mRNA_S-ischiensis_contig89.20368.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig89.20368.1
Unique NamemRNA_S-ischiensis_contig89.20368.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig89.20368.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig89contigS-ischiensis_contig89:454986..455404 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size421
Cds size381
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817360.2131176-CDS-S-ischiensis_contig89:454985..4553661622817360.2131176-CDS-S-ischiensis_contig89:454985..455366Schizocladia ischiensis KU_0333CDSS-ischiensis_contig89 454986..455366 +
1695741055.5510623-CDS-S-ischiensis_contig89:454985..4553661695741055.5510623-CDS-S-ischiensis_contig89:454985..455366Schizocladia ischiensis KU_0333CDSS-ischiensis_contig89 454986..455366 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817360.2250223-UTR-S-ischiensis_contig89:455366..4554041622817360.2250223-UTR-S-ischiensis_contig89:455366..455404Schizocladia ischiensis KU_0333UTRS-ischiensis_contig89 455367..455404 +
1695741055.5687382-UTR-S-ischiensis_contig89:455366..4554041695741055.5687382-UTR-S-ischiensis_contig89:455366..455404Schizocladia ischiensis KU_0333UTRS-ischiensis_contig89 455367..455404 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig89.20368.1prot_S-ischiensis_contig89.20368.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig89 454986..455366 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig89.20368.1

>prot_S-ischiensis_contig89.20368.1 ID=prot_S-ischiensis_contig89.20368.1|Name=mRNA_S-ischiensis_contig89.20368.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=127bp
SYSSFLSHNTKRHSIVDQSTWCCDGISGFDRFAGLWRFSRAWPVPPGLAM
VGACCAMLCMQSDPDDLYYCGICTTSKYNIYAYSHIYMYSRCACRSPDTI
DHAPRSRRSRITAGNALLHRCCWRGH*
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mRNA from alignment at S-ischiensis_contig89:454986..455404+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig89.20368.1 ID=mRNA_S-ischiensis_contig89.20368.1|Name=mRNA_S-ischiensis_contig89.20368.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=419bp|location=Sequence derived from alignment at S-ischiensis_contig89:454986..455404+ (Schizocladia ischiensis KU_0333)
TCATACTCCTCTTTTCTATCCCACAATACAAAGAGGCATTCCATAGTTGA
TCAAAGTACTTGGTGCTGTGATGGTATTTCAGGCTTTGACAGATTCGCCG
GGCTTTGGCGGTTTTCCCGAGCTTGGCCGGTTCCGCCAGGTTTGGCCATG
GTGGGGGCCTGCTGTGCCATGCTATGCATGCAGAGTGACCCTGATGACCT
CTACTACTGTGGTATATGCACTACTTCGAAGTACAATATATATGCGTACT
CACATATATATATGTACTCACGTTGTGCTTGCCGTAGTCCCGATACCATT
GACCACGCGCCTCGGTCGAGACGGAGCAGGATAACAGCTGGAAATGCTTT
GCTCCACAGGTGCTGCTGGCGGGGGCACTGATGGTCTTCAACGGGAAAAT
GTCGGGCGAGCAGCTCACG
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Coding sequence (CDS) from alignment at S-ischiensis_contig89:454986..455404+

>mRNA_S-ischiensis_contig89.20368.1 ID=mRNA_S-ischiensis_contig89.20368.1|Name=mRNA_S-ischiensis_contig89.20368.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=762bp|location=Sequence derived from alignment at S-ischiensis_contig89:454986..455404+ (Schizocladia ischiensis KU_0333)
TCATACTCCTCTTTTCTATCCCACAATACAAAGAGGCATTCCATAGTTGA
TCAAAGTACTTGGTGCTGTGATGGTATTTCAGGCTTTGACAGATTCGCCG
GGCTTTGGCGGTTTTCCCGAGCTTGGCCGGTTCCGCCAGGTTTGGCCATG
GTGGGGGCCTGCTGTGCCATGCTATGCATGCAGAGTGACCCTGATGACCT
CTACTACTGTGGTATATGCACTACTTCGAAGTACAATATATATGCGTACT
CACATATATATATGTACTCACGTTGTGCTTGCCGTAGTCCCGATACCATT
GACCACGCGCCTCGGTCGAGACGGAGCAGGATAACAGCTGGAAATGCTTT
GCTCCACAGGTGCTGCTGGCGGGGGCACTGATCATACTCCTCTTTTCTAT
CCCACAATACAAAGAGGCATTCCATAGTTGATCAAAGTACTTGGTGCTGT
GATGGTATTTCAGGCTTTGACAGATTCGCCGGGCTTTGGCGGTTTTCCCG
AGCTTGGCCGGTTCCGCCAGGTTTGGCCATGGTGGGGGCCTGCTGTGCCA
TGCTATGCATGCAGAGTGACCCTGATGACCTCTACTACTGTGGTATATGC
ACTACTTCGAAGTACAATATATATGCGTACTCACATATATATATGTACTC
ACGTTGTGCTTGCCGTAGTCCCGATACCATTGACCACGCGCCTCGGTCGA
GACGGAGCAGGATAACAGCTGGAAATGCTTTGCTCCACAGGTGCTGCTGG
CGGGGGCACTGA
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