mRNA_S-ischiensis_contig89.20366.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig89.20366.1
Unique NamemRNA_S-ischiensis_contig89.20366.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig89.20366.1 vs. uniprot
Match: D7FJ84_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJ84_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 1.460e-9
Identity = 44/96 (45.83%), Postives = 63/96 (65.62%), Query Frame = 3 
Query:   69 GDQGG--GHKRARKGLPRDIRKLKSTLKRAADKECQAWDALRTSLQGGGCSSADASGDGGRFLAQTSNEAVL-LQERTVGLVTRDEFRQAREFAEA 347
            G +GG  G KRAR     ++ +LK  L RA++KE Q+WD L+ ++  GG ++AD     GRF A  +N A   ++ERTVGLVT +EFR+ARE A++
Sbjct:   27 GGEGGWKGRKRAR-----ELSQLKDRLDRASEKEQQSWDLLKQAVGKGGGAAADE----GRFKATGTNRAAEEMRERTVGLVTAEEFRKAREAADS 113
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig89.20366.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJ84_ECTSI1.460e-945.83Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig89contigS-ischiensis_contig89:438835..440607 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size429
Cds size402
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig89.20366.1prot_S-ischiensis_contig89.20366.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig89 438861..440607 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817361.6726751-UTR-S-ischiensis_contig89:438834..4388601622817361.6726751-UTR-S-ischiensis_contig89:438834..438860Schizocladia ischiensis KU_0333UTRS-ischiensis_contig89 438835..438860 +
1695741056.7084806-UTR-S-ischiensis_contig89:438834..4388601695741056.7084806-UTR-S-ischiensis_contig89:438834..438860Schizocladia ischiensis KU_0333UTRS-ischiensis_contig89 438835..438860 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817361.6836147-CDS-S-ischiensis_contig89:438860..4391181622817361.6836147-CDS-S-ischiensis_contig89:438860..439118Schizocladia ischiensis KU_0333CDSS-ischiensis_contig89 438861..439118 +
1695741056.722982-CDS-S-ischiensis_contig89:438860..4391181695741056.722982-CDS-S-ischiensis_contig89:438860..439118Schizocladia ischiensis KU_0333CDSS-ischiensis_contig89 438861..439118 +
1622817361.694075-CDS-S-ischiensis_contig89:440463..4406071622817361.694075-CDS-S-ischiensis_contig89:440463..440607Schizocladia ischiensis KU_0333CDSS-ischiensis_contig89 440464..440607 +
1695741056.735989-CDS-S-ischiensis_contig89:440463..4406071695741056.735989-CDS-S-ischiensis_contig89:440463..440607Schizocladia ischiensis KU_0333CDSS-ischiensis_contig89 440464..440607 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig89.20366.1

>prot_S-ischiensis_contig89.20366.1 ID=prot_S-ischiensis_contig89.20366.1|Name=mRNA_S-ischiensis_contig89.20366.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=134bp
MDELYGDSRSHESAGDQGGGHKRARKGLPRDIRKLKSTLKRAADKECQAW
DALRTSLQGGGCSSADASGDGGRFLAQTSNEAVLLQERTVGLVTRDEFRQ
AREFAEASAEASAAAARREREPKEKEAQEAKDML
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mRNA from alignment at S-ischiensis_contig89:438835..440607+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig89.20366.1 ID=mRNA_S-ischiensis_contig89.20366.1|Name=mRNA_S-ischiensis_contig89.20366.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1773bp|location=Sequence derived from alignment at S-ischiensis_contig89:438835..440607+ (Schizocladia ischiensis KU_0333)
ACCGGGGCAGGGGGCCTGCGCCGAGTATGGATGAGTTGTATGGAGATAGC
AGATCACATGAATCGGCGGGCGACCAGGGCGGTGGTCATAAGCGGGCGAG
GAAGGGCCTCCCCCGCGATATCCGAAAGCTCAAGAGCACTCTCAAGCGGG
CTGCTGACAAGGAGTGCCAGGCCTGGGACGCACTCAGGACTTCCCTGCAG
GGGGGCGGGTGTTCGAGTGCCGATGCGAGCGGTGACGGCGGGAGATTTCT
GGCTCAGACGAGCAACGAGGCCGTGCTGCTTCAGGTGAGGAGGGCAGGCG
GAGGATGCCCACCGGGGCGTTTGCACACTCCCTCGTGTTCTTCGCATGTG
TTCCTTGCTTCAGGTTCAAGCTAGTGCTCAAGGGCTTGGGGTGGGTGCAT
GAGGCCCAACCTGTGCGGCGGATGTTTTCTTCTTGCAGCAATACTTCGAA
GTACAGTTGTAGTAGCACGAGCATGTACTCATTAGCCGCGTATCTCGGCG
TAGCCGCCGTGTGCTGCACCGAAGGCACAACAGCTGCCCTCCGTCAGGAG
CAGCTATTTAGCCATGAACTTTGCGCCCCTACCACTATAGCATTTGAAGT
ATGCACTGCTTTGGTACAGACTGTAGCACCCTAACGTCTTTCAAGAGAAT
ACCGTACTCGTACATAGTCCTACGTTTGACAACCCTGCAATGATTGCCCA
TTGCCACGGTACAGCACAGCTACCAGCAGTTCGTTGGTCCGCATTGGGCC
GTGGGCTGCGCGGTGCACTATTTCACCCGAGCCGGGTCCATCTGAACTGC
TGCAGCAAGCAGTAGTAGCCCTCCACATTTGCAATACTGCGGTACATGCA
CTGTAGTATGATACAAGTCACTCAGAGCAATTTTAAGGCAATCAAGTATG
CCGATTCCTTGCTAGAAAGTACCTGCGAAACACACAGTGCAAAGTTTCAT
ACAACACCATCCCCTACTTAAGGGCTACCCGGCCCTGCTTGCGGACCCCT
TACCAGCGGTGCACAACTTGTCTTGCGATCTTGGTCAGAAGATTGACGAA
AATTGACGATTCCTGCCAGATCATCCACTTGCAGGAATCTGAGCAATCCC
TTTGCCACGCTGTGAGGTGTCGTCTGATTTTTTGTTTGGGGCTGCCAGCC
ATTGTGGGCTGTGCTGTCCTGATCAAGATATGTGCACCCCTGCCAAAGTG
AGGCCGTGTCCCATGGCAGCACACCACATTTCAAATGCTTAAGAGTTTGC
GGATGAATTAGATCGTTTTACATACCTCCATGAAGCAGGCATTTTGTGTA
CTGTAAATGGCCGCCTCGCCTGCCACAATGAACACACACGCCGCAGAAGC
AGACGTTTTGCGTCACTGGCCGCTCCGCCTACTTTGCTGCAACACGCAGT
AGCCGCCCCCTGCATGTACGAGTATGCGCTCATTTGCTTGTGTTACGACA
TAGCCTTGTGTGCTTAGTCGACAGCCCAATGTTAGACGATAGGTTTTCCC
GCCTGTACTGATGTACTGCATGCAGTAGCATGCGTTAGATCCACTCTGTC
ACGCCGAACGGGGTCGCGTGGGGTCGAGCCAATATATGAGCTATTTCTGA
AGTGAGTCCTCAACACACAACACCTTCAGGAACGAACAGTGGGGCTGGTA
ACCCGTGACGAGTTCCGCCAGGCGCGGGAGTTCGCAGAGGCTTCTGCTGA
GGCGTCTGCCGCAGCGGCACGGCGTGAACGCGAGCCGAAGGAGAAGGAGG
CGCAGGAGGCGAAAGATATGTTG
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Coding sequence (CDS) from alignment at S-ischiensis_contig89:438835..440607+

>mRNA_S-ischiensis_contig89.20366.1 ID=mRNA_S-ischiensis_contig89.20366.1|Name=mRNA_S-ischiensis_contig89.20366.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=804bp|location=Sequence derived from alignment at S-ischiensis_contig89:438835..440607+ (Schizocladia ischiensis KU_0333)
ATGGATGAGTTGTATGGAGATAGCAGATCACATGAATCGGCGGGCGACCA
GGGCGGTGGTCATAAGCGGGCGAGGAAGGGCCTCCCCCGCGATATCCGAA
AGCTCAAGAGCACTCTCAAGCGGGCTGCTGACAAGGAGTGCCAGGCCTGG
GACGCACTCAGGACTTCCCTGCAGGGGGGCGGGTGTTCGAGTGCCGATGC
GAGCGGTGACGGCGGGAGATTTCTGGCTCAGACGAGCAACGAGGCCGTGC
TGCTTCAGATGGATGAGTTGTATGGAGATAGCAGATCACATGAATCGGCG
GGCGACCAGGGCGGTGGTCATAAGCGGGCGAGGAAGGGCCTCCCCCGCGA
TATCCGAAAGCTCAAGAGCACTCTCAAGCGGGCTGCTGACAAGGAGTGCC
AGGCCTGGGACGCACTCAGGACTTCCCTGCAGGGGGGCGGGTGTTCGAGT
GCCGATGCGAGCGGTGACGGCGGGAGATTTCTGGCTCAGACGAGCAACGA
GGCCGTGCTGCTTCAGGAACGAACAGTGGGGCTGGTAACCCGTGACGAGT
TCCGCCAGGCGCGGGAGTTCGCAGAGGCTTCTGCTGAGGCGTCTGCCGCA
GCGGCACGGCGTGAACGCGAGCCGAAGGAGAAGGAGGCGCAGGAGGCGAA
AGATATGTTGGAACGAACAGTGGGGCTGGTAACCCGTGACGAGTTCCGCC
AGGCGCGGGAGTTCGCAGAGGCTTCTGCTGAGGCGTCTGCCGCAGCGGCA
CGGCGTGAACGCGAGCCGAAGGAGAAGGAGGCGCAGGAGGCGAAAGATAT
GTTG
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