mRNA_S-ischiensis_contig87.20274.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig87.20274.1
Unique NamemRNA_S-ischiensis_contig87.20274.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig87.20274.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig87contigS-ischiensis_contig87:446735..451172 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score71.2
Seed ortholog evalue7.6e-10
Seed eggNOG ortholog2880.D8LRB0
KEGG koko:K10407,ko:K19360
KEGG Pathwayko05132,map05132
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko03036,ko04812
Hectar predicted targeting categoryother localisation
Exons7
Model size765
Cds size762
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817354.2651074-CDS-S-ischiensis_contig87:446735..4468611622817354.2651074-CDS-S-ischiensis_contig87:446735..446861Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 446736..446861 -
1695741050.987242-CDS-S-ischiensis_contig87:446735..4468611695741050.987242-CDS-S-ischiensis_contig87:446735..446861Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 446736..446861 -
1622817354.27696-CDS-S-ischiensis_contig87:447440..4475391622817354.27696-CDS-S-ischiensis_contig87:447440..447539Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 447441..447539 -
1695741051.0077596-CDS-S-ischiensis_contig87:447440..4475391695741051.0077596-CDS-S-ischiensis_contig87:447440..447539Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 447441..447539 -
1622817354.2889383-CDS-S-ischiensis_contig87:448838..4489761622817354.2889383-CDS-S-ischiensis_contig87:448838..448976Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 448839..448976 -
1695741051.029172-CDS-S-ischiensis_contig87:448838..4489761695741051.029172-CDS-S-ischiensis_contig87:448838..448976Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 448839..448976 -
1622817354.304001-CDS-S-ischiensis_contig87:449717..4497821622817354.304001-CDS-S-ischiensis_contig87:449717..449782Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 449718..449782 -
1695741051.044997-CDS-S-ischiensis_contig87:449717..4497821695741051.044997-CDS-S-ischiensis_contig87:449717..449782Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 449718..449782 -
1622817354.317894-CDS-S-ischiensis_contig87:450082..4502171622817354.317894-CDS-S-ischiensis_contig87:450082..450217Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 450083..450217 -
1695741051.0585918-CDS-S-ischiensis_contig87:450082..4502171695741051.0585918-CDS-S-ischiensis_contig87:450082..450217Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 450083..450217 -
1622817354.3309367-CDS-S-ischiensis_contig87:450723..4508471622817354.3309367-CDS-S-ischiensis_contig87:450723..450847Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 450724..450847 -
1695741051.0678372-CDS-S-ischiensis_contig87:450723..4508471695741051.0678372-CDS-S-ischiensis_contig87:450723..450847Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 450724..450847 -
1622817354.3452802-CDS-S-ischiensis_contig87:451097..4511721622817354.3452802-CDS-S-ischiensis_contig87:451097..451172Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 451098..451172 -
1695741051.0778222-CDS-S-ischiensis_contig87:451097..4511721695741051.0778222-CDS-S-ischiensis_contig87:451097..451172Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 451098..451172 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig87.20274.1prot_S-ischiensis_contig87.20274.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig87 446736..451172 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig87.20274.1

>prot_S-ischiensis_contig87.20274.1 ID=prot_S-ischiensis_contig87.20274.1|Name=mRNA_S-ischiensis_contig87.20274.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=254bp
RVGPHVDRHLVALREDRRVVFAATKVCLDALPAREHEKYLRLAVLPTHTI
APDLMLEALWDISSPAGGGGKEQQQEQEQQQEQQEHMDVGSTLDSLLALR
LVQPMRLCCSHGGCDGGGDDEDRAWGPRRGVPKGYWRWGCQPSSSGTVPD
GFIRWKAFASPGTLERAVSNQVLFLGRLKVLKGALAPAWRSARDRFKYVA
AGRCDLLSCWRQVEAEAAKLKLARAAAVAQQEPRPGAGAGERTSERWAAG
EAGG
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mRNA from alignment at S-ischiensis_contig87:446735..451172-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig87.20274.1 ID=mRNA_S-ischiensis_contig87.20274.1|Name=mRNA_S-ischiensis_contig87.20274.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4438bp|location=Sequence derived from alignment at S-ischiensis_contig87:446735..451172- (Schizocladia ischiensis KU_0333)
AGGGTTGGCCCGCATGTGGACCGCCACCTGGTGGCCCTCCGGGAGGACCG
GCGGGTGGTCTTCGCCGCCACCAAGGTGAGGGTGTGGATATGGTTTCTGG
CACTGTACTCGTACTGTGTACTGTACAAATCGTGTGATTGGGCTACTCTA
CTGCACTGTACAGATTGTGCTACACTCTGCTGTACTAACTACTGCTTGAA
GTAGCACGTAGTTTTGTGTGGTACTTTGAAGTATATATACAAAGTAATCG
TACTACTGTACAGTACAAGGGGGAGGACACTGGTGTCCCAACGGCAAACC
GCTTGCCCCACCCCACCCCATGCAGGTGTGCCTGGATGCCCTGCCCGCCC
GCGAGCACGAGAAGTACCTCCGCCTGGCCGTGCTGCCTACCCATACCATA
GCGCCGGACCTCATGTTGGAGGCACTGTGGGACATTTCGTCGCCCGCCGG
TGAGTGCAGTATATATGCTTCCAAGTATAGATGTGTGTACTCACGCCGTA
CTGTACTTGCCATAGTCCCCAGACAGCTCGTTGCAAAGCGTTCAAGTAGT
TAAGGAGGAGGAGTTTGACAACGCCCAAGTAGTTTGGAGGCTTCATTTCA
CAAAGGTCCATGTACTCGCACGAGTAGTTGGGAGGCGAGTAAGGCGAGTG
AAAGAAGGGCTTCGTGCAAGTATTGACACCTCTTCTTCCCGCTCGCTTGT
TTATGTTCTTGCAAGAACCAGGAACAAGTAGTGACTGCTGAGCCCAACGC
CAAGCGGCCGCACTCTGGGGATCCTGACCGCAAAAAAGCAACCCCCCGGC
CTGTCCCTACCGAGGCAGAACACAACCACACTTTCTGCAAAGAACCCCCG
ACCTCCCCTATCATCAGCGTGAAACAGAATAAAGAGCAATCACGAGTACT
CTGTGGAGAAACGGCCCAATGCTCGGGGTGTGTGTGAACTCTCTGTGGTC
AATAGGCGGCGGGGGGAAAGAGCAGCAGCAGGAGCAGGAGCAGCAGCAGG
AGCAGCAGGAGCACATGGATGTGGGCTCGACCCTGGACAGCCTCTTGGCG
CTAAGGCTGGTGCAGCCCATGAGGCTGTGCTGCAGCCACGGTGAGCTTTC
CCCCTTGGGAGATGAGGGTACACTGCGTGCCATGTGATGCGATGTGCGTG
ACGTCACGTCACTTTCCCGCTGTGCAGAAGTAGGGGACTGCGATGCGATG
TGGTGTGAAACTGCTGCACGTCATAATACGCATCACAAACCATCACATCT
CATTGCATCATATCGCACCAGATGACAGTACATGATGTCTCTCTGGCGCG
ATTCACGAAGTTCCCTCATATGCAGGGTTCACGCATCCCCCCCTCTCTCT
CGCGCACACACACATACACACACACAATCTCAATCTCAAGGTGGCTGCGA
CGGCGGTGGCGATGACGAGGACCGCGCATGGGGACCACGCCGAGGGGTAC
CAAAGGTGAGCAAGGAGTGTCTTACGCGTATGTTACGTACTCTTTACTAC
AGTAGGGGCCACAGTGGTTTCGCCTGACTGTAGTTTTTCCTCTCGGCACG
GTGAGCGCAATCGTAGCCATTTGCCCTCAGCATGCGACACAGTTAGTTTG
ATGTGATCCGATGTGTGGACTCATGATTTTATCGCACGTATCGTCTCCTC
TGCACGCTGTGCATAGTCATACTGATAGCACTTTGGTCATTGACCCCTGC
GTCCCTACAAGCCGGGACGGAGCGTGTCAGGTTTGCACCTCCTTGGCCAA
GCAAGCACAGACTCAGCTATGCTATGGATACAGTTAAATCGTTTGGACTT
CTAACTATGCTCATAGTCAATTCGAAACATCGGCCATCGACCCTCCAGTA
CAATACCGGGTCCACGGAGTCGAGAGATTCCGCGGGCCGGGTCATGGGCC
GGCTCAGTTTCACGGATCAATCCAGTACCGGGTTCATGGGTCGTGAAGAC
CCGACCCGGCACTGCATTTGCGTGCACACCCTTGGAAACGCTAGTCTTGT
TCTTCTTTTGTTGTTGTTCATTTTTTCCCTGTCCGCTCTCATCGCCCGGC
TCTGAATCTCAAGGGCCACTTTCCTGCCCAACTTACCGAGATCCGGCCAA
TACTTGACACAGTTCATGACGTGTTCAAAGTCCAAACTTGTACGAGTAGC
AAAAACTATGTGCCCTTGCTCGATCGTTCTCCCCCCCCCCCTGCAGGGAT
ACTGGCGCTGGGGCTGCCAGCCCAGCTCCAGCGGCACCGTCCCAGACGGC
TTCATCCGCTGGAAGGCGTTTGCATCCCCGGGGACCCTGGAACGGGCGGT
GTCCAACCAGGTGCTCTTCCTGGGCCGGCTAAAGGTACTGTACTGCTGCT
CATGTGCATGCGCGTGTGTGTGCGTGAGTGCAAAGCTGCGAGCACGCGTG
CATGCGTGCGTACGTGCACACACATGTGTGTGTGAGTGTTGTGTGCGTGT
ACGCGTGTGCCTATGTGGATGTGTGTGAGGGTTTGTGTGTTGTGTACGTT
CACACGTGCACACGTGTGCGTATGTGTGCGCGCGCATGTGTGTGGGTGTG
CGGGTGCATGCCGGGTGCGACCTATCACAGCTATGGCCTGTTGCAACGGC
AATGGATCGCTTCGGTGGCTGGCATCAACAATCCTGTTTTCATGTGTGTG
TGTATAGAAGTACTTTCGAGTGCATATGTCAGACAGGGAGCTGCCCTGTC
CCATTCATTCCAATAGCCGTCGGCACGGCATAGGTACTACACGTGCCACC
CTGCTTTCTTGGCTGTGATGCCATGTGATGTGATGTGTAATCTAATTCAC
TAAAGCCGGACATTGCATCATCTAGCGAACCGTCGCATTAGTGCATTGCA
GTGCAGCACAGTATTTTCCGGACCACGATGTGTTGTGATGTGTAGAGTAG
TCTACAGTAGATTGCTGTACTTGGTTGGACACACAGTTTGACATCAAATC
ATATCACATCGCAGGAGGACGCTGCACTGCTTGCTGGACTGCCGACCGAC
CAGCCCCGTCAGGGTAGGTAGCCCTGCAGCCACTTGCCCTCGCATCCCTA
AATGCTACTTCCAAGTACTTCGAAGTACAGTCCAGAAAGGCCCCTTGAGG
GTTTAACCCTTTGAGGAGTGTTAACGAATAGTGGTACGCTAACCTACAGG
AGTTTAGTGTGGGATGTTTTCCACATCGTCATCTAATAGTTAAGCATGGC
ACAGCCAACAGAGAGCACTATGCCTTGGCTGAGCGCAAGTACTGTACTAT
GTGGCACATATCCTCCGAAGCCCGCCAAACTATGTACTGGGGTTTGCAGT
GCAGCACCTACTGTGTGGTAGGAACCGTCTGCGTTTCAGGTGCATGTCCT
TTGTACGTACTGTACGGTGCAGTGCTTCCAAAGTAAGTACACTTGTAGCA
GATAACCGCCCGGTAAAACGCCGAGCGAGGCTCTCACTCGGTACAGTCGA
GCGCTGTACTACTTTACATACATACTGTACATACGTACTGTAGTACATGT
TCAAGTATTCTTCGGGGTGAGCGAGCAAGTATGCGTTTCGTGCTGGTCCT
TCCCACGCCACAATAATCGCCCAAGCGATGACGACAGAACGACCGACCGA
ACTGTCGACGGACGCCGTCCATGTACAACACAGGTGCTGAAAGGGGCGCT
GGCCCCCGCGTGGAGGAGCGCGCGGGACCGCTTCAAGTACGTGGCGGCCG
GGCGTTGCGACCTGCTGTCCTGTTGGCGACAGGTGAGGGGTGAGGGGTGA
GAGGTCTCACACGGCCTCGGGTGCCGCCGGTCGGTCGGTCCTCCCAAAAG
CGGCGTATTTTTCCGGTGAGGTCTTGCGATCCCCCCACCGCCCCGTGCTC
GCCGCCGGAAGATTTTTGGCTACGAGTATTTCCTTTCGCCCCGGGGGTAG
GTAACTGTGTTTCCAGTATGTACAGTAGATCGCGAAGTTGGTGTTTTCCC
GGAGTCCTTGCCCCCGGAAAACGCCTTCCTTGGAGTAGATCCAGAAATGC
CCTCCCGAATAGTATGGCATGGGGTGTCAAAGATCTCTCTGATGGTCTCG
GTATGTGGCGTGAACGTGTAGCGAAAAGGATTGCAAGAACGCTGTTGTGT
AAGTACTGTAGTATACTTCGAGGTATATGTATTCACATCGTGCTTGCCGT
AGTCCCGAGACCATTGACCACGCGCCTCTGCCGAGACGGCGCGCCTCTGC
CGAGACGGCACAGTAGTGAAGACAAAACTGAACGGCCGCGAGACACAGCC
CGCTGAAAATCGCCACGGGGACGCTCGTGCCCGCGAATCAATTAACTGAA
ACTGGTCCCAGGTGGAGGCAGAGGCGGCGAAGCTGAAGCTTGCGCGAGCT
GCAGCGGTGGCCCAGCAGGAGCCGCGTCCGGGGGCGGGGGCAGGGGAACG
GACGTCGGAGCGGTGGGCTGCTGGAGAGGCTGGCGGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig87:446735..451172-

>mRNA_S-ischiensis_contig87.20274.1 ID=mRNA_S-ischiensis_contig87.20274.1|Name=mRNA_S-ischiensis_contig87.20274.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1524bp|location=Sequence derived from alignment at S-ischiensis_contig87:446735..451172- (Schizocladia ischiensis KU_0333)
AGGGTTGGCCCGCATGTGGACCGCCACCTGGTGGCCCTCCGGGAGGACCG
GCGGGTGGTCTTCGCCGCCACCAAGAGGGTTGGCCCGCATGTGGACCGCC
ACCTGGTGGCCCTCCGGGAGGACCGGCGGGTGGTCTTCGCCGCCACCAAG
GTGTGCCTGGATGCCCTGCCCGCCCGCGAGCACGAGAAGTACCTCCGCCT
GGCCGTGCTGCCTACCCATACCATAGCGCCGGACCTCATGTTGGAGGCAC
TGTGGGACATTTCGTCGCCCGCCGGTGTGCCTGGATGCCCTGCCCGCCCG
CGAGCACGAGAAGTACCTCCGCCTGGCCGTGCTGCCTACCCATACCATAG
CGCCGGACCTCATGTTGGAGGCACTGTGGGACATTTCGTCGCCCGCCGGC
GGCGGGGGGAAAGAGCAGCAGCAGGAGCAGGAGCAGCAGCAGGAGCAGCA
GGAGCACATGGATGTGGGCTCGACCCTGGACAGCCTCTTGGCGCTAAGGC
TGGTGCAGCCCATGAGGCTGTGCTGCAGCCACGGCGGCGGGGGGAAAGAG
CAGCAGCAGGAGCAGGAGCAGCAGCAGGAGCAGCAGGAGCACATGGATGT
GGGCTCGACCCTGGACAGCCTCTTGGCGCTAAGGCTGGTGCAGCCCATGA
GGCTGTGCTGCAGCCACGGTGGCTGCGACGGCGGTGGCGATGACGAGGAC
CGCGCATGGGGACCACGCCGAGGGGTACCAAAGGTGGCTGCGACGGCGGT
GGCGATGACGAGGACCGCGCATGGGGACCACGCCGAGGGGTACCAAAGGG
ATACTGGCGCTGGGGCTGCCAGCCCAGCTCCAGCGGCACCGTCCCAGACG
GCTTCATCCGCTGGAAGGCGTTTGCATCCCCGGGGACCCTGGAACGGGCG
GTGTCCAACCAGGTGCTCTTCCTGGGCCGGCTAAAGGGATACTGGCGCTG
GGGCTGCCAGCCCAGCTCCAGCGGCACCGTCCCAGACGGCTTCATCCGCT
GGAAGGCGTTTGCATCCCCGGGGACCCTGGAACGGGCGGTGTCCAACCAG
GTGCTCTTCCTGGGCCGGCTAAAGGTGCTGAAAGGGGCGCTGGCCCCCGC
GTGGAGGAGCGCGCGGGACCGCTTCAAGTACGTGGCGGCCGGGCGTTGCG
ACCTGCTGTCCTGTTGGCGACAGGTGCTGAAAGGGGCGCTGGCCCCCGCG
TGGAGGAGCGCGCGGGACCGCTTCAAGTACGTGGCGGCCGGGCGTTGCGA
CCTGCTGTCCTGTTGGCGACAGGTGGAGGCAGAGGCGGCGAAGCTGAAGC
TTGCGCGAGCTGCAGCGGTGGCCCAGCAGGAGCCGCGTCCGGGGGCGGGG
GCAGGGGAACGGACGTCGGAGCGGTGGGCTGCTGGAGAGGCTGGCGGGGT
GGAGGCAGAGGCGGCGAAGCTGAAGCTTGCGCGAGCTGCAGCGGTGGCCC
AGCAGGAGCCGCGTCCGGGGGCGGGGGCAGGGGAACGGACGTCGGAGCGG
TGGGCTGCTGGAGAGGCTGGCGGG
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