mRNA_S-ischiensis_contig9.20381.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20381.1
Unique NamemRNA_S-ischiensis_contig9.20381.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig9.20381.1 vs. uniprot
Match: A0A6H5KZ72_9PHAE (DOT1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ72_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 2.160e-21
Identity = 48/106 (45.28%), Postives = 74/106 (69.81%), Query Frame = 1 
Query:  172 LSKYEVFAYMKKLHKHLGEDIVASDDMKKEREDALEVMGRVYVDMSAAGVRAISQENRIRDRLGHDSLVYGEIDNESLLKVLQKLRRVHGHMIQAGGSFWDLGAGV 489
            LSKYEVF++M+++H   G  I+ +++  ++  +A +++  +Y  +    V+ ISQ+NRI   L  DS+ YGEID    LKV+ KL+R+HG+M+ AGGSFWDLG+GV
Sbjct:  195 LSKYEVFSFMRRVHDRAGAAIIETEEAVEDMREAKKMVDMLYEHLPVQTVKEISQQNRINANLMQDSVAYGEIDISHFLKVMVKLKRIHGNMMSAGGSFWDLGSGV 300
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BLAST of mRNA_S-ischiensis_contig9.20381.1 vs. uniprot
Match: D8LQJ9_ECTSI (DOT1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQJ9_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 9.100e-20
Identity = 45/106 (42.45%), Postives = 73/106 (68.87%), Query Frame = 1 
Query:  172 LSKYEVFAYMKKLHKHLGEDIVASDDMKKEREDALEVMGRVYVDMSAAGVRAISQENRIRDRLGHDSLVYGEIDNESLLKVLQKLRRVHGHMIQAGGSFWDLGAGV 489
            LSKYEVF++M+++H   G  ++++++  ++   A +++  +Y  +    ++ ISQ+NRI   L  DS+ YGEID    LKV+ KL+R+HG+M+  GGSFWDLG+GV
Sbjct:  219 LSKYEVFSFMRRVHDRAGAAMISTEEAVEDMRKAKKMVDTLYEHLPVQTLKEISQQNRINASLMQDSVAYGEIDISHFLKVMVKLKRIHGNMMSVGGSFWDLGSGV 324
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20381.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KZ72_9PHAE2.160e-2145.28DOT1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LQJ9_ECTSI9.100e-2042.45DOT1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:27031..28173 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.8
Seed ortholog evalue2.6e-19
Seed eggNOG ortholog2880.D8LQJ9
EggNOG free text desc.Histone methylation protein DOT1
EggNOG OGs2BR00@1,2STQA@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size830
Cds size828
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817362.526801-CDS-S-ischiensis_contig9:27030..274411622817362.526801-CDS-S-ischiensis_contig9:27030..27441Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 27031..27441 +
1695741057.5911217-CDS-S-ischiensis_contig9:27030..274411695741057.5911217-CDS-S-ischiensis_contig9:27030..27441Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 27031..27441 +
1622817362.5376365-CDS-S-ischiensis_contig9:27756..281731622817362.5376365-CDS-S-ischiensis_contig9:27756..28173Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 27757..28173 +
1695741057.6058822-CDS-S-ischiensis_contig9:27756..281731695741057.6058822-CDS-S-ischiensis_contig9:27756..28173Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 27757..28173 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20381.1prot_S-ischiensis_contig9.20381.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 27031..28173 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20381.1

>prot_S-ischiensis_contig9.20381.1 ID=prot_S-ischiensis_contig9.20381.1|Name=mRNA_S-ischiensis_contig9.20381.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=276bp
EDLPIDKAIDKKRKGAKSKVQGESDTEPETDDSDEDSQASEAEAEEEEAP
GQEPFVPLSKYEVFAYMKKLHKHLGEDIVASDDMKKEREDALEVMGRVYV
DMSAAGVRAISQENRIRDRLGHDSLVYGEIDNESLLKVLQKLRRVHGHMI
QAGGSFWDLGAGVVSVGRQRLPPDLLSTLCSYEMRDYVVYSTHTGSTELE
VCTSKYCSAWTALVLYLALFPLQNWTCTLNPTIIRTPVVKGITSLARPTR
CRQPMHEIVHYSSTALTVVVSQCMC*
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mRNA from alignment at S-ischiensis_contig9:27031..28173+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20381.1 ID=mRNA_S-ischiensis_contig9.20381.1|Name=mRNA_S-ischiensis_contig9.20381.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1143bp|location=Sequence derived from alignment at S-ischiensis_contig9:27031..28173+ (Schizocladia ischiensis KU_0333)
GAAGACCTGCCCATCGACAAAGCCATCGACAAAAAAAGAAAGGGTGCTAA
GAGCAAGGTCCAGGGGGAGTCAGACACAGAGCCTGAGACAGACGATAGCG
ACGAAGATTCTCAAGCTTCCGAGGCAGAAGCAGAGGAGGAGGAGGCGCCC
GGCCAGGAACCATTTGTGCCCCTTAGCAAGTACGAAGTATTTGCGTACAT
GAAGAAGCTGCACAAACACCTGGGAGAGGACATAGTTGCTTCCGACGACA
TGAAGAAGGAGAGGGAGGACGCTCTGGAGGTGATGGGTCGCGTGTACGTG
GACATGTCCGCGGCAGGGGTCCGGGCCATATCGCAGGAGAACCGCATTCG
GGACAGGCTGGGCCACGATTCCCTCGTGTACGGCGAAATCGACAACGAGT
CCTTGCTAAAGGTGTGTTTGTATTTCTCCGCATTTGTACGTGTTTGTTCA
TGTGGGTGCATGCATGTGTATGTCGTATGTCTGTGCCCACGCGTGCAAGT
GCAGGCACGTGTGTGTGTTCTTTCGCGTGAGCGTGGGTGTGTAATGATTG
AAGGGAATAAGCAATCCACGTGGAGGGCAAAGCCTCATCATGTGTGGCAT
TGTGCTTACTGCAGTGTTCACTGTCATCAACTGTATGCACATATCTACGT
GAGCATTTTTTTCCGCACCTGCCCGCCTTGCTACTTGCCCTCCCTCCCCT
TGCCACACACCCCCCCGGGGGAGCAGGTTCTCCAGAAGCTAAGACGCGTG
CACGGGCACATGATCCAGGCTGGGGGCAGTTTTTGGGACCTTGGGGCAGG
CGTGGTGAGTGTGGGTCGCCAAAGATTGCCGCCTGATCTCTTATCCACCC
TATGCAGTTATGAAATGCGTGACTATGTAGTGTACAGCACACACACAGGC
AGTACGGAGTTGGAAGTATGTACTTCGAAGTACTGCAGCGCATGGACAGC
ACTCGTACTTTACTTGGCCCTTTTCCCCCTGCAAAATTGGACTTGCACGC
TAAACCCTACCATTATACGGACCCCAGTGGTAAAAGGAATAACAAGCCTC
GCTCGGCCTACCAGGTGTCGTCAGCCAATGCATGAAATAGTACACTACTC
GAGTACAGCACTTACTGTAGTCGTCAGCCAATGCATGTGCTAA
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:27031..28173+

>mRNA_S-ischiensis_contig9.20381.1 ID=mRNA_S-ischiensis_contig9.20381.1|Name=mRNA_S-ischiensis_contig9.20381.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1656bp|location=Sequence derived from alignment at S-ischiensis_contig9:27031..28173+ (Schizocladia ischiensis KU_0333)
GAAGACCTGCCCATCGACAAAGCCATCGACAAAAAAAGAAAGGGTGCTAA
GAGCAAGGTCCAGGGGGAGTCAGACACAGAGCCTGAGACAGACGATAGCG
ACGAAGATTCTCAAGCTTCCGAGGCAGAAGCAGAGGAGGAGGAGGCGCCC
GGCCAGGAACCATTTGTGCCCCTTAGCAAGTACGAAGTATTTGCGTACAT
GAAGAAGCTGCACAAACACCTGGGAGAGGACATAGTTGCTTCCGACGACA
TGAAGAAGGAGAGGGAGGACGCTCTGGAGGTGATGGGTCGCGTGTACGTG
GACATGTCCGCGGCAGGGGTCCGGGCCATATCGCAGGAGAACCGCATTCG
GGACAGGCTGGGCCACGATTCCCTCGTGTACGGCGAAATCGACAACGAGT
CCTTGCTAAAGGAAGACCTGCCCATCGACAAAGCCATCGACAAAAAAAGA
AAGGGTGCTAAGAGCAAGGTCCAGGGGGAGTCAGACACAGAGCCTGAGAC
AGACGATAGCGACGAAGATTCTCAAGCTTCCGAGGCAGAAGCAGAGGAGG
AGGAGGCGCCCGGCCAGGAACCATTTGTGCCCCTTAGCAAGTACGAAGTA
TTTGCGTACATGAAGAAGCTGCACAAACACCTGGGAGAGGACATAGTTGC
TTCCGACGACATGAAGAAGGAGAGGGAGGACGCTCTGGAGGTGATGGGTC
GCGTGTACGTGGACATGTCCGCGGCAGGGGTCCGGGCCATATCGCAGGAG
AACCGCATTCGGGACAGGCTGGGCCACGATTCCCTCGTGTACGGCGAAAT
CGACAACGAGTCCTTGCTAAAGGTTCTCCAGAAGCTAAGACGCGTGCACG
GGCACATGATCCAGGCTGGGGGCAGTTTTTGGGACCTTGGGGCAGGCGTG
GTGAGTGTGGGTCGCCAAAGATTGCCGCCTGATCTCTTATCCACCCTATG
CAGTTATGAAATGCGTGACTATGTAGTGTACAGCACACACACAGGCAGTA
CGGAGTTGGAAGTATGTACTTCGAAGTACTGCAGCGCATGGACAGCACTC
GTACTTTACTTGGCCCTTTTCCCCCTGCAAAATTGGACTTGCACGCTAAA
CCCTACCATTATACGGACCCCAGTGGTAAAAGGAATAACAAGCCTCGCTC
GGCCTACCAGGTGTCGTCAGCCAATGCATGAAATAGTACACTACTCGAGT
ACAGCACTTACTGTAGTCGTCAGCCAATGCATGTGCTAAGTTCTCCAGAA
GCTAAGACGCGTGCACGGGCACATGATCCAGGCTGGGGGCAGTTTTTGGG
ACCTTGGGGCAGGCGTGGTGAGTGTGGGTCGCCAAAGATTGCCGCCTGAT
CTCTTATCCACCCTATGCAGTTATGAAATGCGTGACTATGTAGTGTACAG
CACACACACAGGCAGTACGGAGTTGGAAGTATGTACTTCGAAGTACTGCA
GCGCATGGACAGCACTCGTACTTTACTTGGCCCTTTTCCCCCTGCAAAAT
TGGACTTGCACGCTAAACCCTACCATTATACGGACCCCAGTGGTAAAAGG
AATAACAAGCCTCGCTCGGCCTACCAGGTGTCGTCAGCCAATGCATGAAA
TAGTACACTACTCGAGTACAGCACTTACTGTAGTCGTCAGCCAATGCATG
TGCTAA
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