mRNA_S-ischiensis_contig88.20294.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig88.20294.1
Unique NamemRNA_S-ischiensis_contig88.20294.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig88.20294.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig88contigS-ischiensis_contig88:103359..105666 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-22_000150.1
Exons3
Model size451
Cds size450
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig88.20294.1prot_S-ischiensis_contig88.20294.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig88 103359..105666 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817355.0871913-CDS-S-ischiensis_contig88:103358..1035111622817355.0871913-CDS-S-ischiensis_contig88:103358..103511Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 103359..103511 -
1695741051.565238-CDS-S-ischiensis_contig88:103358..1035111695741051.565238-CDS-S-ischiensis_contig88:103358..103511Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 103359..103511 -
1622817355.0995233-CDS-S-ischiensis_contig88:103737..1038541622817355.0995233-CDS-S-ischiensis_contig88:103737..103854Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 103738..103854 -
1695741051.577576-CDS-S-ischiensis_contig88:103737..1038541695741051.577576-CDS-S-ischiensis_contig88:103737..103854Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 103738..103854 -
1622817355.1135945-CDS-S-ischiensis_contig88:105486..1056661622817355.1135945-CDS-S-ischiensis_contig88:105486..105666Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 105487..105666 -
1695741051.5863705-CDS-S-ischiensis_contig88:105486..1056661695741051.5863705-CDS-S-ischiensis_contig88:105486..105666Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 105487..105666 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig88.20294.1

>prot_S-ischiensis_contig88.20294.1 ID=prot_S-ischiensis_contig88.20294.1|Name=mRNA_S-ischiensis_contig88.20294.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=150bp
HADGSFDIKYLLGGGETKVHHTYVECVVTDGAAPRERKAPKVLSLEEEEE
AEEKTEGTSSAKRHGGQKKAKSSKKKRKRETSKENGGGDGSGDVANDSKP
KPKKSKAPKVPPLVVGPSKVKNNASAGPAKARKPSSGSKGGTSRAGGGSG
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mRNA from alignment at S-ischiensis_contig88:103359..105666-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig88.20294.1 ID=mRNA_S-ischiensis_contig88.20294.1|Name=mRNA_S-ischiensis_contig88.20294.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2308bp|location=Sequence derived from alignment at S-ischiensis_contig88:103359..105666- (Schizocladia ischiensis KU_0333)
CATGCAGACGGGTCATTCGACATCAAGTACCTTCTGGGGGGTGGCGAGAC
GAAGGTGCATCATACGTATGTCGAGTGCGTGGTGACGGACGGAGCGGCGC
CCCGGGAGCGCAAGGCGCCTAAGGTTCTGAGCCTGGAGGAGGAGGAAGAG
GCGGAGGAAAAGACAGAGGGGACATCCAGCGTGAGTCTTGCTAGCCCTTG
GAGGATGACGGGACACTGATGTGATGCGATGTGATGTATACGCTTATGTA
CTGAAGTGGTGCTTGCCGTAGTCCCGAGACCATTGACCACGCGCCTCGGT
CGAGACGGAGCAGGACCCCTCCCTCCCCTGGCAGAGCACTTCACATCACA
TCATGCTTCCTGTAGTGGTACCATCGTCCGCAGAGTGAGGAGGGTTGGAA
GGGTTTAGGGTTTGGGTTTGTCGGGAGGGAGAGGAAGGTGTTTGGCTTCG
GGGCTAGGGTTTGGAGGAGGAGAAGGAGGAGACTATCAAGCACTTCCAGG
CACTGTACCAAGCACTTCCAAGCACTGCATACTTCCAAGCCCGGCGTCAA
GTACTTCCAAGCACTGTGTCAAGGGCTTCCAAGCACAGCACCGAGCACTT
CCAAGCACTGCATCAAGCACAGTGCTTCCAAGCACTGTGTCAAGTACTTC
CAAGCACTCTACTGAGCACTTCCAAGCACTATCTCAAGTACTTCCAAGCA
CTTGTACCGAGCACTTCCAAGCACATGTCTGCTGAGCAGTATCGAGGGGA
GTGGAAGAGTGGAAGAAGGAGGTTGAGGGAGGGCGGCAGGGAGAAGGAAG
AGCATTGGGGGACCGGGAGAGATGTGTGCCAGTGTCAGTGCCTTGAGGAA
CTATCCTGCTGTACGCACGTACAGCAGGGTTGCAGCAGGGTGAGGGCAGA
GATGACAAAAAAAGACTCGGTGTCAGGCTTCTTCCCGTTTGCGGATGGGC
CTCCCCTGACTCACGCTCACAAAGCTAGTGCGCGACAGTGATGGAATATC
TGAGCAAATCAATCTAGTTGTCGACAGTGCTGATCCATGTATCTATCGAT
AGTCGATGTTCGATAGTTTGACCCGCACTAAATCCCAGTAGTACGCCACC
CACAAACTCAGTGGAGCCCGATAACTATCTACTGATCGATATTCCATCAC
TACGAGTCGCTCATGGGCAAGCAACTACGGAAGTCCATTGAGACCCTCCC
CCCTCCGGTTCTTAGTTCCTTGATGTTACAATCGCTAGTAAACAACACTC
AATTCTTAAATGGGACAACTACTAATACGAGAACAGTCAATCTCCCATCG
TGCATTGTGCCTCGCTACAATTTATTTTGAGTGGTAGAGAAGCAGCGAGT
TCCAGGCCCCGTGCCAGAAGGCCCTCCCCGAAACGGGACTCAACGAAGCC
CTTCTTCCCCTCGCAGGGCACAAAGAAAACAACACTAAAGAAAGAACGGG
GTTTCTGTGAACCATCACCCACTATCATACATACCACCACGGCCAGTGGC
CCCGAGAAGTCGTGGAGAGTTTCCAAGCGAGGGAATACCACTTTCAGGCT
AGGGGGGGGCCTAGGGGGTGCTACTGTACTACTGTACCCCCCTTCAGCAC
GTCTGTAGGCCAGACCACTGTGTTTTTTGCATGGCCGCGCCAAACTGCCT
GTTCTTCGTGTCTGCAGGCGCGCCTGCCCGCACGCACACATGCATGCACA
CACACACGCACACACACAGACACACACACACACACCACACACTTACACAC
GCACACGAATGCATGCACACATGCACAACCCACCCACCACTCCACCCCGA
CCGCCGTGGCAGGCAAAGCGCCATGGCGGGCAGAAAAAGGCCAAGAGTTC
GAAGAAAAAGCGCAAGAGGGAGACAAGCAAGGAGAACGGAGGCGGTGACG
GCAGTGGCGACGTCGCCAACGACAGTAAGGTGAGTGTTGCTGAGGGACCG
GTGACTACCCCCTGCACACCAGGGCGGACGGTTACAATGGACAGTAAAAC
CTGCAAGGATTCAAGTGTGCTTCCACATAGTGTTTTGCCGTGCCCGCAAC
ACGTTTACTCCCGTACCTGCTCCTCACAGTCTTCATCCCCAACCCACCCG
TGTCCCTCCCGCCCCGCCCGCCGCCCCGCCGCTGGTATTGTCCCAATCCT
CCCAGCCCAAGCCGAAGAAATCTAAAGCCCCCAAGGTGCCGCCCCTGGTT
GTGGGCCCTTCCAAGGTCAAGAACAACGCTTCTGCAGGCCCCGCCAAGGC
CCGGAAACCTTCTTCCGGCTCTAAGGGAGGAACGTCTCGGGCTGGGGGGG
GTTCTGGT
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Coding sequence (CDS) from alignment at S-ischiensis_contig88:103359..105666-

>mRNA_S-ischiensis_contig88.20294.1 ID=mRNA_S-ischiensis_contig88.20294.1|Name=mRNA_S-ischiensis_contig88.20294.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=900bp|location=Sequence derived from alignment at S-ischiensis_contig88:103359..105666- (Schizocladia ischiensis KU_0333)
CATGCAGACGGGTCATTCGACATCAAGTACCTTCTGGGGGGTGGCGAGAC
GAAGGTGCATCATACGTATGTCGAGTGCGTGGTGACGGACGGAGCGGCGC
CCCGGGAGCGCAAGGCGCCTAAGGTTCTGAGCCTGGAGGAGGAGGAAGAG
GCGGAGGAAAAGACAGAGGGGACATCCAGCCATGCAGACGGGTCATTCGA
CATCAAGTACCTTCTGGGGGGTGGCGAGACGAAGGTGCATCATACGTATG
TCGAGTGCGTGGTGACGGACGGAGCGGCGCCCCGGGAGCGCAAGGCGCCT
AAGGTTCTGAGCCTGGAGGAGGAGGAAGAGGCGGAGGAAAAGACAGAGGG
GACATCCAGCGCAAAGCGCCATGGCGGGCAGAAAAAGGCCAAGAGTTCGA
AGAAAAAGCGCAAGAGGGAGACAAGCAAGGAGAACGGAGGCGGTGACGGC
AGTGGCGACGTCGCCAACGACAGTAAGGCAAAGCGCCATGGCGGGCAGAA
AAAGGCCAAGAGTTCGAAGAAAAAGCGCAAGAGGGAGACAAGCAAGGAGA
ACGGAGGCGGTGACGGCAGTGGCGACGTCGCCAACGACAGTAAGCCCAAG
CCGAAGAAATCTAAAGCCCCCAAGGTGCCGCCCCTGGTTGTGGGCCCTTC
CAAGGTCAAGAACAACGCTTCTGCAGGCCCCGCCAAGGCCCGGAAACCTT
CTTCCGGCTCTAAGGGAGGAACGTCTCGGGCTGGGGGGGGTTCTGGTCCC
AAGCCGAAGAAATCTAAAGCCCCCAAGGTGCCGCCCCTGGTTGTGGGCCC
TTCCAAGGTCAAGAACAACGCTTCTGCAGGCCCCGCCAAGGCCCGGAAAC
CTTCTTCCGGCTCTAAGGGAGGAACGTCTCGGGCTGGGGGGGGTTCTGGT
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