mRNA_S-ischiensis_contig87.20283.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig87.20283.1
Unique NamemRNA_S-ischiensis_contig87.20283.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig87.20283.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig87contigS-ischiensis_contig87:494857..497137 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size966
Cds size963
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817350.436857-CDS-S-ischiensis_contig87:494856..4956081622817350.436857-CDS-S-ischiensis_contig87:494856..495608Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 494857..495608 +
1695741047.8921099-CDS-S-ischiensis_contig87:494856..4956081695741047.8921099-CDS-S-ischiensis_contig87:494856..495608Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 494857..495608 +
1622817350.4479754-CDS-S-ischiensis_contig87:496924..4971351622817350.4479754-CDS-S-ischiensis_contig87:496924..497135Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 496925..497135 +
1695741047.902962-CDS-S-ischiensis_contig87:496924..4971351695741047.902962-CDS-S-ischiensis_contig87:496924..497135Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 496925..497135 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig87.20283.1prot_S-ischiensis_contig87.20283.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig87 494857..497135 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig87.20283.1

>prot_S-ischiensis_contig87.20283.1 ID=prot_S-ischiensis_contig87.20283.1|Name=mRNA_S-ischiensis_contig87.20283.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=321bp
VLVRSCCRPRKTTPQNTHAHSWYDRNPFKMETLGTSGLRDEEKRSVLCVR
PGVRYAHLLCTRTYPTSTRARSGGCPRREQARCCGLDTTMESPEVPDNMI
YPSKAAWASVSSVGGCAACCMRLWGCRNAAVFTCSEADLRRALDTRLIEE
GAETEARSFTSECPLCLGVLQGRVPLRAANSSAGLSGEAGSAEPEQSSEG
RGSLAEQAVAIIRATGYDVTDFCVNVSVPGCLAVRQRAFVLVNECHFLAQ
TDDTAATSVKEALKLHLGAGIRVALGGAAWAPETSDLSLHVHFTHPAADA
EAEGLLNIPSATGPAPRMPTP
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mRNA from alignment at S-ischiensis_contig87:494857..497137+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig87.20283.1 ID=mRNA_S-ischiensis_contig87.20283.1|Name=mRNA_S-ischiensis_contig87.20283.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2281bp|location=Sequence derived from alignment at S-ischiensis_contig87:494857..497137+ (Schizocladia ischiensis KU_0333)
GTACTTGTCCGTTCTTGCTGTCGCCCCCGGAAGACAACCCCCCAAAACAC
ACACGCCCATTCGTGGTATGATAGAAACCCGTTCAAGATGGAGACGCTTG
GGACGAGCGGTCTCAGGGACGAAGAAAAGCGCTCAGTCCTCTGCGTCAGA
CCAGGTGTGAGATACGCCCACCTGCTCTGTACACGAACCTATCCCACATC
AACCAGAGCACGTAGCGGCGGCTGCCCCCGACGCGAGCAAGCACGCTGCT
GCGGCCTCGACACCACCATGGAGAGCCCAGAGGTTCCCGACAACATGATT
TATCCTTCAAAGGCTGCCTGGGCTTCCGTTTCCTCGGTCGGTGGGTGTGC
CGCTTGCTGCATGCGCCTCTGGGGATGCAGGAACGCGGCCGTGTTCACCT
GCTCGGAGGCCGATTTGCGCCGGGCGCTCGACACCCGCCTGATTGAGGAA
GGTGCCGAAACGGAGGCGCGAAGTTTCACGAGCGAATGCCCTCTTTGTCT
CGGAGTTCTGCAAGGAAGGGTGCCGCTGCGAGCGGCGAACAGCTCGGCAG
GCCTGTCCGGCGAGGCTGGTTCAGCTGAGCCAGAGCAGTCCAGCGAGGGC
AGGGGAAGCCTCGCGGAGCAGGCGGTGGCGATCATAAGGGCGACGGGCTA
CGATGTGACTGACTTCTGCGTCAATGTGTCGGTCCCTGGGTGTCTGGCCG
TCAGGCAGCGGGCCTTCGTTCTCGTGAACGAGTGCCACTTCCTGGCACAA
ACGTGAGTCATGGTGGTGGTGGTGATGGTGGTGAGGGTAGCGGCGGTGGC
GGCGATGGATGACAATTTTTGAAGTGACGGCAGCGACAGCGGCGTTGACA
GTGGTTCTTGTTCGTGGTGGTGGCCGTCGTGGTGCTGTGTAGTGGCAGTG
GTGGCGGTGGTGGAGGTGGCGGTGATTCTATAAATTGTAACGATGTACAA
TCGCACGTGTGTACAATCGCATGTGTGTGCGATTGACTGTTCTCGCATTA
GTATTTGTTTCGTTTGAGAATTGAATGTTGTTATTATTATTATTATTTAT
TTTTTGTGGTGGACGTGGCGGCGGAGGTGGTGGTGTTGGTAATTTGATAG
CATTAGTACGTACCATTCAATGGTGGGGGTGGTCGTGGTTGTAGTGCTGG
TGGGGGTTGGTAGGCGTAACTTGGGCATGGTCAATGGGGGTGGCGTGGTG
CTTGTGGTGTTGCTGCTGGTGGGCGTGAACAGTGAGGGCTCAACGTTTCG
TTCGACCATGCCAGGCCATCCCAGTGCAGAGAATGAGGCCCCACCCCGAT
GAACGCCTTCCACGTCCCGCCCCAGGTGTGAGGGACTCCCTACCGGCCCT
CCCCCGCACGCGCTTGTCTGCGCCAAAACCCGCCTGTCGCAGTAAAAATA
CGCCTGTCTGTCACCCTCTTGATGCGGAGACAGACTGAGGTGCCGGCGCC
GCGATACAGTCTGTGCTTTCCGTGGCTGAGAGCCCGTTTCGACACCGCGG
TGTGTAAAGCACGAAGCACCCTCTCGTATACAAGCACTCTCCGGGCGAGG
GACACTCCAAAGCAGGCCTTTTTTTTTTCTTATTCTTCTTCTTCATTTTC
TCCCGCGGGCTGCCTGCCTTTGGGCCCAAACCCGACACCTGCCGGTCCCC
GCCCTCCGGACAAAGAATGGAAACGCTGCCCAGCCAATTCTTCCCAAGAA
CGGAGACGGTGAAACAAGCCGTGCTCCATGACGAGGCCGCAGGTCTCCCC
GATGGGACTGTCAATCCAATACAACCTGTAGTATCTATGGACAAGTGCCT
CAGCGGTACCAACCCACATCACTGCCCCCCTCCCCCTCCCTGCCGTTCTC
CTCCCCTCCTTCCCTGCCTCCCCGCCCATTCCCTTCCCTCCCGTCTCCCT
CCCTCTCCCCCCCCTTCCCTCTTCCCTTCCCTGCCCCTCCCCTCCCCTCC
CGTGCCCTCTCTCCCTCGCTGCCTTGCCGTATCCCTCGCCTACCGCCCTC
GTCTCTCCCTCCCTCCCTTCCCCTCCCCCAACCCGTCCCCCCCCCCCCCC
CCGGCACTCGCCCCCCAGCGATGACACCGCCGCCACCAGCGTCAAGGAGG
CCCTCAAGCTCCACCTGGGCGCCGGGATCCGGGTCGCCTTGGGAGGCGCC
GCCTGGGCCCCAGAGACCAGCGACCTTTCCCTGCATGTCCACTTCACACA
CCCTGCCGCAGACGCCGAGGCAGAGGGCCTCCTCAACATACCGTCGGCCA
CTGGTCCCGCGCCGCGGATGCCGACGCCCGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig87:494857..497137+

>mRNA_S-ischiensis_contig87.20283.1 ID=mRNA_S-ischiensis_contig87.20283.1|Name=mRNA_S-ischiensis_contig87.20283.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1926bp|location=Sequence derived from alignment at S-ischiensis_contig87:494857..497137+ (Schizocladia ischiensis KU_0333)
GTACTTGTCCGTTCTTGCTGTCGCCCCCGGAAGACAACCCCCCAAAACAC
ACACGCCCATTCGTGGTATGATAGAAACCCGTTCAAGATGGAGACGCTTG
GGACGAGCGGTCTCAGGGACGAAGAAAAGCGCTCAGTCCTCTGCGTCAGA
CCAGGTGTGAGATACGCCCACCTGCTCTGTACACGAACCTATCCCACATC
AACCAGAGCACGTAGCGGCGGCTGCCCCCGACGCGAGCAAGCACGCTGCT
GCGGCCTCGACACCACCATGGAGAGCCCAGAGGTTCCCGACAACATGATT
TATCCTTCAAAGGCTGCCTGGGCTTCCGTTTCCTCGGTCGGTGGGTGTGC
CGCTTGCTGCATGCGCCTCTGGGGATGCAGGAACGCGGCCGTGTTCACCT
GCTCGGAGGCCGATTTGCGCCGGGCGCTCGACACCCGCCTGATTGAGGAA
GGTGCCGAAACGGAGGCGCGAAGTTTCACGAGCGAATGCCCTCTTTGTCT
CGGAGTTCTGCAAGGAAGGGTGCCGCTGCGAGCGGCGAACAGCTCGGCAG
GCCTGTCCGGCGAGGCTGGTTCAGCTGAGCCAGAGCAGTCCAGCGAGGGC
AGGGGAAGCCTCGCGGAGCAGGCGGTGGCGATCATAAGGGCGACGGGCTA
CGATGTGACTGACTTCTGCGTCAATGTGTCGGTCCCTGGGTGTCTGGCCG
TCAGGCAGCGGGCCTTCGTTCTCGTGAACGAGTGCCACTTCCTGGCACAA
ACGTACTTGTCCGTTCTTGCTGTCGCCCCCGGAAGACAACCCCCCAAAAC
ACACACGCCCATTCGTGGTATGATAGAAACCCGTTCAAGATGGAGACGCT
TGGGACGAGCGGTCTCAGGGACGAAGAAAAGCGCTCAGTCCTCTGCGTCA
GACCAGGTGTGAGATACGCCCACCTGCTCTGTACACGAACCTATCCCACA
TCAACCAGAGCACGTAGCGGCGGCTGCCCCCGACGCGAGCAAGCACGCTG
CTGCGGCCTCGACACCACCATGGAGAGCCCAGAGGTTCCCGACAACATGA
TTTATCCTTCAAAGGCTGCCTGGGCTTCCGTTTCCTCGGTCGGTGGGTGT
GCCGCTTGCTGCATGCGCCTCTGGGGATGCAGGAACGCGGCCGTGTTCAC
CTGCTCGGAGGCCGATTTGCGCCGGGCGCTCGACACCCGCCTGATTGAGG
AAGGTGCCGAAACGGAGGCGCGAAGTTTCACGAGCGAATGCCCTCTTTGT
CTCGGAGTTCTGCAAGGAAGGGTGCCGCTGCGAGCGGCGAACAGCTCGGC
AGGCCTGTCCGGCGAGGCTGGTTCAGCTGAGCCAGAGCAGTCCAGCGAGG
GCAGGGGAAGCCTCGCGGAGCAGGCGGTGGCGATCATAAGGGCGACGGGC
TACGATGTGACTGACTTCTGCGTCAATGTGTCGGTCCCTGGGTGTCTGGC
CGTCAGGCAGCGGGCCTTCGTTCTCGTGAACGAGTGCCACTTCCTGGCAC
AAACCGATGACACCGCCGCCACCAGCGTCAAGGAGGCCCTCAAGCTCCAC
CTGGGCGCCGGGATCCGGGTCGCCTTGGGAGGCGCCGCCTGGGCCCCAGA
GACCAGCGACCTTTCCCTGCATGTCCACTTCACACACCCTGCCGCAGACG
CCGAGGCAGAGGGCCTCCTCAACATACCGTCGGCCACTGGTCCCGCGCCG
CGGATGCCGACGCCCCGATGACACCGCCGCCACCAGCGTCAAGGAGGCCC
TCAAGCTCCACCTGGGCGCCGGGATCCGGGTCGCCTTGGGAGGCGCCGCC
TGGGCCCCAGAGACCAGCGACCTTTCCCTGCATGTCCACTTCACACACCC
TGCCGCAGACGCCGAGGCAGAGGGCCTCCTCAACATACCGTCGGCCACTG
GTCCCGCGCCGCGGATGCCGACGCCC
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