mRNA_S-ischiensis_contig87.20266.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig87.20266.1
Unique NamemRNA_S-ischiensis_contig87.20266.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig87.20266.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig87contigS-ischiensis_contig87:378532..382094 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size575
Cds size573
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig87.20266.1prot_S-ischiensis_contig87.20266.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig87 378532..382094 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817349.594476-CDS-S-ischiensis_contig87:378531..3785861622817349.594476-CDS-S-ischiensis_contig87:378531..378586Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 378532..378586 -
1695741047.2681503-CDS-S-ischiensis_contig87:378531..3785861695741047.2681503-CDS-S-ischiensis_contig87:378531..378586Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 378532..378586 -
1622817349.6052926-CDS-S-ischiensis_contig87:378853..3789871622817349.6052926-CDS-S-ischiensis_contig87:378853..378987Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 378854..378987 -
1695741047.2776175-CDS-S-ischiensis_contig87:378853..3789871695741047.2776175-CDS-S-ischiensis_contig87:378853..378987Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 378854..378987 -
1622817349.6160104-CDS-S-ischiensis_contig87:379565..3796811622817349.6160104-CDS-S-ischiensis_contig87:379565..379681Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 379566..379681 -
1695741047.28761-CDS-S-ischiensis_contig87:379565..3796811695741047.28761-CDS-S-ischiensis_contig87:379565..379681Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 379566..379681 -
1622817349.6264892-CDS-S-ischiensis_contig87:380802..3809531622817349.6264892-CDS-S-ischiensis_contig87:380802..380953Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 380803..380953 -
1695741047.297131-CDS-S-ischiensis_contig87:380802..3809531695741047.297131-CDS-S-ischiensis_contig87:380802..380953Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 380803..380953 -
1622817349.6394308-CDS-S-ischiensis_contig87:381977..3820941622817349.6394308-CDS-S-ischiensis_contig87:381977..382094Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 381978..382094 -
1695741047.3065042-CDS-S-ischiensis_contig87:381977..3820941695741047.3065042-CDS-S-ischiensis_contig87:381977..382094Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 381978..382094 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig87.20266.1

>prot_S-ischiensis_contig87.20266.1 ID=prot_S-ischiensis_contig87.20266.1|Name=mRNA_S-ischiensis_contig87.20266.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=191bp
DSTGGKGRGLGAPGSPPPPTPPERRRRSMPVGGTHRPPRPPGRESRENRG
GSAAGSTGSGGSNASGGKARRRATLGGTANNAVAASPTHEGLGTHRRRTS
LPGEQGAGQERRSSLDILVAETRTLARRVWGVESSRHLDSISLEGMSSSS
EGVSDDGTLTSVEGTVPPADIARQLLEQIGDEDNDNQQGGG
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mRNA from alignment at S-ischiensis_contig87:378532..382094-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig87.20266.1 ID=mRNA_S-ischiensis_contig87.20266.1|Name=mRNA_S-ischiensis_contig87.20266.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3563bp|location=Sequence derived from alignment at S-ischiensis_contig87:378532..382094- (Schizocladia ischiensis KU_0333)
GACAGCACGGGCGGCAAGGGCCGTGGCCTTGGGGCGCCGGGATCGCCGCC
GCCGCCGACCCCCCCGGAGCGGCGGCGGAGAAGCATGCCTGTGGGCGGCA
CTCACAGGCCCCCCAGGGTGAGGTGTTTCTCTTATGTAGTAGTGCTTACA
GTACTCGTACTGTATTATGTGCTGTATTGTTCTGTACCTGCTCCGTCTCA
ACTGAGGCGCAGGGTCAATGGTCTCGGGACTACGGCAAGCAGCACGTGAG
TACATATATCCTACGCAGTATATGTTCTGTTCTGTACTGTACTCTTGGGT
GGCACAGCACGGTGTAGAGTACAAGTATAGAGTACTGGGCCGATGGTCGG
TGGAAGGCGTGCACAGGACACCAGGCAACCGTGTCTGATAGGATTACGTG
TATCACAGGCCGACGACATCACCCGCGACTCCGATGAAGCTTCTTCCAGA
TGAGGGTAGCAGTGCATATGTGTGGTGTGTCGAAATGTCGCATGTTGTGT
CTGTGCCATCAGACAACCTTGGGATGCGGGCCTGAACTGGACGTTCTTCT
CTCCGTGGGGCAAGCTCTAGCTCTACTCTACTGTACTACAGTACTGTACG
GTACTGTACTGCACTCTACTGTACTCTGCTGTTGTGACCGAACGGTGAGC
CGGCTGTACTGCCTTCATGCCCGCCCCGCCCGGGCAATACCGGCCAACAA
GGCGAGTACTATTGTACCATTGCGGTCGCGATGACACGATAGTGACGATG
GACACACATTGGACTAAATCGTCCTTCAAGCCGGGGTGCAATGTAGCAAT
GTGGGGTGCAAAAGAGTTTCAGGTGCCGGGTGAAAAACACTTGGTTTATT
CGGAAAGTCGAGGCCATATTTTCCTCAAGACATGAGTTTAGTCCGGGACA
AAAAAGCTAGCCTGTTTGGAAATGCCGGGGGGCATTTCACGTACAAACAA
CCAGCAATGTCAAAAACCTTTACTTTCCGTACGGTAGTACTGTAGTGACA
ATCTGTAATTGCATATGCATTCTCGTATTACACCTGTTTAGTGGCACCTT
ACAATAGTTAATAAGTGCTTGGAATTTCTAGCATTACAGTACTACTTCCA
AAGTACCCTCAATCTCAATCCCTGTTGCAATGTCCCTCAAGCCCCCTGGC
AGGGAGAGCAGGGAGAACAGGGGTGGCTCTGCCGCGGGGAGCACAGGCAG
CGGCGGCAGCAATGCCTCCGGGGGGAAGGCACGGCGGCGGGCAACCCTGG
GGGGCACTGCAAACAACGCTGTGGCTGCCTCACCCACCCACGGCGAGTAC
TGTACTTCGAAGTACTGTGTGCTGTGCTGCACTGTGCACAGTAAAGTGTA
GTACAGTACTCGAACAGCAATGTGCTGTAGAGCACATTGCACACTGTGCT
GTCTACTGCTGGACACAAGACAAGCCAAGTAGGTAGTACTTATGCTGTAT
ATACTGCTGTACAGTATGCCTATTTGTTGGACATACATAGCTGCTGCAGG
TACGCCAGCGGTACTGCACACACCACACGTACAACTGCACTGTACTGTAC
TGCACTTTACTGTGCCGAAGTACTTGGGAATTGCTTCAAAGTACGGTGCA
GTGGGAGTAGGCTATGCTCGCAGTCCATTCACGTGCAAGTACTATAGACT
TCGTACAGTAGTACATAGCAATGTACTTAGTAATGTACTTCTGTGCAATG
TACAAGGTACAAAACTTGCCGGATACAGTACTCGTACTTTGAGTTTCACA
ATGTGGTACAGTATAGTACGGTACAGTACTGTACTGCTGTACTTGGAAGT
GCTTGGTACCGTGCAGCAGTAAAGTGTACAAACTGTATACTGTACTATGT
ACTCACGCTGTGCTTGTCTTGAGCAATGACCCGGTACCCCGACCGGTACA
GTGGTACATTATTGTGGAGTACTGCTTCCTTACCCTACCGTAGTCGTCGG
AGAGATTTTGCCCCCATGGGCCAATTTTCGGGGGAATATTTCAAGCCGGG
AAGTTCCTGAATTGTCCCGAAGGCCTCAGAAAAGTTCCCCGAGATCCTGG
GGGAGATTTTCCGAGTTTTCCCGCGCGCATCCGATCAGTATTCGGCGAGA
AATGCCCTCGCGAAGTTCGGCATGGGAGGGCAAGATCTCTCCGACGATTA
CGGTACTTGTAACCCTGGAAGTACTTGGAAGGAAGTAGAGTAGTATTCGG
TACAGTACTCCGCCATCAACTGCGTGTGAGTGCATACATATACTCCGTAC
TCTCAGTACAGTAGCAATTGGTACAGTACAGTATTACTTGGAAGTTCTTG
ATACAGCGGCGCTTGAAAGTATTGTAACGTTTTCGCTGCACTAACATCAG
TAACAGTTAGGCTTGTACTCCATTCTTGCCCTACACCATACACATGTTGC
GTGGCACGAGCAGAGGGGCTGGGAACACACCGCAGGAGGACCAGCCTGCC
GGGGGAGCAGGGGGCTGGCCAGGAGCGGCGCTCCTCACTGGACATATTGG
TGGCGGAGACGCGCACCCTGGCAAGGAGGGTGAGTACTCTAATACTGTAC
TGTACAGTAGTGCTACAGTACATTGCCACCTCGTAAGTCAGTTAGGACAA
AGTCTATTGCTGTACTCCTGCTTGTATTGGTACCTAGTACGAGTACTTGC
TTCCTTGCTCGCGCTTTCACATGCTACACTGTACTTCGAAGTTCTATATT
GTGCTGTACTATACGACACTGTGCTGTGCTGTACTCACTACTGTAGTATG
TATCGGAGACGCGAAACCTATCATATACTCGAGTACGTGAGTGCCCAGTG
TAGTTGTGCTTGCTTGCATATAGTTCTTGAAAGTACTCGTACGAGTATAG
ACATACATATGTACGTATTTTGAAGTACATACACTAGCATACATCAAAGT
GTAGTGCAGTATGAGTTCTAGTACTACAGTGGTACGAGTACTGTACTACA
GCAGTGCGTGAGTACTGTACATTGTACTATAGTTTGTACCGCACAGAACG
GCACTGTAGTACCCGTACGGCACGGAACTCTCTCCACTGTACTTTGCTTC
ACTGTACTGTGCCGTACTGTACCGTACGTCACCAACACCGTACCACACTG
CACCCAGGTCTGGGGCGTGGAGTCAAGCCGCCACCTGGACTCAATAAGCC
TGGAAGGCATGAGCTCTTCCTCCGAGGGCGTGTCCGATGACGGCACCCTC
ACATCTGTGGAGGGGACAGTGCCCCCTGCGGACATTGCCAGGTGAGGTAC
AAGTAACGTCTCAAGTCATCGCCGTCTCTATGGGCAGCGGTGCAATATCG
AATTCCAGAATGCCTGCATCAGTATCGAATACATAATTCGATATACTTCC
AAGAAACATGCGACAGTAAAACAGTACAATATATGTACTCACTTGGTGCT
TGCCGTAGTCCCGAGACCATCGACCCCGCGCTCACACAATACACGACAAT
GTACTGCTCTGAGCACTCGAGTTATATGAACTGTTTGTGCACACACGGCT
GCGGGCAGGCAACTGCTGGAGCAAATCGGAGACGAGGACAACGACAACCA
GCAGGGGGGTGGT
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Coding sequence (CDS) from alignment at S-ischiensis_contig87:378532..382094-

>mRNA_S-ischiensis_contig87.20266.1 ID=mRNA_S-ischiensis_contig87.20266.1|Name=mRNA_S-ischiensis_contig87.20266.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1146bp|location=Sequence derived from alignment at S-ischiensis_contig87:378532..382094- (Schizocladia ischiensis KU_0333)
GACAGCACGGGCGGCAAGGGCCGTGGCCTTGGGGCGCCGGGATCGCCGCC
GCCGCCGACCCCCCCGGAGCGGCGGCGGAGAAGCATGCCTGTGGGCGGCA
CTCACAGGCCCCCCAGGGACAGCACGGGCGGCAAGGGCCGTGGCCTTGGG
GCGCCGGGATCGCCGCCGCCGCCGACCCCCCCGGAGCGGCGGCGGAGAAG
CATGCCTGTGGGCGGCACTCACAGGCCCCCCAGGCCCCCTGGCAGGGAGA
GCAGGGAGAACAGGGGTGGCTCTGCCGCGGGGAGCACAGGCAGCGGCGGC
AGCAATGCCTCCGGGGGGAAGGCACGGCGGCGGGCAACCCTGGGGGGCAC
TGCAAACAACGCTGTGGCTGCCTCACCCACCCACGCCCCCTGGCAGGGAG
AGCAGGGAGAACAGGGGTGGCTCTGCCGCGGGGAGCACAGGCAGCGGCGG
CAGCAATGCCTCCGGGGGGAAGGCACGGCGGCGGGCAACCCTGGGGGGCA
CTGCAAACAACGCTGTGGCTGCCTCACCCACCCACGAGGGGCTGGGAACA
CACCGCAGGAGGACCAGCCTGCCGGGGGAGCAGGGGGCTGGCCAGGAGCG
GCGCTCCTCACTGGACATATTGGTGGCGGAGACGCGCACCCTGGCAAGGA
GGAGGGGCTGGGAACACACCGCAGGAGGACCAGCCTGCCGGGGGAGCAGG
GGGCTGGCCAGGAGCGGCGCTCCTCACTGGACATATTGGTGGCGGAGACG
CGCACCCTGGCAAGGAGGGTCTGGGGCGTGGAGTCAAGCCGCCACCTGGA
CTCAATAAGCCTGGAAGGCATGAGCTCTTCCTCCGAGGGCGTGTCCGATG
ACGGCACCCTCACATCTGTGGAGGGGACAGTGCCCCCTGCGGACATTGCC
AGGTCTGGGGCGTGGAGTCAAGCCGCCACCTGGACTCAATAAGCCTGGAA
GGCATGAGCTCTTCCTCCGAGGGCGTGTCCGATGACGGCACCCTCACATC
TGTGGAGGGGACAGTGCCCCCTGCGGACATTGCCAGGCAACTGCTGGAGC
AAATCGGAGACGAGGACAACGACAACCAGCAGGGGGGTGGTGCAACTGCT
GGAGCAAATCGGAGACGAGGACAACGACAACCAGCAGGGGGGTGGT
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