGAGGGGCTTCCCATGTGATTG
TTTTTGGAGACTGCCGGAGAGTGGAAGTCTTCCAAACAGGGCTTCCAATA
TTACAGCAGGAGGGCTGTTTGACCGAACACCCCTGCAACAAAGGGGCTCA
TATTGCCCCCCCCCAATCGTGCAGGAGTCTCGGGACCCATGTCTTGTAGT
GTACTGTAGGTACATGCTGTGCACTACACTAGTACTAGAGTCCAGTAGTA
CTCTACTCTCACTTGCTGCACTGTACTTGCCGAGTACTACCAGTACCTCG
TAGTATGTACCGCACTGTAGTGTAACTTTGTACTGTAGTGTGCCACTGGG
CTTGAGACCGATATCCTTTCAAGACCTCTTCGCTCACCTTGTTCCATTCC
TCTACTGCACATAGACCCTCCAGCCCCCTTGCTGGTCTGAGGGTCACTTC
CGCGTCACTCGGGTGACTACTTTGACATTGACAAGTACGGCCACCTCCAA
ACTGACCCCAGTCTCCGGGCCCGGACACACAGTCTCTTGACCTCCCTCCC
TCCCTCCCTCTCCCTCTCCCTCTCCCCCCGCGCCTCCCTCCCTCCCTCCC
CTCCACCCCCCTCCTGTACCCTTGGCGCCTCCCTCCCCTCCACCCCCTCA
CTGTTcccccccCCCCCCTGTAACCTTGGCGACAGGGTCTCCGCGGGGCC
TGAGCCCGCGCATGTCAGCCTCCCCCGCAGATTACGGAAAACTTTCCACA
GGCACAACGATAGCGCCGCAAGTACCTCCACAGGTACCTTCCCCTCATGC
CAGTGGACATGGCAGTGGGCAGGGCAGCCCACAGCTGCCACCGCCGCCGC
CACCGGACGGTGCCAGTAATGTGTGACAGTTGCCCGGACGGTGACAATGA
TGTGTAGATAGAGAGATTTCTGGGGTCTCAATTCATAAGTTGCGCACTTC
ACGAGGGGATTCGGGCTTCCGCGCAAATCGCCCTAGATCCGCCGCATCCG
CGGGTATGCCCGAGGGAAAATGGTGCCGGCATCCGTGGAGATGCCCCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:85018..89715+

>mRNA_S-ischiensis_contig9.20386.1 ID=mRNA_S-ischiensis_contig9.20386.1|Name=mRNA_S-ischiensis_contig9.20386.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2256bp|location=Sequence derived from alignment at S-ischiensis_contig9:85018..89715+ (Schizocladia ischiensis KU_0333)
ATGGTGTCGGAGGTGCCTCTGGCTGACAAGACCTTGAGGACGGCACTGCA
GGTGGCGGAGATGGTGTCGGAGGTGCCTCTGGCTGACAAGACCTTGAGGA
CGGCACTGCAGGTGGCGGAGGAGAGGGGGCACACGGCGACCGCCTCCCTG
CTCCGCAAGCTCCTGGGCGGGGAAATGCCAGAGCCTGAGCAGCCCGCCAC
CCCCTCCCGCCCGGGGGCCAGCGGCGGCGGGGAGCAGGGCGAGAGGGTGG
GAGAAGCCGGCGTGACTGCCCCCGCAACCCCTGAGACGGCCACCACCGGT
GGTGCTGGAGAGGGGGCACACGGCGACCGCCTCCCTGCTCCGCAAGCTCC
TGGGCGGGGAAATGCCAGAGCCTGAGCAGCCCGCCACCCCCTCCCGCCCG
GGGGCCAGCGGCGGCGGGGAGCAGGGCGAGAGGGTGGGAGAAGCCGGCGT
GACTGCCCCCGCAACCCCTGAGACGGCCACCACCGGTGGTGCTGCTGGCC
ACGGGGAGGGTGGGGGCGGACTGGGCTCTTATTCGGGGGAGGGTCAGCCC
CCCCGGTCCCCCGGTGGGGGGGCGTTTCTCGCCCAGGCTGCCACGGAGGG
GTCGCCGGCGGGTGTGGGATCGCGCACGTCGCTGTCGCCGGGGCCTGGCG
CTGAGCTGGCCACGGGGAGGGTGGGGGCGGACTGGGCTCTTATTCGGGGG
AGGGTCAGCCCCCCCGGTCCCCCGGTGGGGGGGCGTTTCTCGCCCAGGCT
GCCACGGAGGGGTCGCCGGCGGGTGTGGGATCGCGCACGTCGCTGTCGCC
GGGGCCTGGCGCTGAGGCGGCTGCGGCCCTGTCGGTGACCGAAGCACACC
TGGCCGCGCTGGCTCTGGCCCGGGAACGCGAGCACACCGCGGCGGCCGCC
GGGATGGAACGGCAGCTGCAACAGGCGGGGGTCTCCCCTGCCCGGGTACG
AGCATCGCCAAACAAAAGCGGCGGGCAGGGGTCCGGGTCCCCGCTGCCGC
CACGGGCCAGCGGCTCTTCCGCAGCCCTCCGCCAGGCGGCTGCGGCCCTG
TCGGTGACCGAAGCACACCTGGCCGCGCTGGCTCTGGCCCGGGAACGCGA
GCACACCGCGGCGGCCGCCGGGATGGAACGGCAGCTGCAACAGGCGGGGG
TCTCCCCTGCCCGGGTACGAGCATCGCCAAACAAAAGCGGCGGGCAGGGG
TCCGGGTCCCCGCTGCCGCCACGGGCCAGCGGCTCTTCCGCAGCCCTCCG
CCAGGCGCTGGCGGAAGGCAACAACCCGCCTGGCAGCAGCGGCAACTTAG
CCTCATCGGGGGGGGGAAGTTCAGGCGCCTCAGCCTCGGCCAGGGCGGCC
CAACTGAAGATGAAGCTCAAGTCAGGTGGCAGCGGCCTTAAGGCGGCGCT
CTCCCAGCGGGTCATGAGCGCTGAGCAGCTGCTGAGCAAGGCCGATAAGC
TGGTGGCGGGCGTGGTGACCAAAAGTGGTGGTGGTGGCAGCCGGCCCAGC
AGCCCGGTGGGCAGCCCCCGTGGGCGTGGGAGGGGGAGTGCGGCCGGCAG
CCCGAGAACCCCTGGCGCTGGCGGAAGGCAACAACCCGCCTGGCAGCAGC
GGCAACTTAGCCTCATCGGGGGGGGGAAGTTCAGGCGCCTCAGCCTCGGC
CAGGGCGGCCCAACTGAAGATGAAGCTCAAGTCAGGTGGCAGCGGCCTTA
AGGCGGCGCTCTCCCAGCGGGTCATGAGCGCTGAGCAGCTGCTGAGCAAG
GCCGATAAGCTGGTGGCGGGCGTGGTGACCAAAAGTGGTGGTGGTGGCAG
CCGGCCCAGCAGCCCGGTGGGCAGCCCCCGTGGGCGTGGGAGGGGGAGTG
CGGCCGGCAGCCCGAGAACCCCTGGGTCTCCGCGGGGCCTGAGCCCGCGC
ATGTCAGCCTCCCCCGCAGATTACGGAAAACTTTCCACAGGCACAACGAT
AGCGCCGCAAGTACCTCCACAGGTACCTTCCCCTCATGCCAGTGGACATG
GCAGTGGGCAGGGCAGCCCACAGCTGCCACCGCCGCCGCCACCGGACGGT
GCCAGTAATGTGTGAGGTCTCCGCGGGGCCTGAGCCCGCGCATGTCAGCC
TCCCCCGCAGATTACGGAAAACTTTCCACAGGCACAACGATAGCGCCGCA
AGTACCTCCACAGGTACCTTCCCCTCATGCCAGTGGACATGGCAGTGGGC
AGGGCAGCCCACAGCTGCCACCGCCGCCGCCACCGGACGGTGCCAGTAAT
GTGTGA
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