mRNA_S-ischiensis_contig88.20310.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig88.20310.1
Unique NamemRNA_S-ischiensis_contig88.20310.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig88.20310.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig88contigS-ischiensis_contig88:317481..318112 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size634
Cds size603
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817356.1922028-UTR-S-ischiensis_contig88:317480..3175091622817356.1922028-UTR-S-ischiensis_contig88:317480..317509Schizocladia ischiensis KU_0333UTRS-ischiensis_contig88 317481..317509 +
1695741052.39552-UTR-S-ischiensis_contig88:317480..3175091695741052.39552-UTR-S-ischiensis_contig88:317480..317509Schizocladia ischiensis KU_0333UTRS-ischiensis_contig88 317481..317509 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817356.2027013-CDS-S-ischiensis_contig88:317509..3181121622817356.2027013-CDS-S-ischiensis_contig88:317509..318112Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 317510..318112 +
1695741052.4048574-CDS-S-ischiensis_contig88:317509..3181121695741052.4048574-CDS-S-ischiensis_contig88:317509..318112Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 317510..318112 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig88.20310.1prot_S-ischiensis_contig88.20310.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig88 317510..318112 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig88.20310.1

>prot_S-ischiensis_contig88.20310.1 ID=prot_S-ischiensis_contig88.20310.1|Name=mRNA_S-ischiensis_contig88.20310.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=201bp
MVRAVVPPPGGKWLALPVVQPHPPPVHRGWAARAVTTCAPPAGKGSSTRR
RPPLHWRTALHTHSAAAPEGDGDGSGESGYGGGTMAPPRGRTAAHPQSAA
AASLRGVSADPCTPRATPGEEDEQERQGQRQGHDRGRGTPAAVAAGHNLP
MPPPPLDSASSEGGAVGPPGAPDAVAAAALGAAAKAEAAAIAVAAAQAAM
A
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mRNA from alignment at S-ischiensis_contig88:317481..318112+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig88.20310.1 ID=mRNA_S-ischiensis_contig88.20310.1|Name=mRNA_S-ischiensis_contig88.20310.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=632bp|location=Sequence derived from alignment at S-ischiensis_contig88:317481..318112+ (Schizocladia ischiensis KU_0333)
CGGCTGACTTGTACGTAGTCTCGGTCATCATGGTGAGGGCCGTGGTGCCG
CCGCCGGGCGGGAAGTGGTTGGCCCTCCCTGTTGTTCAACCCCACCCCCC
GCCCGTCCACCGCGGTTGGGCCGCGAGAGCCGTGACGACATGTGCGCCCC
CCGCGGGAAAGGGCAGCAGCACACGCAGACGGCCCCCTCTGCACTGGCGC
ACCGCTCTACACACACACTCTGCCGCCGCCCCCGAGGGCGACGGGGACGG
GAGCGGAGAGAGTGGCTACGGCGGCGGCACGATGGCGCCCCCGCGCGGGC
GCACCGCCGCTCACCCACAGTCGGCGGCGGCTGCGTCTCTGCGTGGTGTG
AGCGCCGACCCCTGCACGCCTCGCGCCACTCCTGGCGAAGAAGATGAGCA
AGAGAGGCAGGGGCAGCGTCAGGGGCACGATCGGGGCCGCGGGACCCCGG
CAGCGGTGGCGGCGGGTCACAATCTCCCGATGCCGCCGCCTCCCCTCGAT
TCGGCCTCGTCCGAAGGAGGGGCGGTGGGGCCGCCGGGTGCCCCTGACGC
AGTGGCTGCGGCGGCATTGGGGGCAGCAGCGAAGGCGGAGGCCGCGGCGA
TAGCTGTGGCAGCGGCGCAGGCGGCGATGGCG
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Coding sequence (CDS) from alignment at S-ischiensis_contig88:317481..318112+

>mRNA_S-ischiensis_contig88.20310.1 ID=mRNA_S-ischiensis_contig88.20310.1|Name=mRNA_S-ischiensis_contig88.20310.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1206bp|location=Sequence derived from alignment at S-ischiensis_contig88:317481..318112+ (Schizocladia ischiensis KU_0333)
ATGGTGAGGGCCGTGGTGCCGCCGCCGGGCGGGAAGTGGTTGGCCCTCCC
TGTTGTTCAACCCCACCCCCCGCCCGTCCACCGCGGTTGGGCCGCGAGAG
CCGTGACGACATGTGCGCCCCCCGCGGGAAAGGGCAGCAGCACACGCAGA
CGGCCCCCTCTGCACTGGCGCACCGCTCTACACACACACTCTGCCGCCGC
CCCCGAGGGCGACGGGGACGGGAGCGGAGAGAGTGGCTACGGCGGCGGCA
CGATGGCGCCCCCGCGCGGGCGCACCGCCGCTCACCCACAGTCGGCGGCG
GCTGCGTCTCTGCGTGGTGTGAGCGCCGACCCCTGCACGCCTCGCGCCAC
TCCTGGCGAAGAAGATGAGCAAGAGAGGCAGGGGCAGCGTCAGGGGCACG
ATCGGGGCCGCGGGACCCCGGCAGCGGTGGCGGCGGGTCACAATCTCCCG
ATGCCGCCGCCTCCCCTCGATTCGGCCTCGTCCGAAGGAGGGGCGGTGGG
GCCGCCGGGTGCCCCTGACGCAGTGGCTGCGGCGGCATTGGGGGCAGCAG
CGAAGGCGGAGGCCGCGGCGATAGCTGTGGCAGCGGCGCAGGCGGCGATG
GCGATGGTGAGGGCCGTGGTGCCGCCGCCGGGCGGGAAGTGGTTGGCCCT
CCCTGTTGTTCAACCCCACCCCCCGCCCGTCCACCGCGGTTGGGCCGCGA
GAGCCGTGACGACATGTGCGCCCCCCGCGGGAAAGGGCAGCAGCACACGC
AGACGGCCCCCTCTGCACTGGCGCACCGCTCTACACACACACTCTGCCGC
CGCCCCCGAGGGCGACGGGGACGGGAGCGGAGAGAGTGGCTACGGCGGCG
GCACGATGGCGCCCCCGCGCGGGCGCACCGCCGCTCACCCACAGTCGGCG
GCGGCTGCGTCTCTGCGTGGTGTGAGCGCCGACCCCTGCACGCCTCGCGC
CACTCCTGGCGAAGAAGATGAGCAAGAGAGGCAGGGGCAGCGTCAGGGGC
ACGATCGGGGCCGCGGGACCCCGGCAGCGGTGGCGGCGGGTCACAATCTC
CCGATGCCGCCGCCTCCCCTCGATTCGGCCTCGTCCGAAGGAGGGGCGGT
GGGGCCGCCGGGTGCCCCTGACGCAGTGGCTGCGGCGGCATTGGGGGCAG
CAGCGAAGGCGGAGGCCGCGGCGATAGCTGTGGCAGCGGCGCAGGCGGCG
ATGGCG
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