mRNA_S-ischiensis_contig88.20301.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig88.20301.1
Unique NamemRNA_S-ischiensis_contig88.20301.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig88.20301.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig88contigS-ischiensis_contig88:189635..191728 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size337
Cds size336
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig88.20301.1prot_S-ischiensis_contig88.20301.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig88 189635..191727 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817355.4934573-CDS-S-ischiensis_contig88:189634..1896741622817355.4934573-CDS-S-ischiensis_contig88:189634..189674Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 189635..189674 +
1695741051.8664272-CDS-S-ischiensis_contig88:189634..1896741695741051.8664272-CDS-S-ischiensis_contig88:189634..189674Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 189635..189674 +
1622817355.506402-CDS-S-ischiensis_contig88:190194..1903481622817355.506402-CDS-S-ischiensis_contig88:190194..190348Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 190195..190348 +
1695741051.8839934-CDS-S-ischiensis_contig88:190194..1903481695741051.8839934-CDS-S-ischiensis_contig88:190194..190348Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 190195..190348 +
1622817355.5194678-CDS-S-ischiensis_contig88:191585..1917271622817355.5194678-CDS-S-ischiensis_contig88:191585..191727Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 191586..191727 +
1695741051.8951201-CDS-S-ischiensis_contig88:191585..1917271695741051.8951201-CDS-S-ischiensis_contig88:191585..191727Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 191586..191727 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig88.20301.1

>prot_S-ischiensis_contig88.20301.1 ID=prot_S-ischiensis_contig88.20301.1|Name=mRNA_S-ischiensis_contig88.20301.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=112bp
VEGLVFWFRECVSGPALASPTVARAAVAAAMVATGMVRAGCPGFNPLSPV
HRLLYHLLGVDARTRRVAALAAERRRRLLWPKAANASASATAQQPAALAR
GRDDSSSASSAA
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mRNA from alignment at S-ischiensis_contig88:189635..191728+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig88.20301.1 ID=mRNA_S-ischiensis_contig88.20301.1|Name=mRNA_S-ischiensis_contig88.20301.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2094bp|location=Sequence derived from alignment at S-ischiensis_contig88:189635..191728+ (Schizocladia ischiensis KU_0333)
GTTGAGGGCTTGGTCTTCTGGTTCCGAGAGTGTGTGTCCGGTGAGCGCGC
TGGGAGGGGGGGCTTGGAGTGGAGAGGATTTGTCGTGCGGTCTTGGTCGT
GCGTGCGTTGCTGTGTTTTTGCTCTGTTCGGTGCGGGGTGTGCCCTTGTC
CCTGTATAGTTATGTCGGAAGTTTGGGTGTACCCTCAGACGATAAGCTTG
ATGTAATCGTCGGAGAGATCTTGCCCCGCCATTCCAATTTCAAAGACAAC
TTTTCTCGCCGAATACTGGCCGGATCGTGCAGGAAAGCTCGGAAAATCTC
CCTCAGGACCTGGGGGACCTTTTCTGACAGTTTTCGGGACAATTCAGGAC
CTTCCCGGCTAGAAATATTCCCCCGAAAATTGTCCCATGGGGGCAAAATC
TCTCCGACGATTACGGTGCGTGGTACATACAGTACTGTGCCCGGGCGCAC
ATAGAGTGAGCGCACATACCGTATTAGTTAACGCAGCTGCCCCGCCCTTG
CCCCAACACCCGTGCACAACGACGATGACGACGATGACGACCACACCAAA
AAAAATGTAGGGCCGGCGTTGGCGTCGCCCACGGTCGCGCGTGCGGCGGT
GGCGGCCGCCATGGTGGCGACGGGCATGGTCCGCGCGGGGTGCCCGGGCT
TCAACCCCCTCTCCCCCGTGCACCGCCTCCTCTACCATCTGCTCGGCGTG
GACGCCCGCACAAGGTGAGGGAACCGCAGAAGTTGGTGGAGTCTGATCCA
TATTTATCGACAGTACTGATCCATAAATCCATCGATACAGTAGTCGATAT
TCGATAGTTTGGCCCACAGCAATCCAAGTAGACAGTAACGCCACCCACAA
AATCACTCTAGCCCGATAACTATCTACTGGTCGATAGAACATCACTGCTG
GAGGGAAGGGAACCGCAGAAGTTGGTGAGTGAGCTTGCTGGCCATGAGGC
AGGCTGTGTTGTTGCCTCAGTGTGGGTGGACCGGTAGTTTTCTGCGAGAA
GAGTTGAGTAAGTGCTTGTGAAGTACCGTAGTTACATGGTCCAAAGCACT
TGAAGTGACACGTTAGGACTGGGCGATGCTGGTCGGTTCAGCAGTCGAGT
GCGGTTGTGGTGTACTTCGTCCTCTACAGCCGGCTAGCATGAAGCGTGCA
TGCATAAGCCCGCGATGCGAACGTAAGGTGCATGCATGGAGTGTGAGTAC
ATTGCACTGGTATGTACCACATACTTCCGTAGTATGTATAACGTACGGTG
CATGCGTGAAGTGTGAGTACATTGCACTGGTATGTCGATTGCTACGAGTG
AACACATAACATGGACAACTTTCTACTGGGAGTACGTATAACGTAAGGTG
CATGCGTGAAGTGTGCGTACATTGCACTGATATGTCGATTGCTACGAGTG
AACACATAGCATGGACAACTTTCTACTGGGAGTATACTCTGCAGTAGTGT
AGTGGTCCACCCCCCCCCCCCACCACCACCGCCGCCGCCGCCGCCACCGT
TGAAACCTCTGCCAACACCACCACCACCACCACTGTCACCGCCGAATATC
ACCACCACCGCCACACACTGCCGCTAACACTGCCGCCGCCCGCCGCTGCC
GCCACCGCCACCACCGCCACCCCCCAGCAGCGATGGAATATCCAAGCAAA
TCAACCTAATTATCGACAGTGCTGATCTACGCGTATGTATCTATCGATAG
TCGATATTCGATAGTTTGACCCGACACTACATAAAATCCACGTACTTGGA
AGTAGTTAGTAACGCCACCCGCAATACTGGTCGGGCCCGATAGTTATCTC
CTGATTGATATTCCATCACTGCCCCCTGTCCCATTAGGGTCACCCCTGTG
ATGTTGATGTGATGTGATGTGATGTGATGTCGAACTACATTAAATTAGAG
TGCACATCACATCACATCATTGCTGATCGATATTCCATCACTGCGCCCCA
GGAGGGTTGCGGCGCTGGCCGCCGAACGCCGCCGTCGCCTTCTGTGGCCC
AAGGCGGCAAACGCCTCTGCCTCCGCCACAGCACAACAACCGGCAGCCTT
AGCTCGCGGCCGGGATGATTCTTCCTCCGCGTCCTCCGCCGCCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig88:189635..191728+

>mRNA_S-ischiensis_contig88.20301.1 ID=mRNA_S-ischiensis_contig88.20301.1|Name=mRNA_S-ischiensis_contig88.20301.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=672bp|location=Sequence derived from alignment at S-ischiensis_contig88:189635..191728+ (Schizocladia ischiensis KU_0333)
GTTGAGGGCTTGGTCTTCTGGTTCCGAGAGTGTGTGTCCGGTTGAGGGCT
TGGTCTTCTGGTTCCGAGAGTGTGTGTCCGGGCCGGCGTTGGCGTCGCCC
ACGGTCGCGCGTGCGGCGGTGGCGGCCGCCATGGTGGCGACGGGCATGGT
CCGCGCGGGGTGCCCGGGCTTCAACCCCCTCTCCCCCGTGCACCGCCTCC
TCTACCATCTGCTCGGCGTGGACGCCCGCACAAGGGCCGGCGTTGGCGTC
GCCCACGGTCGCGCGTGCGGCGGTGGCGGCCGCCATGGTGGCGACGGGCA
TGGTCCGCGCGGGGTGCCCGGGCTTCAACCCCCTCTCCCCCGTGCACCGC
CTCCTCTACCATCTGCTCGGCGTGGACGCCCGCACAAGGAGGGTTGCGGC
GCTGGCCGCCGAACGCCGCCGTCGCCTTCTGTGGCCCAAGGCGGCAAACG
CCTCTGCCTCCGCCACAGCACAACAACCGGCAGCCTTAGCTCGCGGCCGG
GATGATTCTTCCTCCGCGTCCTCCGCCGCCGAGGGTTGCGGCGCTGGCCG
CCGAACGCCGCCGTCGCCTTCTGTGGCCCAAGGCGGCAAACGCCTCTGCC
TCCGCCACAGCACAACAACCGGCAGCCTTAGCTCGCGGCCGGGATGATTC
TTCCTCCGCGTCCTCCGCCGCC
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