mRNA_S-ischiensis_contig89.20339.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig89.20339.1 vs. uniprot
Match: A0A835Z936_9STRA (Thioredoxin domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z936_9STRA) HSP 1 Score: 96.3 bits (238), Expect = 1.740e-20 Identity = 54/134 (40.30%), Postives = 80/134 (59.70%), Query Frame = 3
Query: 369 TLTSAEAGVQRVHDQEEYLNALAESQDQEVVVKFFTPYCRSCKAMDRGFKRMAAQYKKSGAPVKFLEVDVTEARDLQKSLDVMAVPTIMVHAGEEGLVERFSCGPSKLSKLKQVVEKHLGHLERIAKNIEGALD 770
T+ + A V RV +EY LAE+ + VV K+F P+CRSCKAMD FKR+A + V F E+D+ +R+L++ V A+P I +HAG GLVE F+CGPSK+ L + ++ + +AK G ++
Sbjct: 11 TVDLSTAPVTRVTTSQEYHALLAENPESLVVFKWFAPWCRSCKAMDLKFKRLALE----NPCVVFAEIDIDVSRELKRQHGVKAIPAIHMHAGHLGLVENFTCGPSKVPLLSRRIDMYANVAAYVAKAKGGLME 140
BLAST of mRNA_S-ischiensis_contig89.20339.1 vs. uniprot
Match: A0A6H5KYE3_9PHAE (Thioredoxin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYE3_9PHAE) HSP 1 Score: 90.9 bits (224), Expect = 7.880e-18 Identity = 54/144 (37.50%), Postives = 82/144 (56.94%), Query Frame = 3
Query: 378 SAEAGVQRVHDQEEYLNALAESQDQEVVVKFFTPYCRSCKAMDRGFKRMAAQYKKSGAPVKFLEVDVTEARDLQKSLDVMAVPTIMVHAGEEGLVERFSCGPSKLSKLKQVVE--KHLGHLERIAKNIEGALDGALDDVNFGGP 803
+A A V + + EY L + + VV+KFF P+CRSCKA+D ++RMA + VKF+E+DV ++ DL+K L V AVPT+ +HAG G V F+CGP K +L + ++ K + L G ++ D++N P
Sbjct: 73 TANAPVTLIKSKAEYDEILRHNINSLVVIKFFAPWCRSCKALDVKYRRMAVE----NDDVKFVEIDVHQSPDLKKVLGVRAVPTVKLHAGPLGQVASFTCGPRKAPELARKIQLCKDVPALTARLGKGSGMIEMLADELNSDKP 212
BLAST of mRNA_S-ischiensis_contig89.20339.1 vs. uniprot
Match: A0A7S3YAB7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YAB7_HETAK) HSP 1 Score: 85.1 bits (209), Expect = 7.780e-16 Identity = 46/125 (36.80%), Postives = 78/125 (62.40%), Query Frame = 3
Query: 360 PQDTLTSAEAGVQRVHDQEEYLNALAESQDQEVVVKFFTPYCRSCKAMDRGFKRMA-AQYKKSGAPVKFLEVDVTEARD--LQKSLDVMAVPTIMVHAGEEGLVERFSCGPSKLSKLKQVVEKHL 725
P + +++AE V V +EYL+ L +S++Q VV+KF+ P+CRSCKA+D F++ A +Y + V+F E DV + ++ ++K L++ +P + ++ G +G VE F CGPSK + +E L
Sbjct: 79 PSENMSNAEDRVGEVWGMQEYLDVLTQSKNQLVVMKFYAPWCRSCKALDVKFRKWARGEY--AARDVRFFECDVFDPQNAAIKKMLEIDNIPLVHMYQGSQGKVEDFKCGPSKFEYFVERLEARL 201
BLAST of mRNA_S-ischiensis_contig89.20339.1 vs. uniprot
Match: A0A7S3VCG8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VCG8_9STRA) HSP 1 Score: 86.7 bits (213), Expect = 2.260e-15 Identity = 38/108 (35.19%), Postives = 73/108 (67.59%), Query Frame = 3
Query: 390 GVQRVHDQEEYLNALAESQDQEVVVKFFTPYCRSCKAMDRGFKRMAAQYKKSGAPVKFLEVDVTEARDLQKSLDVMAVPTIMVHAGEEGLVERFSCGPSKLSKLKQVV 713
G+ + +EE+ L ++QD+ +++KF+ P+CR+CK ++ F +++ K + P+ F ++ V A++ K+L V+A+P++ ++ GEEGL+E F CGPSK+ LK+ +
Sbjct: 115 GIYDLESKEEHQALLEQNQDKIILLKFYAPWCRACKGLEPKFIQISKDKKYAKLPLVFAQLSVANAKEYVKALGVLALPSVHIYGGEEGLLESFPCGPSKVPILKKKI 222
BLAST of mRNA_S-ischiensis_contig89.20339.1 vs. uniprot
Match: B8CB63_THAPS (Thioredoxin domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CB63_THAPS) HSP 1 Score: 78.6 bits (192), Expect = 5.410e-15 Identity = 34/87 (39.08%), Postives = 60/87 (68.97%), Query Frame = 3
Query: 447 DQEVVVKFFTPYCRSCKAMDRGFKRMAAQYKKSGAPVKFLEVDVTEARDLQKSLDVMAVPTIMVHAGEEGLVERFSCGPSKLSKLKQ 707
D+ +V+KF+ P+CR+CKA++ + +++ + S P+ F ++ V + KSL ++A+P++ ++AG EGLVE F CGPSK+ LK+
Sbjct: 1 DKLMVIKFYAPWCRACKAVEPKYVQISKDPQYSSIPIVFGQLSVQHNKAYVKSLGILALPSMQIYAGSEGLVENFPCGPSKIPMLKR 87
BLAST of mRNA_S-ischiensis_contig89.20339.1 vs. uniprot
Match: A0A7S1XH33_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XH33_9RHOD) HSP 1 Score: 80.1 bits (196), Expect = 2.150e-14 Identity = 46/119 (38.66%), Postives = 72/119 (60.50%), Query Frame = 3
Query: 378 SAEAGVQRVHDQEEYLNALAESQDQEVVVKFFTPYCRSCKAMDRGFKRMAAQYKKSG---APVKFLEVDVTEARDLQKSLDVMAVPTIMVHAGEEGLVERFSCGPSKLSKLKQVVEKHL 725
S + V+ +H + E+L ALA + D+ VVVK++ PYCRSCKA+ F++ A + ++ V F EVD++E + L ++ V +PTI + + G+VE F+ GPSK LK V + L
Sbjct: 70 STPSPVRALHGEGEFLAALASADDRLVVVKWYAPYCRSCKALGVKFEKYARETVRASWAKGRVLFFEVDISENKQLYRAHQVQYLPTIRFYKRDLGMVEDFTVGPSKFQILKAKVTQWL 188
BLAST of mRNA_S-ischiensis_contig89.20339.1 vs. uniprot
Match: K0SW29_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SW29_THAOC) HSP 1 Score: 82.8 bits (203), Expect = 4.620e-14 Identity = 38/106 (35.85%), Postives = 68/106 (64.15%), Query Frame = 3
Query: 390 GVQRVHDQEEYLNALAESQDQEVVVKFFTPYCRSCKAMDRGFKRMAAQYKKSGAPVKFLEVDVTEARDLQKSLDVMAVPTIMVHAGEEGLVERFSCGPSKLSKLKQ 707
G+ + E++ L + D+ +V+KFF P+CR+CK+++ + +++ K + P+ F ++ V + KSL +MA+P++ ++AG EGLVE F CGPSK+ LK+
Sbjct: 89 GIWDIQTPEQHTAWLDANSDKIMVIKFFAPWCRACKSVEPKYVQISRDPKYANIPIIFGQLSVQNNKSYVKSLGIMALPSVQIYAGSEGLVENFPCGPSKIPLLKR 194
BLAST of mRNA_S-ischiensis_contig89.20339.1 vs. uniprot
Match: A0A7S2UB36_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UB36_9STRA) HSP 1 Score: 81.6 bits (200), Expect = 1.130e-13 Identity = 42/107 (39.25%), Postives = 70/107 (65.42%), Query Frame = 3
Query: 390 GVQRVHDQEEYLNALAESQDQEVVVKFFTPYCRSCKAMDRGFKRMAAQYKKSGAPVKFLEVDVTEARDLQKSLDVMAVPTIMVHAGEEG-LVERFSCGPSKLSKLKQ 707
G+ + D+E++L L + +D+ VV+KF+ P+CR+CKA+ F ++ K G P+ + ++ V +D KSL V+A+P++ ++AG G LVE F CGPSK+ LK+
Sbjct: 75 GMYEIIDKEQHLAFLKKHEDKLVVLKFYAPWCRACKALAPRFVMISQDEKYKGLPMVWAQMSVQHNKDYIKSLGVLALPSVHIYAGGAGGLVENFPCGPSKVPILKR 181
BLAST of mRNA_S-ischiensis_contig89.20339.1 vs. uniprot
Match: A0A7S1DEN1_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DEN1_CYCTE) HSP 1 Score: 72.0 bits (175), Expect = 1.600e-11 Identity = 37/113 (32.74%), Postives = 69/113 (61.06%), Query Frame = 3
Query: 393 VQRVHDQEEYLNALAESQDQEVVVKFFTPYCRSCKAMDRGFKRMAAQY-KKSGAPVKFLEVDVTEAR-DLQKSLDVMAVPTIMVHAGEEGLVERFSCGPSKLSKLKQVVEKHL 725
++RV + ++ NA+ + D+ VVV+++ P+CR+CKA +KR+ ++ S + VKF++ VT+ DL KSL + +P ++ E+GLVE G + S ++V++ +L
Sbjct: 67 IERVENFADFRNAVMDETDKIVVVRYYAPWCRACKAATPSYKRLTSEILSSSSSAVKFVDCPVTQTNTDLHKSLGIKTIPFAHIYHPEDGLVEEQKIGRRQFSSFEKVLKSYL 179
BLAST of mRNA_S-ischiensis_contig89.20339.1 vs. uniprot
Match: A0A7S1TN71_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1TN71_9RHOD) HSP 1 Score: 72.0 bits (175), Expect = 1.820e-11 Identity = 41/108 (37.96%), Postives = 63/108 (58.33%), Query Frame = 3
Query: 417 EYLNALAESQDQEVVVKFFTPYCRSCKAMDRGFKRMAAQYKKSGAPVKFLEVDVTEARDLQKSLDVMAVPTIMVHAGEEGLVERFSCGPSKLSKL-KQVVEKHLGHLE 737
+YL AL S ++ VV+KF+ P+CRSCKAM+ KR+A +Y + + F EVD E +L + + V ++P + G G VE F+ GP++ L ++V E G E
Sbjct: 90 DYLAALECSSERLVVIKFYAPWCRSCKAMEPKVKRLAREYPE----ILFCEVDFQENHELCRRIGVKSIPAFHFYDGSAGRVEDFTAGPARAKMLIEKVAEYAAGRCE 193 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig89.20339.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 20
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig89.20339.1 >prot_S-ischiensis_contig89.20339.1 ID=prot_S-ischiensis_contig89.20339.1|Name=mRNA_S-ischiensis_contig89.20339.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=227bp MNSLVAVVALWASSVYGFVAPSLSLSVASGPRRSTSPASSLPGFRAATGPback to top mRNA from alignment at S-ischiensis_contig89:31688..33037- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig89.20339.1 ID=mRNA_S-ischiensis_contig89.20339.1|Name=mRNA_S-ischiensis_contig89.20339.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1350bp|location=Sequence derived from alignment at S-ischiensis_contig89:31688..33037- (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig89:31688..33037- >mRNA_S-ischiensis_contig89.20339.1 ID=mRNA_S-ischiensis_contig89.20339.1|Name=mRNA_S-ischiensis_contig89.20339.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1362bp|location=Sequence derived from alignment at S-ischiensis_contig89:31688..33037- (Schizocladia ischiensis KU_0333)back to top |