mRNA_S-ischiensis_contig89.20372.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig89.20372.1
Unique NamemRNA_S-ischiensis_contig89.20372.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig89.20372.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig89contigS-ischiensis_contig89:495013..495680 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size670
Cds size378
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817360.2581773-UTR-S-ischiensis_contig89:495012..4953021622817360.2581773-UTR-S-ischiensis_contig89:495012..495302Schizocladia ischiensis KU_0333UTRS-ischiensis_contig89 495013..495302 +
1695741055.5886319-UTR-S-ischiensis_contig89:495012..4953021695741055.5886319-UTR-S-ischiensis_contig89:495012..495302Schizocladia ischiensis KU_0333UTRS-ischiensis_contig89 495013..495302 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817360.269343-CDS-S-ischiensis_contig89:495302..4956801622817360.269343-CDS-S-ischiensis_contig89:495302..495680Schizocladia ischiensis KU_0333CDSS-ischiensis_contig89 495303..495680 +
1695741055.6043565-CDS-S-ischiensis_contig89:495302..4956801695741055.6043565-CDS-S-ischiensis_contig89:495302..495680Schizocladia ischiensis KU_0333CDSS-ischiensis_contig89 495303..495680 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig89.20372.1prot_S-ischiensis_contig89.20372.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig89 495303..495680 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig89.20372.1

>prot_S-ischiensis_contig89.20372.1 ID=prot_S-ischiensis_contig89.20372.1|Name=mRNA_S-ischiensis_contig89.20372.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=126bp
MLYIQYIQYIYRATATMCTAVQFRRTPLGCQWHSCNTEVRSFASFALHGI
RVLNVMIYSHSYVHRLAETMIGPAKQTTKLRQGFPLQFQGLRLLRPWQAG
HGGLWLRNRSGRKLLLYSYYAVLPEV
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mRNA from alignment at S-ischiensis_contig89:495013..495680+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig89.20372.1 ID=mRNA_S-ischiensis_contig89.20372.1|Name=mRNA_S-ischiensis_contig89.20372.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=668bp|location=Sequence derived from alignment at S-ischiensis_contig89:495013..495680+ (Schizocladia ischiensis KU_0333)
GGCGGAAGAGGCTTGCTGTGCATCATGTGTTGGAGTTGGTGCCATGGGGA
GGGAGGGCGAGGGTGGTGGTGGTGGGGTAATGGTGGCGGTGATGTCGGTC
GCATGCAAGGGAAGGGACGCCAGAAACAAATGGGAAGATGAGGGCACATG
GGAGGGGTGGTTAGGGCATCTCCAGGCTGTGTATGGTCTGGTAATTCTGT
ACTGTAGTACTTGAAGCTTGACACTGATTTAACCCCGCCTGGCTTGCCAG
AGTGGTATCCGAGTCACTGCAGTACTTCCCAAGTACTTCCATGTTGTACA
TACAGTACATACAGTACATATACAGGGCTACGGCAACTATGTGTACAGCA
GTACAGTTCAGGCGCACTCCGCTGGGGTGCCAGTGGCACAGCTGCAATAC
AGAAGTACGATCTTTCGCATCGTTTGCACTTCATGGCATTCGTGTCTTAA
ACGTGATGATATATAGCCACTCATACGTACATAGGCTAGCGGAAACCATG
ATAGGGCCAGCGAAACAGACCACCAAACTAAGGCAGGGGTTTCCTCTCCA
GTTTCAAGGGCTCCGTCTGCTCAGGCCCTGGCAGGCGGGGCATGGGGGGC
TGTGGTTGCGGAATCGCAGCGGGAGAAAACTACTACTGTACTCGTACTAC
GCAGTACTTCCGGAAGTA
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Coding sequence (CDS) from alignment at S-ischiensis_contig89:495013..495680+

>mRNA_S-ischiensis_contig89.20372.1 ID=mRNA_S-ischiensis_contig89.20372.1|Name=mRNA_S-ischiensis_contig89.20372.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=756bp|location=Sequence derived from alignment at S-ischiensis_contig89:495013..495680+ (Schizocladia ischiensis KU_0333)
ATGTTGTACATACAGTACATACAGTACATATACAGGGCTACGGCAACTAT
GTGTACAGCAGTACAGTTCAGGCGCACTCCGCTGGGGTGCCAGTGGCACA
GCTGCAATACAGAAGTACGATCTTTCGCATCGTTTGCACTTCATGGCATT
CGTGTCTTAAACGTGATGATATATAGCCACTCATACGTACATAGGCTAGC
GGAAACCATGATAGGGCCAGCGAAACAGACCACCAAACTAAGGCAGGGGT
TTCCTCTCCAGTTTCAAGGGCTCCGTCTGCTCAGGCCCTGGCAGGCGGGG
CATGGGGGGCTGTGGTTGCGGAATCGCAGCGGGAGAAAACTACTACTGTA
CTCGTACTACGCAGTACTTCCGGAAGTAATGTTGTACATACAGTACATAC
AGTACATATACAGGGCTACGGCAACTATGTGTACAGCAGTACAGTTCAGG
CGCACTCCGCTGGGGTGCCAGTGGCACAGCTGCAATACAGAAGTACGATC
TTTCGCATCGTTTGCACTTCATGGCATTCGTGTCTTAAACGTGATGATAT
ATAGCCACTCATACGTACATAGGCTAGCGGAAACCATGATAGGGCCAGCG
AAACAGACCACCAAACTAAGGCAGGGGTTTCCTCTCCAGTTTCAAGGGCT
CCGTCTGCTCAGGCCCTGGCAGGCGGGGCATGGGGGGCTGTGGTTGCGGA
ATCGCAGCGGGAGAAAACTACTACTGTACTCGTACTACGCAGTACTTCCG
GAAGTA
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