mRNA_S-ischiensis_contig88.20300.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig88.20300.1
Unique NamemRNA_S-ischiensis_contig88.20300.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig88.20300.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig88contigS-ischiensis_contig88:183487..189437 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size365
Cds size363
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig88.20300.1prot_S-ischiensis_contig88.20300.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig88 183487..189435 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817355.4338462-CDS-S-ischiensis_contig88:183486..1835611622817355.4338462-CDS-S-ischiensis_contig88:183486..183561Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 183487..183561 +
1695741051.8278615-CDS-S-ischiensis_contig88:183486..1835611695741051.8278615-CDS-S-ischiensis_contig88:183486..183561Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 183487..183561 +
1622817355.4483013-CDS-S-ischiensis_contig88:185862..1859741622817355.4483013-CDS-S-ischiensis_contig88:185862..185974Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 185863..185974 +
1695741051.8395534-CDS-S-ischiensis_contig88:185862..1859741695741051.8395534-CDS-S-ischiensis_contig88:185862..185974Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 185863..185974 +
1622817355.463614-CDS-S-ischiensis_contig88:189259..1894351622817355.463614-CDS-S-ischiensis_contig88:189259..189435Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 189260..189435 +
1695741051.850928-CDS-S-ischiensis_contig88:189259..1894351695741051.850928-CDS-S-ischiensis_contig88:189259..189435Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 189260..189435 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig88.20300.1

>prot_S-ischiensis_contig88.20300.1 ID=prot_S-ischiensis_contig88.20300.1|Name=mRNA_S-ischiensis_contig88.20300.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=121bp
GVGGSAAGGHGGLRRALHGGHMPPQAPDLPDERLRGDRAGGGLVSGQPLS
LPSGSPPPVPPVDPPPHGGPIGGPPRKRHLRRRARRHSRPPTTRKPLPSR
GPGAGGGSRRLWLGPATGPAG
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mRNA from alignment at S-ischiensis_contig88:183487..189437+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig88.20300.1 ID=mRNA_S-ischiensis_contig88.20300.1|Name=mRNA_S-ischiensis_contig88.20300.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=5951bp|location=Sequence derived from alignment at S-ischiensis_contig88:183487..189437+ (Schizocladia ischiensis KU_0333)
GGGGTTGGAGGGAGTGCTGCTGGCGGGCACGGCGGCCTACGGCGGGCTCT
TCATGGTGGACATATGCCTCCGCAGGTGTGTGAACCCCCCCCCCTCTGCC
GCCGCTGCCGCTTCTAGAGTCTGCTCGTGGAGGTGGTTCATATGCATTAT
AACGAGATACAATCGCACGAGGGTGAGATTGAGTGTTCTTGTGTTAGTGG
TTATCCCATATAAGAATTGAGTGTTCTCGTATTATTAGTGGTTATCACAA
TATATACGTACTCACATTGTGCTTGCCGTAGTCCCGAGACCATTGACCAA
GCGCCTCGATCGAAATGGAGCATCTCTACGGTCTGTTCGTGGATTCCCCA
ACCGCGGGTTGGCGAACGGAAACTACCGTACGCGTTGTGGCACAAGAGAC
TTCTCCTCCACTGTTATTCCCTCCCGCCCTCTTCCTTGCTTTTCTTGATT
TTTCTGCTCTGTGTGCCCTGCGAGTGAAGGCGAGTGTAAGGAAGGGCTTC
CGGGGGTGGGGCCCTGAACCCGCGTAAGTAGGGACACCTCTTCTTTCCCG
CTCATTCGTTGTGTCTTCTTGCAAAAACCTGCAGCACACGATAGGTAAAT
ACCGCTAGATTGTGGGTACGCGTTGCAGGATACTTGTATGTACTCTCGTC
GGACAGGGCTGCCATTATTATACTTATTGATTGTTCTACCCCATGTCTTG
TGCCTGCCGCCGAACGCCGGCCCAGTTCGCTCCGTGCTGGACCGGCTATC
AGCTTTTCGGCCATATGCCTCGCATCCCCGTGCCGGGGTCAGGGTTGGCA
CTAAACCCCTAAGTGCTGCCCTTTTGGGCCCTTAATTGGAGGTAGTCAAG
GGTAATTAGACCTAAAATGAAGGTTTACTTGGGCCCTAGGATCTAAGTGC
CAACCCTGGCCAGGACGGAGAGTGCCGGGCTTTCACCTCCTTGGCCAGGC
GTGGGTTTTCACCTCCTTGGCCAGGCGTGGGTTTTCACCTGCTTGGCCAG
GCGTGGGTTTTCACCTCCTTGGCCAGGCGTGGCTATTCACCTGCTTGGCC
AGGCGTGGATTTTCACTGTAACTGCCGTAGTAGCTGCAAAGGCCGTGCTC
GGAGTACTCCCGTGGTAGTGTGGTGATGCAACAGCTCTGTGTCGGTCAAG
GCATGATGTGATGTGATACGATGTGATGCGATGCAATGTGATTTGTCCTC
AAAACTCACAGAATCGACAGGGAAAACACCGAGGCGAGGCGCGGGCCACG
TCACTAAAAGACCTCGACGACGACGGCGGCCCCGCAAAATGACTGGCGTT
TCACGTCACATCACAACACATCGCATCACATCACGTCGTGTCATGTCACA
TCACATCACGTCGCATCAGCGCCCCGCCGTCCCCCCAAGGGATGATTCCC
TGAGCCTCAATGTGATGTGATGTGATGTCAGAACTACAGTCGAGTAGAAT
ACGCATCACATCACATCGCATCAGAAGTAATGCATCGCATCACATCACAT
CACATCACTGTATATGTGATGTGACAGCTCCGCGTCGGTCGAGGCGCGTG
GTCAATCGTCACGGGGCTACTATCCCCGTCGCAACCTCTGCACACGTGTA
TAGTATAGCTGGGATTTCTATGTTACAACACCAACGACCTGGTCGCTCCC
CCTCTCCCCATAATCCCTAGTACGAGATCTCTCAATTCTTTAATGGGAAA
ACCACTACTGTACATAGTACGAGAACACTCAATCCCACACACGTGCAATT
GTACCTCGTTACAATTTATATGAATCATGGGTCAATGGTCTCGGGACTGC
AGCAAGCACCACGTGAGTACACATATGAATCACCCCCTCTCCCCCGCTCT
CTCACCAATCCCCTTCCTCTATCCTTGCCTCACCCCCCCCCCCCCCCCCC
TCCCCCTCGGGCCCTCTCCCCCTCCCTCCCTTCCTTGCCCCCGGCCTGCC
TCCTCCCTCCCTCCCTCCCTCCCTCTGTCACTCCCTGCCTCCTCCCCCCT
CCCCCGTCCCTCCTTCGCTCCCTCCTTCCCTCCCTCCCCCCGTCCCTCGT
CCCCTCCCCCcccccctCCCCCCCTTCCTCCTCGCCCTCTCCTTCCCCCC
ACCCTCCCTTCCACCCTCCTTCCCTCCCTCCCCCTTCGGTCCCTccccCC
CCCTGTCCCCCCCCCAGTGATGGCATATTTACGCAAATCAACCTATTTAT
CGACAGTACTGATCTACTGTATATATCTATCGATAGTCGATATTCGATAG
TTTGACCCACACTAAATCCAAGTACAGCAGTTAGTACCGCCACCCACAAA
ATCAGTCGAGCCCGATAACTATCTACTGATCGATAGAACATCACTGCTGT
CCCCCCCCGCCCCCCCCTCCACGCAGGCCCCCGATCTTCCTGACGAACGA
CTTCGTGGTGACCGTGCTGGTGGCGGCCTGGTGTCTGGTCAACCACTTTC
CCTGCCAAGTGGTTCCCCGCCTCCTGTCCCTCCCGTTGGTGAGTGTATTT
GTTACTTCGAAGTGGTAAATTGTTTTTGTTTTTGATGGCATGCGAGTCCT
GCTAGTTGCTCCGTCTGGACCGAGGCGCGTGGTCAATGGTCTCGGGACTA
CGGCAAGCACAACGTGAGTACATATATGCGAGTCCTGCTCCATCTTGAGT
GAGGCGCGTGGACAACGGTCTCGGGACTGCGGCAAGCACAATGTGAGTAC
ATACATACATATATATATATATATGCGAGTTCCGCCCCCCCCGTCCCAAC
AACCTAAGGTGGGGACCTCACCGGAAGCCCTTCTTTTCTCTCCCTCCCGT
TGGTGAGTATGGTTGTTTCTTACAGTGCAGTTCTCCCAAGATATTTTGCC
TGCAGTACAGTACTGTAGTTTACGAGTACCGAGTACTATTTTTTTCCTCC
GCCGTGGTTCCCCGCCTCCTCTCCCTCCCATTGGTGAGTACTCGTATGGT
TGTCCACTACTCGTAGAGTGCAATTCTTTCCCCAGATATTTTGCCTGCAG
TGCAGTACTGTAGTTAGGAGACTCCATTTCAACATGGCAAAGTAGTTGGG
AGATTCTAAATTGGAATCATATGGCAAAGTGTTGAATGCACGCCTAGTAT
CCGTCTTGGAAGAGCAGGGGGTGCTGGTGGAGAGCCAGGCAGGATTCCGG
CAGGGTAGAAACTGCGTCGATCATATCTGTAAGCTGAGCGCGCTAGTCCA
GGGTCGTAAGCGCAATAACAAGCCTACATACGCCTTTTTCCTTGACATCA
AGAAAGCATATGATACGGTTTGGCGAAATGGGCTTTGGTATAAGCTGTGG
CAGTGTGGGGTTAGGGGTAAGATGTGGCGGATGATCCGCAACCTCACAGA
GTGTACATCGAGCGCGGTGCGACTAGACGGCGAGGTTTCGGAGTTTTTCC
CCATCACCCAAGGGGTCCCACAAGGGGATACTCTGTAGCCTACATTGTTT
TCGGTGTTTATCAACGACATGCCGCAGACCGTGAGGGACTCGCAGCCGGA
AGGCGGTGGAGTGCCCATTCCGGGCCCGCCTGACGGGGCGAACCAGGGAG
TGGTACCAGCCCTCCTTTGTGCCGATGACGGAGTAGACACCGCTATGACC
GGTGACTTTTTGCAAACACAGATCTCCACCATTCGGGAACACACCCTTCG
ATGGCGTCTCCAAGCAAACGCCCACAAATGCGGAGTCGTAGTGTTCAATG
AAGAGCCGAAAGCGCAGCCGCCGCGCACGGAACCTTATCAATGGGGCCCT
GCCACTATCCCCAAGGTTTCTACGTACACGTATCTGGGGGTGGACTTCGA
TAGCTCCTGCAAGTGGGACACACACTGTGCGAAGGTGAGTCGCACGGGCA
GGGCACGGGTGAGGTGATTGTACCGGTTGTTCAAGCATAAATCCGTGACT
ACTAGGCTGACACTGAACATTTTCAAAAGCGTAGTCCGTCCGTCACTGGA
GTACGCAACTGAAGTATGGGAGGGCACTGGAAACCACGCACGCGCCCTCG
AATCTGTTCAGCATAGAGCTGCGAAGTATATGCTTGGCTGTGGCAAGCGC
ACACCCAGTTGTGCTGTCCGAGGGGACGTGGGGTTGGAGACTCTACAATC
CCGCAGAGATTTGAAGAAGTTTTTATGGGGTTACGATCTGCGACATATGG
AAAAACGACCGACTACCAGCCCAGCTGGCGAAGGCCGTATGGCCGTCGAC
ACCGAAGGGCAGGCCCCCTGTAGTCTGGGCGACTCATATGACTATCTGTG
GAAGTCATTAACTATTAACGGAGATACGAGGATACAGAGGCTATGAGGCC
CGCACTGCTTGCCAAGGAATCGCGTCAGGAGTTTGCTGAGGTGATGGAGG
AAGCCGTGCAGCGAAAGGAGCGGGATACATTGCTAGCGGAAGAGGCACAT
TCACTGTATGGTCGGATGATACCGCCGCCCCGGGAGCTGGGTCTCATCAA
ACCGTATCTGCGAGGGCAGCCCGATTACGGAACCTGTCTCATGTTTCTGT
TTAGGTCAGAAACTATACCGGTGCGGGCGGGCAGGTCAGTGGGGGTTTCA
CAGGAGGCCGGGGATCAGACCACCAAGTGCGTGGACTGCCCACCAGACGA
TGAGACAGTTGGTCACGTCATGATGGAGTGCCCCCAAGACAATGCCGCCA
GAGTGGCCCTACACGCAGCGCTCAAAGCCGTCCTCCCGGAAAATATTTAC
AAATGTTTTAGGAACTCAACCCCTCGCCATCAGGTCATCACCCTCCTGGA
TCCATCGGGTGAGACGTCTGGTTGGCCAGAGGCGGGGCAGAGTTGGATAG
AGCGTGCTGTGAAAGCTTTTCTTGTGTCGGTGTGGAGTGCCCGGTTGGAG
CGAGTAGGTACCATAGATGGGTATCTTGGATCTCCCCCCGCCGTGTCCCG
GCACGGCGAGGGAACCCCCGCTCCCGCTAGGCCTAGGTCTAGCCGGGGAG
GCCCCCCCCCCACCCGGACTCTCACGAGTCCGGGATGGGGGGGGTATGGA
CTTGGCCGCCCCTCCACCTCTGGCGGGGGGGTGGCCACCCCCTCCCACCC
TGGCTCTGCCAGGGGAGGGAGGGGTCCTGCTCCGTCTCGCAAGAGGTGCG
GGGTCAATGGTCTCGGGACTACGGCAAGCACCACGTGAGTACATTATGTA
CTCACATCTGGCAGGGCTTGCCCTAGTCCAGGGACCATTGACCAGGCGCC
GCCGATGGCAGAGCAATCTCCCTCCCACGCCCAATATTACGTGTGGGAGG
GAGGGGGCACCCCCCCGATGTGACGTGACGTGGAACTAGTGCGTCTGCCA
GCCCTGCCTCGATGTACTTCTTACCTAGTATTAGCAGGAACAACACAGGG
CAAGGTGCAGGCCCCGTCACTAAATACCTCAACCGTGGCCCTTCCCTATA
GCTCACCAGGGGAAATATGTGGGGAAGGGGAGAAAGGCATTTGTTACTTG
ACATCACCGCACACCAGTCAATCCAACGATGTGATGTGTGATCAACACGT
CCTGTACCCCCACACTTCAAAGCATGCCATCAGGAACAGCACGCCCCGGG
GGGCGAAGCGCAGGCCACGAAGCAGTTTGGCATCACACGGCACGGCGTTT
TCGCATTTTCTTCATTGGTTTGGCCAACTCCCGACTGTCATTGCCGAGAT
GTTGTAGCTTTCGCCACAGGGTCCCATTTACCAGGTTCCGGGACTGTATT
GTAGCACGGGTGAACTACCGAGTGTCGACCAAAATATCGCATTCAATTGA
CCCCCTCAACCCCACCCGGCCAGATCCACCACCCCATGGTGGCCCTATTG
GAGGCCCACCGCGCAAACGCCATCTGCGACGCCGTGCTCGCCGCCACAGC
CGCCCTCCAACAACCAGGAAACCCCTTCCCAGTCGTGGGCCCGGCGCTGG
CGGGGGCAGCCGCCGCCTGTGGCTCGGTCCTGCTACTGGCCCCGCGGGCC
C
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Coding sequence (CDS) from alignment at S-ischiensis_contig88:183487..189437+

>mRNA_S-ischiensis_contig88.20300.1 ID=mRNA_S-ischiensis_contig88.20300.1|Name=mRNA_S-ischiensis_contig88.20300.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=726bp|location=Sequence derived from alignment at S-ischiensis_contig88:183487..189437+ (Schizocladia ischiensis KU_0333)
GGGGTTGGAGGGAGTGCTGCTGGCGGGCACGGCGGCCTACGGCGGGCTCT
TCATGGTGGACATATGCCTCCGCAGGGGGTTGGAGGGAGTGCTGCTGGCG
GGCACGGCGGCCTACGGCGGGCTCTTCATGGTGGACATATGCCTCCGCAG
GCCCCCGATCTTCCTGACGAACGACTTCGTGGTGACCGTGCTGGTGGCGG
CCTGGTGTCTGGTCAACCACTTTCCCTGCCAAGTGGTTCCCCGCCTCCTG
TCCCTCCCGTTGGCCCCCGATCTTCCTGACGAACGACTTCGTGGTGACCG
TGCTGGTGGCGGCCTGGTGTCTGGTCAACCACTTTCCCTGCCAAGTGGTT
CCCCGCCTCCTGTCCCTCCCGTTGATCCACCACCCCATGGTGGCCCTATT
GGAGGCCCACCGCGCAAACGCCATCTGCGACGCCGTGCTCGCCGCCACAG
CCGCCCTCCAACAACCAGGAAACCCCTTCCCAGTCGTGGGCCCGGCGCTG
GCGGGGGCAGCCGCCGCCTGTGGCTCGGTCCTGCTACTGGCCCCGCGGGC
ATCCACCACCCCATGGTGGCCCTATTGGAGGCCCACCGCGCAAACGCCAT
CTGCGACGCCGTGCTCGCCGCCACAGCCGCCCTCCAACAACCAGGAAACC
CCTTCCCAGTCGTGGGCCCGGCGCTGGCGGGGGCAGCCGCCGCCTGTGGC
TCGGTCCTGCTACTGGCCCCGCGGGC
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