mRNA_S-ischiensis_contig87.20272.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig87.20272.1
Unique NamemRNA_S-ischiensis_contig87.20272.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig87.20272.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig87contigS-ischiensis_contig87:433657..434175 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size521
Cds size381
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817350.9300244-CDS-S-ischiensis_contig87:433656..4340371622817350.9300244-CDS-S-ischiensis_contig87:433656..434037Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 433657..434037 +
1695741048.1619534-CDS-S-ischiensis_contig87:433656..4340371695741048.1619534-CDS-S-ischiensis_contig87:433656..434037Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 433657..434037 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817350.9415076-UTR-S-ischiensis_contig87:434037..4341751622817350.9415076-UTR-S-ischiensis_contig87:434037..434175Schizocladia ischiensis KU_0333UTRS-ischiensis_contig87 434038..434175 +
1695741048.177415-UTR-S-ischiensis_contig87:434037..4341751695741048.177415-UTR-S-ischiensis_contig87:434037..434175Schizocladia ischiensis KU_0333UTRS-ischiensis_contig87 434038..434175 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig87.20272.1prot_S-ischiensis_contig87.20272.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig87 433657..434037 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig87.20272.1

>prot_S-ischiensis_contig87.20272.1 ID=prot_S-ischiensis_contig87.20272.1|Name=mRNA_S-ischiensis_contig87.20272.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=127bp
RRHRRRLRSRLGSDTSTRAGVRASPPAAGVALPPARPPKDGHRAACPAEA
RAFARRRRRPWAPTPGPGAPPPAAAPGPLSAATCPGPAAPAAPHPRAHRW
PPSQRRHRCRCCRRSCCCCCCQCQGS*
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mRNA from alignment at S-ischiensis_contig87:433657..434175+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig87.20272.1 ID=mRNA_S-ischiensis_contig87.20272.1|Name=mRNA_S-ischiensis_contig87.20272.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=519bp|location=Sequence derived from alignment at S-ischiensis_contig87:433657..434175+ (Schizocladia ischiensis KU_0333)
CGCCGCCACCGCCGCCGCCTTCGGTCACGGCTTGGCTCGGATACGTCGAC
TCGGGCAGGCGTGCGCGCGTCACCTCCTGCTGCGGGGGTCGCACTGCCCC
CGGCAAGGCCTCCAAAAGACGGCCACCGGGCGGCATGCCCAGCAGAGGCT
CGGGCTTTTGCGCGCCGCCGTCGCCGCCCGTGGGCCCCCACGCCGGGCCC
CGGTGCACCCCCGCCGGCGGCAGCCCCCGGCCCTCTGAGCGCGGCCACGT
GCCCCGGGCCTGCGGCTCCGGCGGCTCCCCACCCCCGGGCCCATCGTTGG
CCCCCGTCCCAGCGTCGCCATCGTTGCCGTTGTTGCCGCCGCAGTTGTTG
TTGTTGCTGCTGCCAGTGCCAGGGAAGTTGACGCTGTAGTCGTCGTCCAG
CGCCCCGAGCTGGGGCGGCCGCGGTGACTCCCCGCCGCCCAGGCCACCCG
CGGGGGGACTGGTCCCCGCCAGGGCGCGTTCCTTCCGCCGGGCAGCCGCC
ACCGCCTCCGCCGCCGCCT
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Coding sequence (CDS) from alignment at S-ischiensis_contig87:433657..434175+

>mRNA_S-ischiensis_contig87.20272.1 ID=mRNA_S-ischiensis_contig87.20272.1|Name=mRNA_S-ischiensis_contig87.20272.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=762bp|location=Sequence derived from alignment at S-ischiensis_contig87:433657..434175+ (Schizocladia ischiensis KU_0333)
CGCCGCCACCGCCGCCGCCTTCGGTCACGGCTTGGCTCGGATACGTCGAC
TCGGGCAGGCGTGCGCGCGTCACCTCCTGCTGCGGGGGTCGCACTGCCCC
CGGCAAGGCCTCCAAAAGACGGCCACCGGGCGGCATGCCCAGCAGAGGCT
CGGGCTTTTGCGCGCCGCCGTCGCCGCCCGTGGGCCCCCACGCCGGGCCC
CGGTGCACCCCCGCCGGCGGCAGCCCCCGGCCCTCTGAGCGCGGCCACGT
GCCCCGGGCCTGCGGCTCCGGCGGCTCCCCACCCCCGGGCCCATCGTTGG
CCCCCGTCCCAGCGTCGCCATCGTTGCCGTTGTTGCCGCCGCAGTTGTTG
TTGTTGCTGCTGCCAGTGCCAGGGAAGTTGACGCCGCCACCGCCGCCGCC
TTCGGTCACGGCTTGGCTCGGATACGTCGACTCGGGCAGGCGTGCGCGCG
TCACCTCCTGCTGCGGGGGTCGCACTGCCCCCGGCAAGGCCTCCAAAAGA
CGGCCACCGGGCGGCATGCCCAGCAGAGGCTCGGGCTTTTGCGCGCCGCC
GTCGCCGCCCGTGGGCCCCCACGCCGGGCCCCGGTGCACCCCCGCCGGCG
GCAGCCCCCGGCCCTCTGAGCGCGGCCACGTGCCCCGGGCCTGCGGCTCC
GGCGGCTCCCCACCCCCGGGCCCATCGTTGGCCCCCGTCCCAGCGTCGCC
ATCGTTGCCGTTGTTGCCGCCGCAGTTGTTGTTGTTGCTGCTGCCAGTGC
CAGGGAAGTTGA
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