mRNA_S-ischiensis_contig88.20325.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig88.20325.1
Unique NamemRNA_S-ischiensis_contig88.20325.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig88.20325.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig88contigS-ischiensis_contig88:431077..431438 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size362
Cds size333
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817356.3737214-UTR-S-ischiensis_contig88:431076..4311051622817356.3737214-UTR-S-ischiensis_contig88:431076..431105Schizocladia ischiensis KU_0333UTRS-ischiensis_contig88 431077..431105 +
1695741052.4742308-UTR-S-ischiensis_contig88:431076..4311051695741052.4742308-UTR-S-ischiensis_contig88:431076..431105Schizocladia ischiensis KU_0333UTRS-ischiensis_contig88 431077..431105 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817356.3908126-CDS-S-ischiensis_contig88:431105..4314381622817356.3908126-CDS-S-ischiensis_contig88:431105..431438Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 431106..431438 +
1695741052.4933345-CDS-S-ischiensis_contig88:431105..4314381695741052.4933345-CDS-S-ischiensis_contig88:431105..431438Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 431106..431438 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig88.20325.1prot_S-ischiensis_contig88.20325.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig88 431106..431438 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig88.20325.1

>prot_S-ischiensis_contig88.20325.1 ID=prot_S-ischiensis_contig88.20325.1|Name=mRNA_S-ischiensis_contig88.20325.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=111bp
MPEPLGRDLRPHAGKRPVDSTAAFSSTSAVSPKSTSTPPPMPPPPPPSPP
PLSILAVPENETAVPVPEKRATLRCCCPGCWRGGAAPPRKVRVPVGANVP
DWENMAAFCGV
back to top

mRNA from alignment at S-ischiensis_contig88:431077..431438+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig88.20325.1 ID=mRNA_S-ischiensis_contig88.20325.1|Name=mRNA_S-ischiensis_contig88.20325.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=362bp|location=Sequence derived from alignment at S-ischiensis_contig88:431077..431438+ (Schizocladia ischiensis KU_0333)
GGGGGCTGCTGCTACGGCTACGGCTAAAGATGCCGGAGCCCCTGGGCAGG
GACTTGCGGCCCCATGCGGGGAAGCGACCGGTGGATTCAACCGCTGCGTT
CTCGTCGACCTCGGCCGTCTCCCCGAAGTCGACCTCCACTCCGCCGCCGA
TGCCGCCGCCGCCGCCACCATCACCACCTCCCCTGTCTATCCTTGCAGTG
CCAGAGAATGAGACCGCCGTGCCGGTGCCAGAGAAGCGCGCCACCTTGCG
TTGTTGCTGCCCCGGCTGCTGGCGGGGGGGTGCCGCCCCCCCCCGCAAGG
TGCGTGTGCCTGTTGGTGCGAATGTGCCAGACTGGGAGAACATGGCCGCC
TTTTGCGGGGTG
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig88:431077..431438+

>mRNA_S-ischiensis_contig88.20325.1 ID=mRNA_S-ischiensis_contig88.20325.1|Name=mRNA_S-ischiensis_contig88.20325.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=666bp|location=Sequence derived from alignment at S-ischiensis_contig88:431077..431438+ (Schizocladia ischiensis KU_0333)
ATGCCGGAGCCCCTGGGCAGGGACTTGCGGCCCCATGCGGGGAAGCGACC
GGTGGATTCAACCGCTGCGTTCTCGTCGACCTCGGCCGTCTCCCCGAAGT
CGACCTCCACTCCGCCGCCGATGCCGCCGCCGCCGCCACCATCACCACCT
CCCCTGTCTATCCTTGCAGTGCCAGAGAATGAGACCGCCGTGCCGGTGCC
AGAGAAGCGCGCCACCTTGCGTTGTTGCTGCCCCGGCTGCTGGCGGGGGG
GTGCCGCCCCCCCCCGCAAGGTGCGTGTGCCTGTTGGTGCGAATGTGCCA
GACTGGGAGAACATGGCCGCCTTTTGCGGGGTGATGCCGGAGCCCCTGGG
CAGGGACTTGCGGCCCCATGCGGGGAAGCGACCGGTGGATTCAACCGCTG
CGTTCTCGTCGACCTCGGCCGTCTCCCCGAAGTCGACCTCCACTCCGCCG
CCGATGCCGCCGCCGCCGCCACCATCACCACCTCCCCTGTCTATCCTTGC
AGTGCCAGAGAATGAGACCGCCGTGCCGGTGCCAGAGAAGCGCGCCACCT
TGCGTTGTTGCTGCCCCGGCTGCTGGCGGGGGGGTGCCGCCCCCCCCCGC
AAGGTGCGTGTGCCTGTTGGTGCGAATGTGCCAGACTGGGAGAACATGGC
CGCCTTTTGCGGGGTG
back to top