mRNA_S-ischiensis_contig89.20355.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig89.20355.1
Unique NamemRNA_S-ischiensis_contig89.20355.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig89.20355.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig89contigS-ischiensis_contig89:222451..225038 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1392
Cds size1389
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817359.1850252-CDS-S-ischiensis_contig89:222450..2228351622817359.1850252-CDS-S-ischiensis_contig89:222450..222835Schizocladia ischiensis KU_0333CDSS-ischiensis_contig89 222451..222835 +
1695741054.835742-CDS-S-ischiensis_contig89:222450..2228351695741054.835742-CDS-S-ischiensis_contig89:222450..222835Schizocladia ischiensis KU_0333CDSS-ischiensis_contig89 222451..222835 +
1622817359.1977391-CDS-S-ischiensis_contig89:224032..2250361622817359.1977391-CDS-S-ischiensis_contig89:224032..225036Schizocladia ischiensis KU_0333CDSS-ischiensis_contig89 224033..225036 +
1695741054.845972-CDS-S-ischiensis_contig89:224032..2250361695741054.845972-CDS-S-ischiensis_contig89:224032..225036Schizocladia ischiensis KU_0333CDSS-ischiensis_contig89 224033..225036 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig89.20355.1prot_S-ischiensis_contig89.20355.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig89 222451..225036 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig89.20355.1

>prot_S-ischiensis_contig89.20355.1 ID=prot_S-ischiensis_contig89.20355.1|Name=mRNA_S-ischiensis_contig89.20355.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=463bp
FDILEKRHGFSIATALGAADTPVSVQYQEGSAATIYSAPNTSDFVRLPEP
LSSSLSSVPLAPWSSGPPPPPPLAFSPTSSSALSPEEAFLGGEGASTVQA
STHAERAPALRTVYTCNRCGRAAYKLQQGPASTYMDSHNNHPHNPLNEGG
PILSRVLDYTSDRAYLFVGGVSRAWRALWVHHCRRPVTTSLAEAGASAAR
LRWAAASRCPRKRAVCSEAAGAGNLEVLRCTRASGFPWDFWTCAHAAEGG
HLEALLWARANDCPWNELTCTTAARGGRLEVLWWVRANGCSWDGGTCSYA
AHGGHLGVVRWARANGCPWDGATCCYATLGGQLEVLVWARAKGCPWDEAT
CYAAAGGRLELLQWARANGCPWDVHACAKAASEGHFAVVQRARANGCPWN
ARVCACAARRGHLEDLQWARARGCPWDRSTIAEAARSGHIEVLQWVRANG
CSWDGGTCSYAAH
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mRNA from alignment at S-ischiensis_contig89:222451..225038+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig89.20355.1 ID=mRNA_S-ischiensis_contig89.20355.1|Name=mRNA_S-ischiensis_contig89.20355.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2588bp|location=Sequence derived from alignment at S-ischiensis_contig89:222451..225038+ (Schizocladia ischiensis KU_0333)
TTCGATATATTGGAGAAACGGCATGGTTTTAGTATAGCGACAGCCCTCGG
GGCGGCCGATACCCCGGTTTCGGTCCAGTATCAGGAGGGGTCCGCTGCCA
CCATCTACTCTGCCCCTAATACCTCCGATTTTGTCCGGCTACCTGAACCG
CTATCCTCCTCCTTGTCCTCTGTGCCCTTGGCTCCCTGGTCATCGGGACC
ACCTCCTCCGCCCCCCTTGGCATTCTCGCCCACTTCCTCCTCTGCTTTGT
CGCCGGAAGAAGCGTTTTTGGGAGGGGAGGGGGCGTCTACGGTGCAGGCG
TCTACCCACGCGGAGAGAGCGCCGGCCCTGAGGACGGTGTACACCTGCAA
TAGGTGTGGTAGGGCTGCATATAAATTGCAACAAGGTACAATCGCACGTG
TGTGAGATTGAGTGCTCTCGTATTAGTGGTTATCCCACTTAAGTATTGAA
GTGTTCGTATATTAGTGATTATCACATCAAAGAACGTGTGGGAGGGTGCG
GTGCGGGCGACACCCATGAGGGCACAATGAAGTACAGCCGTTCAGGCATT
GCAGTACTAACAGGAACAACACAGGGCGAGGTGCAGGCCACGTCACTAAA
GACCTCGACAGTGGCCCTTCCTTCGCTCGCCAGGGGAGGTTTGTGTGGGG
AAACCTACTGCAGTACCACAGAAGGTCACAAGGTCACAGCTACCGCACGG
GAACACGTCAAAGACGCCAAGCTTGCTACAGCCCTCCTCTACAGTTGGTA
CACCAGGTAGTGCTGTCGTACTCTACTTAAGTAGAAATAACTTGTGTTGT
GTACAGTGATACTGCAACGTGCAGCTTGACAATGGTCTTGAGACGACAGC
TAGCACAAGGTGCGCACAGTTTCATCATCGTGCCTTACAGTTTCATCGTC
ACGTCGTACCTTGGTTCGTACAAGCTTGTCAGCTATGGGTGCCGTGGTGA
GTCGCAGTGCGACGCCCTTTCCGCTCGCGGCCACCCCTTCCATGACAGAC
GCCTCCACCTGTCGGTTACAGTTACACCCAGTTACGTCCACCATGGTGTA
CCATGTGGTAAGGTACCGCGGTATGAGCTGTGCAGCACACATGTCATTGT
GCTTGGAGATACACGCTATGCGCTACTGTACTCGAGTACAATGCCTACTA
CTTCCTTGGAAGTACTTCGAAGTACAGTATAGGAACAGAGAAGCATGCGT
TCACATATGCAGGTGGACAAGACCTGGTCGCAGGTTGTGTGCTAGACTTT
CATTGGTATAGTTTTCACCCAGAACCTCAACCGAGGGCCGCCCTTTCCAG
TATCGGTGTGATGATGGGGCCCTAATGCACTGTAGTTTTTGACACCACAT
CACATCGCGTCGTCACCCACGAGCTCAACGATGGGCCGCTCTGTCCAGCA
CCGATGTGATGTGATGGAACTCTACAGTGTACACAAATTCCCCAGCTTTC
GCCTCAGCCAGCCAGGCCACGGGACTGACATGACAGATCCCACCATTTTC
TCTCTCCTCACCCGGAAGAACTTCCGGCCCCGCCCCGCCCCCACGCGCCC
CGCCCACCCCCCCACCCTCGCGCACGCTGCAGGCCCAGCGAGCACATACA
TGGACAGCCACAACAACCATCCCCACAACCCCCTGAACGAGGGCGGCCCC
ATCCTCTCCCGGGTCCTCGACTACACCTCGGACAGGGCCTACCTGTTCGT
GGGTGGGGTTTCGCGGGCCTGGCGGGCGCTGTGGGTTCACCACTGCCGCC
GCCCCGTCACGACGAGCCTGGCCGAGGCCGGGGCTTCTGCGGCCCGTCTG
CGGTGGGCCGCGGCCAGCCGCTGCCCCCGGAAGCGCGCCGTCTGCTCCGA
GGCCGCCGGAGCGGGGAACCTGGAGGTTCTGCGGTGCACGAGGGCCAGCG
GCTTCCCCTGGGACTTTTGGACCTGCGCCCACGCCGCGGAGGGGGGGCAC
CTTGAGGCCCTGCTGTGGGCCAGGGCGAACGACTGCCCCTGGAACGAGTT
GACCTGCACGACGGCCGCCCGCGGCGGGCGCCTCGAGGTGTTGTGGTGGG
TGAGGGCCAACGGCTGTTCCTGGGACGGGGGCACCTGCTCCTACGCCGCC
CATGGGGGGCACCTAGGGGTTGTTCGGTGGGCCAGGGCCAACGGGTGCCC
CTGGGACGGAGCCACCTGCTGCTACGCCACCCTCGGGGGCCAACTCGAGG
TCCTGGTGTGGGCGAGGGCTAAAGGGTGCCCCTGGGACGAAGCCACCTGC
TATGCCGCTGCGGGAGGGCGCCTTGAATTGCTGCAGTGGGCGAGGGCTAA
TGGGTGCCCCTGGGACGTGCACGCCTGCGCCAAGGCTGCCTCTGAGGGGC
ACTTTGCTGTCGTCCAGCGGGCGAGGGCTAACGGGTGCCCCTGGAACGCG
CGTGTCTGCGCATGCGCCGCCCGGAGGGGGCACCTCGAGGATCTCCAGTG
GGCCAGGGCTCGCGGCTGCCCCTGGGACAGGTCGACCATCGCCGAGGCCG
CCCGCAGCGGGCACATCGAGGTGTTGCAGTGGGTGAGGGCCAACGGCTGT
TCCTGGGACGGGGGCACCTGCTCCTACGCCGCCCATGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig89:222451..225038+

>mRNA_S-ischiensis_contig89.20355.1 ID=mRNA_S-ischiensis_contig89.20355.1|Name=mRNA_S-ischiensis_contig89.20355.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2778bp|location=Sequence derived from alignment at S-ischiensis_contig89:222451..225038+ (Schizocladia ischiensis KU_0333)
TTCGATATATTGGAGAAACGGCATGGTTTTAGTATAGCGACAGCCCTCGG
GGCGGCCGATACCCCGGTTTCGGTCCAGTATCAGGAGGGGTCCGCTGCCA
CCATCTACTCTGCCCCTAATACCTCCGATTTTGTCCGGCTACCTGAACCG
CTATCCTCCTCCTTGTCCTCTGTGCCCTTGGCTCCCTGGTCATCGGGACC
ACCTCCTCCGCCCCCCTTGGCATTCTCGCCCACTTCCTCCTCTGCTTTGT
CGCCGGAAGAAGCGTTTTTGGGAGGGGAGGGGGCGTCTACGGTGCAGGCG
TCTACCCACGCGGAGAGAGCGCCGGCCCTGAGGACGGTGTACACCTGCAA
TAGGTGTGGTAGGGCTGCATATAAATTGCAACAAGTTCGATATATTGGAG
AAACGGCATGGTTTTAGTATAGCGACAGCCCTCGGGGCGGCCGATACCCC
GGTTTCGGTCCAGTATCAGGAGGGGTCCGCTGCCACCATCTACTCTGCCC
CTAATACCTCCGATTTTGTCCGGCTACCTGAACCGCTATCCTCCTCCTTG
TCCTCTGTGCCCTTGGCTCCCTGGTCATCGGGACCACCTCCTCCGCCCCC
CTTGGCATTCTCGCCCACTTCCTCCTCTGCTTTGTCGCCGGAAGAAGCGT
TTTTGGGAGGGGAGGGGGCGTCTACGGTGCAGGCGTCTACCCACGCGGAG
AGAGCGCCGGCCCTGAGGACGGTGTACACCTGCAATAGGTGTGGTAGGGC
TGCATATAAATTGCAACAAGGCCCAGCGAGCACATACATGGACAGCCACA
ACAACCATCCCCACAACCCCCTGAACGAGGGCGGCCCCATCCTCTCCCGG
GTCCTCGACTACACCTCGGACAGGGCCTACCTGTTCGTGGGTGGGGTTTC
GCGGGCCTGGCGGGCGCTGTGGGTTCACCACTGCCGCCGCCCCGTCACGA
CGAGCCTGGCCGAGGCCGGGGCTTCTGCGGCCCGTCTGCGGTGGGCCGCG
GCCAGCCGCTGCCCCCGGAAGCGCGCCGTCTGCTCCGAGGCCGCCGGAGC
GGGGAACCTGGAGGTTCTGCGGTGCACGAGGGCCAGCGGCTTCCCCTGGG
ACTTTTGGACCTGCGCCCACGCCGCGGAGGGGGGGCACCTTGAGGCCCTG
CTGTGGGCCAGGGCGAACGACTGCCCCTGGAACGAGTTGACCTGCACGAC
GGCCGCCCGCGGCGGGCGCCTCGAGGTGTTGTGGTGGGTGAGGGCCAACG
GCTGTTCCTGGGACGGGGGCACCTGCTCCTACGCCGCCCATGGGGGGCAC
CTAGGGGTTGTTCGGTGGGCCAGGGCCAACGGGTGCCCCTGGGACGGAGC
CACCTGCTGCTACGCCACCCTCGGGGGCCAACTCGAGGTCCTGGTGTGGG
CGAGGGCTAAAGGGTGCCCCTGGGACGAAGCCACCTGCTATGCCGCTGCG
GGAGGGCGCCTTGAATTGCTGCAGTGGGCGAGGGCTAATGGGTGCCCCTG
GGACGTGCACGCCTGCGCCAAGGCTGCCTCTGAGGGGCACTTTGCTGTCG
TCCAGCGGGCGAGGGCTAACGGGTGCCCCTGGAACGCGCGTGTCTGCGCA
TGCGCCGCCCGGAGGGGGCACCTCGAGGATCTCCAGTGGGCCAGGGCTCG
CGGCTGCCCCTGGGACAGGTCGACCATCGCCGAGGCCGCCCGCAGCGGGC
ACATCGAGGTGTTGCAGTGGGTGAGGGCCAACGGCTGTTCCTGGGACGGG
GGCACCTGCTCCTACGCCGCCCATGCCCAGCGAGCACATACATGGACAGC
CACAACAACCATCCCCACAACCCCCTGAACGAGGGCGGCCCCATCCTCTC
CCGGGTCCTCGACTACACCTCGGACAGGGCCTACCTGTTCGTGGGTGGGG
TTTCGCGGGCCTGGCGGGCGCTGTGGGTTCACCACTGCCGCCGCCCCGTC
ACGACGAGCCTGGCCGAGGCCGGGGCTTCTGCGGCCCGTCTGCGGTGGGC
CGCGGCCAGCCGCTGCCCCCGGAAGCGCGCCGTCTGCTCCGAGGCCGCCG
GAGCGGGGAACCTGGAGGTTCTGCGGTGCACGAGGGCCAGCGGCTTCCCC
TGGGACTTTTGGACCTGCGCCCACGCCGCGGAGGGGGGGCACCTTGAGGC
CCTGCTGTGGGCCAGGGCGAACGACTGCCCCTGGAACGAGTTGACCTGCA
CGACGGCCGCCCGCGGCGGGCGCCTCGAGGTGTTGTGGTGGGTGAGGGCC
AACGGCTGTTCCTGGGACGGGGGCACCTGCTCCTACGCCGCCCATGGGGG
GCACCTAGGGGTTGTTCGGTGGGCCAGGGCCAACGGGTGCCCCTGGGACG
GAGCCACCTGCTGCTACGCCACCCTCGGGGGCCAACTCGAGGTCCTGGTG
TGGGCGAGGGCTAAAGGGTGCCCCTGGGACGAAGCCACCTGCTATGCCGC
TGCGGGAGGGCGCCTTGAATTGCTGCAGTGGGCGAGGGCTAATGGGTGCC
CCTGGGACGTGCACGCCTGCGCCAAGGCTGCCTCTGAGGGGCACTTTGCT
GTCGTCCAGCGGGCGAGGGCTAACGGGTGCCCCTGGAACGCGCGTGTCTG
CGCATGCGCCGCCCGGAGGGGGCACCTCGAGGATCTCCAGTGGGCCAGGG
CTCGCGGCTGCCCCTGGGACAGGTCGACCATCGCCGAGGCCGCCCGCAGC
GGGCACATCGAGGTGTTGCAGTGGGTGAGGGCCAACGGCTGTTCCTGGGA
CGGGGGCACCTGCTCCTACGCCGCCCAT
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