mRNA_S-ischiensis_contig9.20377.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20377.1
Unique NamemRNA_S-ischiensis_contig9.20377.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20377.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:15611..16562 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size532
Cds size531
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20377.1prot_S-ischiensis_contig9.20377.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 15611..16562 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817362.4747238-CDS-S-ischiensis_contig9:15610..158171622817362.4747238-CDS-S-ischiensis_contig9:15610..15817Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 15611..15817 -
1695741057.5374136-CDS-S-ischiensis_contig9:15610..158171695741057.5374136-CDS-S-ischiensis_contig9:15610..15817Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 15611..15817 -
1622817362.4871016-CDS-S-ischiensis_contig9:15975..162421622817362.4871016-CDS-S-ischiensis_contig9:15975..16242Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 15976..16242 -
1695741057.5613692-CDS-S-ischiensis_contig9:15975..162421695741057.5613692-CDS-S-ischiensis_contig9:15975..16242Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 15976..16242 -
1622817362.497895-CDS-S-ischiensis_contig9:16505..165621622817362.497895-CDS-S-ischiensis_contig9:16505..16562Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 16506..16562 -
1695741057.580128-CDS-S-ischiensis_contig9:16505..165621695741057.580128-CDS-S-ischiensis_contig9:16505..16562Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 16506..16562 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20377.1

>prot_S-ischiensis_contig9.20377.1 ID=prot_S-ischiensis_contig9.20377.1|Name=mRNA_S-ischiensis_contig9.20377.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=177bp
RREGGGAGVDGARGRGELQAVDGVGVLKLKPAAAILPALNPATPAASAKR
RLLETDIMGGTLAFPKDSKRRRLAAAQASGGGSGHFIPRERPEDVLDPST
SHLPRASQVFETFMRAHLGPPTATPAIQAARPLGSGPAAPRTRGQGTSGA
SSAEGGTTRCRGLGGSASGKFGAARAP
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mRNA from alignment at S-ischiensis_contig9:15611..16562-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20377.1 ID=mRNA_S-ischiensis_contig9.20377.1|Name=mRNA_S-ischiensis_contig9.20377.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=952bp|location=Sequence derived from alignment at S-ischiensis_contig9:15611..16562- (Schizocladia ischiensis KU_0333)
CGCCGCGAGGGCGGGGGAGCGGGAGTGGACGGGGCGCGGGGTAGGGGCGA
GCTGCAGGTGAGGAGCGAGGGGATGTACGAAGTACTCTGAACGAAGCAGT
GTAAGGTGGATAAATACGGATGCACATATATACTCTGCCTGTTGCTGCTT
GACACGCGCACCTTTTGGGTGCGGTCCCGGGGCCGTCCGTCCCTCGGGCA
ATCCATCCACGCAACGGCACTTATCGTTCCACCCACCGACCCACTCCTTG
ATGACAGATGTGCACCCACCCACCCACCCACCCACCCACCCCCCACCCTG
TGTTTTCTCCCTCCGCCCAGGCCGTGGACGGCGTGGGCGTCCTAAAACTA
AAACCCGCGGCCGCCATCCTGCCGGCGCTCAACCCGGCCACTCCCGCCGC
AAGCGCCAAGAGGAGGCTCCTGGAGACGGACATCATGGGGGGGACTTTGG
CCTTCCCCAAGGACAGCAAGCGCCGGAGGCTTGCGGCGGCACAGGCTTCG
GGGGGCGGCAGCGGCCACTTTATACCCCGCGAACGCCCAGAAGACGTGCT
GGACCCATCCACCAGCCACCTGCCCCGCGCCTCCCAGGTGCTGATCCATA
TAATAGTAACCATGTACAATCGCACTTGTGTGAGTGAGATTGAGTGATCT
CGTACTAGTAGTTCCCATTTATGAATTGAATGTTCTTATATGAGTGATTA
GCACATCAAGGAACTAAGAACAAGGACCTGCCCCCTGCCTCCCAGGTGTT
TGAAACCTTCATGCGGGCACACCTGGGCCCACCGACTGCGACGCCGGCGA
TTCAAGCCGCGCGGCCGCTGGGCTCAGGGCCGGCAGCACCCCGAACCCGG
GGTCAGGGGACATCCGGCGCATCTTCCGCGGAGGGCGGGACCACCCGGTG
TCGCGGACTAGGGGGCAGTGCCTCGGGCAAGTTCGGGGCGGCGCGGGCTC
CG
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:15611..16562-

>mRNA_S-ischiensis_contig9.20377.1 ID=mRNA_S-ischiensis_contig9.20377.1|Name=mRNA_S-ischiensis_contig9.20377.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1062bp|location=Sequence derived from alignment at S-ischiensis_contig9:15611..16562- (Schizocladia ischiensis KU_0333)
CGCCGCGAGGGCGGGGGAGCGGGAGTGGACGGGGCGCGGGGTAGGGGCGA
GCTGCAGCGCCGCGAGGGCGGGGGAGCGGGAGTGGACGGGGCGCGGGGTA
GGGGCGAGCTGCAGGCCGTGGACGGCGTGGGCGTCCTAAAACTAAAACCC
GCGGCCGCCATCCTGCCGGCGCTCAACCCGGCCACTCCCGCCGCAAGCGC
CAAGAGGAGGCTCCTGGAGACGGACATCATGGGGGGGACTTTGGCCTTCC
CCAAGGACAGCAAGCGCCGGAGGCTTGCGGCGGCACAGGCTTCGGGGGGC
GGCAGCGGCCACTTTATACCCCGCGAACGCCCAGAAGACGTGCTGGACCC
ATCCACCAGCCACCTGCCCCGCGCCTCCCAGGCCGTGGACGGCGTGGGCG
TCCTAAAACTAAAACCCGCGGCCGCCATCCTGCCGGCGCTCAACCCGGCC
ACTCCCGCCGCAAGCGCCAAGAGGAGGCTCCTGGAGACGGACATCATGGG
GGGGACTTTGGCCTTCCCCAAGGACAGCAAGCGCCGGAGGCTTGCGGCGG
CACAGGCTTCGGGGGGCGGCAGCGGCCACTTTATACCCCGCGAACGCCCA
GAAGACGTGCTGGACCCATCCACCAGCCACCTGCCCCGCGCCTCCCAGGT
GTTTGAAACCTTCATGCGGGCACACCTGGGCCCACCGACTGCGACGCCGG
CGATTCAAGCCGCGCGGCCGCTGGGCTCAGGGCCGGCAGCACCCCGAACC
CGGGGTCAGGGGACATCCGGCGCATCTTCCGCGGAGGGCGGGACCACCCG
GTGTCGCGGACTAGGGGGCAGTGCCTCGGGCAAGTTCGGGGCGGCGCGGG
CTCCGGTGTTTGAAACCTTCATGCGGGCACACCTGGGCCCACCGACTGCG
ACGCCGGCGATTCAAGCCGCGCGGCCGCTGGGCTCAGGGCCGGCAGCACC
CCGAACCCGGGGTCAGGGGACATCCGGCGCATCTTCCGCGGAGGGCGGGA
CCACCCGGTGTCGCGGACTAGGGGGCAGTGCCTCGGGCAAGTTCGGGGCG
GCGCGGGCTCCG
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