mRNA_S-ischiensis_contig88.20291.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig88.20291.1
Unique NamemRNA_S-ischiensis_contig88.20291.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig88.20291.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig88contigS-ischiensis_contig88:77976..78623 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size648
Cds size462
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817356.1064408-CDS-S-ischiensis_contig88:77975..784371622817356.1064408-CDS-S-ischiensis_contig88:77975..78437Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 77976..78437 +
1695741052.3432457-CDS-S-ischiensis_contig88:77975..784371695741052.3432457-CDS-S-ischiensis_contig88:77975..78437Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 77976..78437 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817356.1174424-UTR-S-ischiensis_contig88:78437..786231622817356.1174424-UTR-S-ischiensis_contig88:78437..78623Schizocladia ischiensis KU_0333UTRS-ischiensis_contig88 78438..78623 +
1695741052.3572357-UTR-S-ischiensis_contig88:78437..786231695741052.3572357-UTR-S-ischiensis_contig88:78437..78623Schizocladia ischiensis KU_0333UTRS-ischiensis_contig88 78438..78623 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig88.20291.1prot_S-ischiensis_contig88.20291.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig88 77976..78437 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig88.20291.1

>prot_S-ischiensis_contig88.20291.1 ID=prot_S-ischiensis_contig88.20291.1|Name=mRNA_S-ischiensis_contig88.20291.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=154bp
RLPGVGLRARAAEPPNGTAAAAAAAACAVPLSFGVAAPCFAFAAAIPAAP
PPPPPLRLPRSCVVTARAGPGLLRPEDGLVRAPGPLPGRARGVPCRFAGI
SGFAGGSCSKGSAAVPVRREPRPLASASASAAAAWAPGPQHDAAAPSPPA
LRA*
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mRNA from alignment at S-ischiensis_contig88:77976..78623+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig88.20291.1 ID=mRNA_S-ischiensis_contig88.20291.1|Name=mRNA_S-ischiensis_contig88.20291.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=648bp|location=Sequence derived from alignment at S-ischiensis_contig88:77976..78623+ (Schizocladia ischiensis KU_0333)
AGGCTGCCGGGAGTCGGCCTCCGTGCCCGGGCTGCTGAGCCACCTAACGG
TACTGCCGCCGCCGCCGCCGCCGCTGCCTGTGCTGTTCCTCTGTCATTCG
GGGTGGCGGCGCCGTGCTTCGCCTTCGCCGCCGCCATCCCCGCCGCGCCG
CCGCCGCCGCCTCCGCTCAGGCTGCCACGGTCATGCGTAGTAACTGCCCG
GGCCGGCCCGGGCCTCCTCAGGCCTGAGGATGGCCTGGTCAGGGCCCCAG
GCCCCCTCCCGGGCCGGGCCAGGGGAGTACCCTGCCGCTTCGCAGGCATC
TCAGGCTTCGCAGGCGGTAGTTGTTCCAAGGGCAGCGCCGCGGTCCCGGT
CCGGCGAGAACCCCGGCCGCTGGCCTCCGCATCCGCATCCGCTGCCGCCG
CCTGGGCGCCCGGGCCCCAGCACGACGCCGCCGCTCCGAGTCCGCCGGCA
CTCAGGGCTTGAAGAAGCGAGTCCGCCTGTTTCCGTGCATCGGCGGTCTC
CGGCGCGAGCCTGAGGAGGCCGTTGGCGTGTTCCCCCGGCCCGGGGGCAG
CCTGAGTCATCCGGGTGGCCCGGGCGCCCCCTGCCGACGAAGCCGTCAGG
CTCGAGCCGGGCCCCGCCGCACATTGAGCCACCTCGGAGGACGATATA
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Coding sequence (CDS) from alignment at S-ischiensis_contig88:77976..78623+

>mRNA_S-ischiensis_contig88.20291.1 ID=mRNA_S-ischiensis_contig88.20291.1|Name=mRNA_S-ischiensis_contig88.20291.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=924bp|location=Sequence derived from alignment at S-ischiensis_contig88:77976..78623+ (Schizocladia ischiensis KU_0333)
AGGCTGCCGGGAGTCGGCCTCCGTGCCCGGGCTGCTGAGCCACCTAACGG
TACTGCCGCCGCCGCCGCCGCCGCTGCCTGTGCTGTTCCTCTGTCATTCG
GGGTGGCGGCGCCGTGCTTCGCCTTCGCCGCCGCCATCCCCGCCGCGCCG
CCGCCGCCGCCTCCGCTCAGGCTGCCACGGTCATGCGTAGTAACTGCCCG
GGCCGGCCCGGGCCTCCTCAGGCCTGAGGATGGCCTGGTCAGGGCCCCAG
GCCCCCTCCCGGGCCGGGCCAGGGGAGTACCCTGCCGCTTCGCAGGCATC
TCAGGCTTCGCAGGCGGTAGTTGTTCCAAGGGCAGCGCCGCGGTCCCGGT
CCGGCGAGAACCCCGGCCGCTGGCCTCCGCATCCGCATCCGCTGCCGCCG
CCTGGGCGCCCGGGCCCCAGCACGACGCCGCCGCTCCGAGTCCGCCGGCA
CTCAGGGCTTGAAGGCTGCCGGGAGTCGGCCTCCGTGCCCGGGCTGCTGA
GCCACCTAACGGTACTGCCGCCGCCGCCGCCGCCGCTGCCTGTGCTGTTC
CTCTGTCATTCGGGGTGGCGGCGCCGTGCTTCGCCTTCGCCGCCGCCATC
CCCGCCGCGCCGCCGCCGCCGCCTCCGCTCAGGCTGCCACGGTCATGCGT
AGTAACTGCCCGGGCCGGCCCGGGCCTCCTCAGGCCTGAGGATGGCCTGG
TCAGGGCCCCAGGCCCCCTCCCGGGCCGGGCCAGGGGAGTACCCTGCCGC
TTCGCAGGCATCTCAGGCTTCGCAGGCGGTAGTTGTTCCAAGGGCAGCGC
CGCGGTCCCGGTCCGGCGAGAACCCCGGCCGCTGGCCTCCGCATCCGCAT
CCGCTGCCGCCGCCTGGGCGCCCGGGCCCCAGCACGACGCCGCCGCTCCG
AGTCCGCCGGCACTCAGGGCTTGA
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