mRNA_S-ischiensis_contig89.20348.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig89.20348.1
Unique NamemRNA_S-ischiensis_contig89.20348.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig89.20348.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig89contigS-ischiensis_contig89:117180..117892 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size713
Cds size393
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817359.9094002-UTR-S-ischiensis_contig89:117179..1174991622817359.9094002-UTR-S-ischiensis_contig89:117179..117499Schizocladia ischiensis KU_0333UTRS-ischiensis_contig89 117180..117499 +
1695741055.3919773-UTR-S-ischiensis_contig89:117179..1174991695741055.3919773-UTR-S-ischiensis_contig89:117179..117499Schizocladia ischiensis KU_0333UTRS-ischiensis_contig89 117180..117499 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817359.9211392-CDS-S-ischiensis_contig89:117499..1178921622817359.9211392-CDS-S-ischiensis_contig89:117499..117892Schizocladia ischiensis KU_0333CDSS-ischiensis_contig89 117500..117892 +
1695741055.4024937-CDS-S-ischiensis_contig89:117499..1178921695741055.4024937-CDS-S-ischiensis_contig89:117499..117892Schizocladia ischiensis KU_0333CDSS-ischiensis_contig89 117500..117892 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig89.20348.1prot_S-ischiensis_contig89.20348.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig89 117500..117892 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig89.20348.1

>prot_S-ischiensis_contig89.20348.1 ID=prot_S-ischiensis_contig89.20348.1|Name=mRNA_S-ischiensis_contig89.20348.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=131bp
MELVHVDRVILFPVAIEVFKVHVVLDQPPHVDDLPLMIFCLGHRFVDEKC
RVTCCSDACAPRFAAAHVAPTFAAHGLVSPDVFHIPCISPTPMPSCLAAK
RAWVCPRLHILPKVCVCRDTPPLQSCSPAV*
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mRNA from alignment at S-ischiensis_contig89:117180..117892+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig89.20348.1 ID=mRNA_S-ischiensis_contig89.20348.1|Name=mRNA_S-ischiensis_contig89.20348.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=713bp|location=Sequence derived from alignment at S-ischiensis_contig89:117180..117892+ (Schizocladia ischiensis KU_0333)
ACCATCCTGTCGCTCACGTGTGGCCCGCTGATCCATCAGCCAGGCCGGTG
GTATGTCCAAGCAAGCACAAACTCCACTAAAGATCCCCGGGGAGATAACA
TTCTCTTCCATATCATGCCAACCCATCGGATACCAGGAGCGGGCCAGTCG
TTTGCCAAACCTCGCTCGGGTCTCCGCCCCTTGGTAGAAATTGTCTTGCG
ATGGCCAGAACTCGCACACATGGGGCAGATGGAAGGCTCCCACCAGGTTG
CTCTGCATCCAGGTGAAGGTCCCCTGGGCTCCCTGGAACTCTCCGCAGGA
AGCTCCCTCCAGCGCCCTCCATGGAGCTCGTCCACGTTGATAGGGTGATC
CTGTTCCCTGTTGCCATTGAAGTATTCAAAGTCCACGTCGTTCTCGACCA
GCCACCTCATGTTGATGATCTTCCGCTGATGATCTTCTGTCTTGGACACC
GCTTCGTGGATGAGAAATGTCGCGTGACCTGCTGTAGTGATGCATGCGCG
CCCAGGTTTGCTGCCGCCCACGTTGCTCCCACGTTTGCGGCCCATGGGCT
TGTCAGCCCGGACGTTTTCCACATCCCCTGCATCAGCCCCACGCCCATGC
CTAGCTGCCTGGCCGCAAAACGCGCGTGGGTCTGTCCGCGGCTCCACATC
CTCCCAAAAGTGTGTGTGTGCCGTGACACGCCGCCCCTGCAGTCTTGCTC
GCCGGCGGTATAA
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Coding sequence (CDS) from alignment at S-ischiensis_contig89:117180..117892+

>mRNA_S-ischiensis_contig89.20348.1 ID=mRNA_S-ischiensis_contig89.20348.1|Name=mRNA_S-ischiensis_contig89.20348.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=786bp|location=Sequence derived from alignment at S-ischiensis_contig89:117180..117892+ (Schizocladia ischiensis KU_0333)
ATGGAGCTCGTCCACGTTGATAGGGTGATCCTGTTCCCTGTTGCCATTGA
AGTATTCAAAGTCCACGTCGTTCTCGACCAGCCACCTCATGTTGATGATC
TTCCGCTGATGATCTTCTGTCTTGGACACCGCTTCGTGGATGAGAAATGT
CGCGTGACCTGCTGTAGTGATGCATGCGCGCCCAGGTTTGCTGCCGCCCA
CGTTGCTCCCACGTTTGCGGCCCATGGGCTTGTCAGCCCGGACGTTTTCC
ACATCCCCTGCATCAGCCCCACGCCCATGCCTAGCTGCCTGGCCGCAAAA
CGCGCGTGGGTCTGTCCGCGGCTCCACATCCTCCCAAAAGTGTGTGTGTG
CCGTGACACGCCGCCCCTGCAGTCTTGCTCGCCGGCGGTATAAATGGAGC
TCGTCCACGTTGATAGGGTGATCCTGTTCCCTGTTGCCATTGAAGTATTC
AAAGTCCACGTCGTTCTCGACCAGCCACCTCATGTTGATGATCTTCCGCT
GATGATCTTCTGTCTTGGACACCGCTTCGTGGATGAGAAATGTCGCGTGA
CCTGCTGTAGTGATGCATGCGCGCCCAGGTTTGCTGCCGCCCACGTTGCT
CCCACGTTTGCGGCCCATGGGCTTGTCAGCCCGGACGTTTTCCACATCCC
CTGCATCAGCCCCACGCCCATGCCTAGCTGCCTGGCCGCAAAACGCGCGT
GGGTCTGTCCGCGGCTCCACATCCTCCCAAAAGTGTGTGTGTGCCGTGAC
ACGCCGCCCCTGCAGTCTTGCTCGCCGGCGGTATAA
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