mRNA_S-ischiensis_contig87.20268.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig87.20268.1
Unique NamemRNA_S-ischiensis_contig87.20268.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig87.20268.1 vs. uniprot
Match: A0A6H5JZJ2_9PHAE (S5A_REDUCTASE domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JZJ2_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 6.200e-18
Identity = 44/72 (61.11%), Postives = 47/72 (65.28%), Query Frame = 2 
Query:    2 FRVREHFVSYGYGFSVAAQAIMALVLFGRGPGSGSLHTLSVLHTLGVAFYGARLALFCRWRDTLPSFQGLRR 217
            FR+REHFVSYGYGFSVA QA  A  LF        LHTLS LH  G+  YG RLA FC WRDTL  FQ  R+
Sbjct:  139 FRIREHFVSYGYGFSVALQAAGAAWLF-----RDKLHTLSALHAAGLVAYGLRLASFCGWRDTLSCFQNRRK 205
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig87.20268.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JZJ2_9PHAE6.200e-1861.11S5A_REDUCTASE domain-containing protein n=2 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig87contigS-ischiensis_contig87:402897..404173 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size228
Cds size228
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817349.847682-CDS-S-ischiensis_contig87:402896..4029541622817349.847682-CDS-S-ischiensis_contig87:402896..402954Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 402897..402954 +
1695741047.4704435-CDS-S-ischiensis_contig87:402896..4029541695741047.4704435-CDS-S-ischiensis_contig87:402896..402954Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 402897..402954 +
1622817349.8589356-CDS-S-ischiensis_contig87:404003..4041731622817349.8589356-CDS-S-ischiensis_contig87:404003..404173Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 404004..404173 +
1695741047.481363-CDS-S-ischiensis_contig87:404003..4041731695741047.481363-CDS-S-ischiensis_contig87:404003..404173Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 404004..404173 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig87.20268.1prot_S-ischiensis_contig87.20268.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig87 402897..404173 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig87.20268.1

>prot_S-ischiensis_contig87.20268.1 ID=prot_S-ischiensis_contig87.20268.1|Name=mRNA_S-ischiensis_contig87.20268.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=76bp
LPCEGALCQLRLWLLGRGTGHHGARALWQRPRQRVAAHTLGFAHAGGGLL
RCQVGPLLPLEGYAALFPGLAQVSA*
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mRNA from alignment at S-ischiensis_contig87:402897..404173+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig87.20268.1 ID=mRNA_S-ischiensis_contig87.20268.1|Name=mRNA_S-ischiensis_contig87.20268.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1277bp|location=Sequence derived from alignment at S-ischiensis_contig87:402897..404173+ (Schizocladia ischiensis KU_0333)
CTTCCGTGTGAGGGAGCACTTTGTCAGCTACGGCTATGGCTTCTCGGTCG
CGGCACAGGTGGGCAGCGTCACGGGCTATGAGAGGCCTTGTCGGCTGGGC
ACATGCGGGTGGGCACTGCGTGATAGAACCCTTCATCTCCTGCACCAGTA
CGGGCGTTGTTGGTAGGGGGGGGGGAAACTCCCGTTCGGCGGAGTGCAAC
TCCTTTCGCAGCCGGTCACGTGGAAGGCGCGTGGGTTCGCTTTACAGCAG
CCAACGGGATCGGTTGGCCGTGCGTCGTGACGCGCGCTGGCGGCTGAGAG
CGGCGCAGGGTTTAGGGTGAGAACATGACCGCTCCCTTGAGTGGCCCTAG
CCTCCACACACGGCAGAGGTGACGGCTCTTTGTCCATTCCTTCAAATTTG
CTGATTGTCCCCATGGGACGTGTGATCAATTGATTGCAGTGTAGAGTGCT
TCGAAGTATATGGCTATGGCAAGCCACTCGTGAGAGTCCTGAGTCCCCCC
TCCGCCTCCCTACGAAGCCTTTGTGGTATTCCTCCTTCTGGTGCGTGCAC
AGGTAGTGTTTGGAGGTGCATACTTGGAAGTATATGCTGTACAAGTAGAT
ATTGGCGTGTGCACTTCATACGTTTATGTGGTTTACCTTCATACATGTTT
TCTGATGGATGTTCACATGACTTGGAAGTAGTTTTTCGTTCTGTCGACTG
CTGGACAGGGTTGTTACTACCCCGTGGCCTGTGCATGCCACCGACCGTCG
GCCCGGTGTACCCATTCAAGGATGTTTGTACAAACCCCCGCTTTCGGCTT
GTACAAGCCACGCATCCCTACAATGTCGCCGGGACGGAACATGCCGGTCC
TCGTGTGCTGTACTCTAAGGGTTAGTGGGGACCTCTGTTGGCTGCGAGGA
CTCCCAAGTTCCAGCGCGGGTACCTTTCGGCATACTTCCCGGAATATTCT
GCTCTAGTTGCAAGTACACAGTGAGTAGGAGTTAGCGATGCTGTACCTTC
GTTCTCTCCTCTGCTGTACCACACTCACTTCGGAGTACGAAGTACTTGCT
AAGTTTTCGATTACCCTCCTCTCGTGCACCTTACCCACCCGTTCTGCCGG
TGCCCAGGCCATCATGGCGCTCGTGCTCTTTGGCAGAGGCCCCGGCAGCG
GGTCGCTGCACACACTCTCGGTTTTGCACACGCTGGGGGTGGCCTTTTAC
GGTGCCAGGTTGGCCCTCTTCTGCCGCTGGAGGGATACGCTGCCCTCTTT
CCAGGGCTTGCGCAGGTGAGCGCATAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig87:402897..404173+

>mRNA_S-ischiensis_contig87.20268.1 ID=mRNA_S-ischiensis_contig87.20268.1|Name=mRNA_S-ischiensis_contig87.20268.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=456bp|location=Sequence derived from alignment at S-ischiensis_contig87:402897..404173+ (Schizocladia ischiensis KU_0333)
CTTCCGTGTGAGGGAGCACTTTGTCAGCTACGGCTATGGCTTCTCGGTCG
CGGCACAGCTTCCGTGTGAGGGAGCACTTTGTCAGCTACGGCTATGGCTT
CTCGGTCGCGGCACAGGCCATCATGGCGCTCGTGCTCTTTGGCAGAGGCC
CCGGCAGCGGGTCGCTGCACACACTCTCGGTTTTGCACACGCTGGGGGTG
GCCTTTTACGGTGCCAGGTTGGCCCTCTTCTGCCGCTGGAGGGATACGCT
GCCCTCTTTCCAGGGCTTGCGCAGGTGAGCGCATAGGCCATCATGGCGCT
CGTGCTCTTTGGCAGAGGCCCCGGCAGCGGGTCGCTGCACACACTCTCGG
TTTTGCACACGCTGGGGGTGGCCTTTTACGGTGCCAGGTTGGCCCTCTTC
TGCCGCTGGAGGGATACGCTGCCCTCTTTCCAGGGCTTGCGCAGGTGAGC
GCATAG
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