mRNA_S-ischiensis_contig87.20262.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig87.20262.1
Unique NamemRNA_S-ischiensis_contig87.20262.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig87.20262.1 vs. uniprot
Match: A0A7X3ZK45_9BACT (Gfo/Idh/MocA family oxidoreductase n=1 Tax=Candidatus Poribacteria bacterium TaxID=2026781 RepID=A0A7X3ZK45_9BACT)

HSP 1 Score: 84.3 bits (207), Expect = 1.850e-17
Identity = 43/80 (53.75%), Postives = 60/80 (75.00%), Query Frame = 2
Query:   26 SQQCRWGILSTAWIAHKYCRAITAAPNAVLQAVASRDQVKAAKFAEEENIPTAYSSYDQLLQDPAVDAVYIPLPTGVRKE 265
            +Q  RWGILSTA IA+K  RAI  A NA L A+ASR++ +A  +A++ N+ TAY++YD+LL DP++DA+YIPLP  +  E
Sbjct:    6 NQSVRWGILSTANIANKIARAIGLAQNAELVAIASRNEDRAMTWAQKHNLQTAYANYDELLSDPSLDAIYIPLPPSMHAE 85          
BLAST of mRNA_S-ischiensis_contig87.20262.1 vs. uniprot
Match: A0A089IFJ3_9BACL (Dehydrogenase n=31 Tax=Paenibacillus TaxID=44249 RepID=A0A089IFJ3_9BACL)

HSP 1 Score: 83.2 bits (204), Expect = 4.780e-17
Identity = 42/83 (50.60%), Postives = 53/83 (63.86%), Query Frame = 2
Query:   17 MDGSQQCRWGILSTAWIAHKYCRAITAAPNAVLQAVASRDQVKAAKFAEEENIPTAYSSYDQLLQDPAVDAVYIPLPTGVRKE 265
            MD + + RWGILST WIAH++   +  A N V  AV SR Q  A KFA +  +P AY++YD+L+ DP VDAVYI  P    KE
Sbjct:    1 MDNAYKVRWGILSTGWIAHQFVTDLAHASNGVAYAVGSRSQESADKFARDHEVPHAYATYDELVNDPNVDAVYIGTPHPFHKE 83          
BLAST of mRNA_S-ischiensis_contig87.20262.1 vs. uniprot
Match: V7D122_PHAVU (GFO_IDH_MocA domain-containing protein n=2 Tax=Phaseolus vulgaris TaxID=3885 RepID=V7D122_PHAVU)

HSP 1 Score: 81.6 bits (200), Expect = 2.330e-16
Identity = 45/84 (53.57%), Postives = 57/84 (67.86%), Query Frame = 2
Query:   14 LMDGSQQCRWGILSTAWIAHKYCRAITAAPNAVLQAVASRDQVKAAKFAEEENIPTA---YSSYDQLLQDPAVDAVYIPLPTGV 256
            ++D ++  R+GIL  A IA K  RAI  APNA L AVASR + KA +FA E   P +   Y SYDQ+L+DP VDAVY+PLPT +
Sbjct:    1 MVDNTKTVRFGILGCANIARKVARAIALAPNATLCAVASRSKEKAERFAAENGFPASVRVYGSYDQVLEDPGVDAVYVPLPTSL 84          
BLAST of mRNA_S-ischiensis_contig87.20262.1 vs. uniprot
Match: A0A495ZPK9_9BACT (Oxidoreductase n=6 Tax=Candidatus Poribacteria bacterium TaxID=2026781 RepID=A0A495ZPK9_9BACT)

HSP 1 Score: 81.3 bits (199), Expect = 2.530e-16
Identity = 45/82 (54.88%), Postives = 56/82 (68.29%), Query Frame = 2
Query:   20 DGSQQCRWGILSTAWIAHKYCRAITAAPNAVLQAVASRDQVKAAKFAEEENIPTAYSSYDQLLQDPAVDAVYIPLPTGVRKE 265
            +  Q  RWGILSTA IA K  RAI  A NA L AVASR + +AA +AE  N+PTAY +Y+ LL D ++DA+YIPLP  +  E
Sbjct:    4 ETKQPVRWGILSTANIATKVARAIHLAENADLIAVASRTKERAATWAENHNVPTAYGTYNALLADNSIDAIYIPLPPSLHAE 85          
BLAST of mRNA_S-ischiensis_contig87.20262.1 vs. uniprot
Match: A0E4P7_PARTE (GFO_IDH_MocA domain-containing protein n=1 Tax=Paramecium tetraurelia TaxID=5888 RepID=A0E4P7_PARTE)

HSP 1 Score: 81.3 bits (199), Expect = 2.920e-16
Identity = 43/76 (56.58%), Postives = 55/76 (72.37%), Query Frame = 2
Query:   38 RWGILSTAWIAHKYCRAITAAPNAVLQAVASRDQVKAAKFAEEENIPTAYSSYDQLLQDPAVDAVYIPLPTGVRKE 265
            R GI+STA IAHK C+AI  + +A +  VASR   KA ++A+  NI  AY SYD+LL+DP VD VYIPLPT ++KE
Sbjct:    6 RIGIMSTAEIAHKVCQAINCSDHAEVYCVASRSLEKARQWADAHNIKIAYGSYDELLEDPNVDGVYIPLPTSLKKE 81          
BLAST of mRNA_S-ischiensis_contig87.20262.1 vs. uniprot
Match: A0A177R854_9BACT (Oxidoreductase n=1 Tax=Verrucomicrobiaceae bacterium SCGC AG-212-N21 TaxID=1799659 RepID=A0A177R854_9BACT)

HSP 1 Score: 81.3 bits (199), Expect = 3.310e-16
Identity = 46/84 (54.76%), Postives = 56/84 (66.67%), Query Frame = 2
Query:   35 CRWGILSTAWIAHKYCRAITAAPNAVLQAVASRDQVKAAKFAEE-------ENIPTAYSSYDQLLQDPAVDAVYIPLPTGVRKE 265
            CRWGILSTA+IA K  +AI  A NA L AVASRD  K+ +F EE         +P A  SY+ L+  P +DA+YIPLPTG+RKE
Sbjct:    8 CRWGILSTAFIARKNWQAILDAGNASLVAVASRDVAKSRQFVEECQSQIAHPQVPEALGSYEALITHPGIDALYIPLPTGLRKE 91          
BLAST of mRNA_S-ischiensis_contig87.20262.1 vs. uniprot
Match: I1MZG8_SOYBN (GFO_IDH_MocA domain-containing protein n=3 Tax=Glycine subgen. Soja TaxID=1462606 RepID=I1MZG8_SOYBN)

HSP 1 Score: 80.5 bits (197), Expect = 6.140e-16
Identity = 45/84 (53.57%), Postives = 55/84 (65.48%), Query Frame = 2
Query:   14 LMDGSQQCRWGILSTAWIAHKYCRAITAAPNAVLQAVASRDQVKAAKFAEEENIPTA---YSSYDQLLQDPAVDAVYIPLPTGV 256
            + + S+  R+GIL  A IA K  RAI  APNA L A+ASR + KA KFA E   P     Y SYDQ+L+DP VDAVY+PLPT +
Sbjct:    1 MSENSKTLRFGILGCANIARKVARAIALAPNATLCAIASRSREKAEKFAAENGFPATVRVYGSYDQVLEDPCVDAVYLPLPTSL 84          
BLAST of mRNA_S-ischiensis_contig87.20262.1 vs. uniprot
Match: A0A0L9U9N8_PHAAN (GFO_IDH_MocA domain-containing protein n=5 Tax=Vigna TaxID=3913 RepID=A0A0L9U9N8_PHAAN)

HSP 1 Score: 80.5 bits (197), Expect = 6.140e-16
Identity = 45/84 (53.57%), Postives = 57/84 (67.86%), Query Frame = 2
Query:   14 LMDGSQQCRWGILSTAWIAHKYCRAITAAPNAVLQAVASRDQVKAAKFAEEENIPTA---YSSYDQLLQDPAVDAVYIPLPTGV 256
            ++D ++  R+GIL  A IA K  RAI  APNA L A+ASR + KA KFA E   P +   Y SYD+LL+DP VDAVY+PLPT +
Sbjct:    1 MVDTTKTVRFGILGCAEIARKVARAIDLAPNATLCALASRSKEKAEKFAAENGFPASVKIYGSYDRLLEDPGVDAVYVPLPTSL 84          
BLAST of mRNA_S-ischiensis_contig87.20262.1 vs. uniprot
Match: A0A2D5S5I9_9PLAN (GFO_IDH_MocA domain-containing protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2D5S5I9_9PLAN)

HSP 1 Score: 80.1 bits (196), Expect = 7.750e-16
Identity = 40/79 (50.63%), Postives = 55/79 (69.62%), Query Frame = 2
Query:   29 QQCRWGILSTAWIAHKYCRAITAAPNAVLQAVASRDQVKAAKFAEEENIPTAYSSYDQLLQDPAVDAVYIPLPTGVRKE 265
            + CRWG++ TA IA K  RA+  AP+A+  A+ASR   +AA FAEE  +  A+ SY  LL DP +DAVY+PLPT +R++
Sbjct:    6 ETCRWGVIGTAGIARKVVRAMHLAPHAIPVAIASRTLDRAAAFAEEHGLDRAHGSYAALLADPEIDAVYVPLPTTLRRD 84          
BLAST of mRNA_S-ischiensis_contig87.20262.1 vs. uniprot
Match: A0A2D5E6H7_9BACT (Oxidoreductase n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A2D5E6H7_9BACT)

HSP 1 Score: 80.1 bits (196), Expect = 8.830e-16
Identity = 39/79 (49.37%), Postives = 54/79 (68.35%), Query Frame = 2
Query:   29 QQCRWGILSTAWIAHKYCRAITAAPNAVLQAVASRDQVKAAKFAEEENIPTAYSSYDQLLQDPAVDAVYIPLPTGVRKE 265
            + CRWG++ TA IA K  RA+  AP+A   A+ASR   +AA FAEE  +   + +YD LL DP +DAVY+PLPT +R++
Sbjct:   27 ETCRWGVIGTAGIARKVVRAMHLAPHATPVAIASRTLDRAAAFAEEHGLDRGHGNYDALLADPEIDAVYVPLPTTIRRD 105          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig87.20262.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X3ZK45_9BACT1.850e-1753.75Gfo/Idh/MocA family oxidoreductase n=1 Tax=Candida... [more]
A0A089IFJ3_9BACL4.780e-1750.60Dehydrogenase n=31 Tax=Paenibacillus TaxID=44249 R... [more]
V7D122_PHAVU2.330e-1653.57GFO_IDH_MocA domain-containing protein n=2 Tax=Pha... [more]
A0A495ZPK9_9BACT2.530e-1654.88Oxidoreductase n=6 Tax=Candidatus Poribacteria bac... [more]
A0E4P7_PARTE2.920e-1656.58GFO_IDH_MocA domain-containing protein n=1 Tax=Par... [more]
A0A177R854_9BACT3.310e-1654.76Oxidoreductase n=1 Tax=Verrucomicrobiaceae bacteri... [more]
I1MZG8_SOYBN6.140e-1653.57GFO_IDH_MocA domain-containing protein n=3 Tax=Gly... [more]
A0A0L9U9N8_PHAAN6.140e-1653.57GFO_IDH_MocA domain-containing protein n=5 Tax=Vig... [more]
A0A2D5S5I9_9PLAN7.750e-1650.63GFO_IDH_MocA domain-containing protein n=1 Tax=Pla... [more]
A0A2D5E6H7_9BACT8.830e-1649.37Oxidoreductase n=1 Tax=Phycisphaerae bacterium Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig87contigS-ischiensis_contig87:351004..351708 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score85.9
Seed ortholog evalue9.8e-15
Seed eggNOG ortholog1536775.H70737_04540
Preferred namedhdh
EggNOG free text desc.Dehydrogenase
EggNOG OGs1TPT5@1239,26TSR@186822,4HAPJ@91061,COG0673@1,COG0673@2
COG Functional cat.S
Best tax levelPaenibacillaceae
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size265
Cds size249
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig87.20262.1prot_S-ischiensis_contig87.20262.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig87 351020..351708 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817353.9337146-UTR-S-ischiensis_contig87:351003..3510191622817353.9337146-UTR-S-ischiensis_contig87:351003..351019Schizocladia ischiensis KU_0333UTRS-ischiensis_contig87 351004..351019 +
1695741050.7438095-UTR-S-ischiensis_contig87:351003..3510191695741050.7438095-UTR-S-ischiensis_contig87:351003..351019Schizocladia ischiensis KU_0333UTRS-ischiensis_contig87 351004..351019 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817353.944983-CDS-S-ischiensis_contig87:351019..3511841622817353.944983-CDS-S-ischiensis_contig87:351019..351184Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 351020..351184 +
1695741050.755328-CDS-S-ischiensis_contig87:351019..3511841695741050.755328-CDS-S-ischiensis_contig87:351019..351184Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 351020..351184 +
1622817353.9579692-CDS-S-ischiensis_contig87:351624..3517081622817353.9579692-CDS-S-ischiensis_contig87:351624..351708Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 351625..351708 +
1695741050.7654781-CDS-S-ischiensis_contig87:351624..3517081695741050.7654781-CDS-S-ischiensis_contig87:351624..351708Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 351625..351708 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig87.20262.1

>prot_S-ischiensis_contig87.20262.1 ID=prot_S-ischiensis_contig87.20262.1|Name=mRNA_S-ischiensis_contig87.20262.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=83bp
MDGSQQCRWGILSTAWIAHKYCRAITAAPNAVLQAVASRDQVKAAKFAEE
ENIPTAYSSYDQLLQDPAVDAVYIPLPTGVRKE
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mRNA from alignment at S-ischiensis_contig87:351004..351708+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig87.20262.1 ID=mRNA_S-ischiensis_contig87.20262.1|Name=mRNA_S-ischiensis_contig87.20262.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=705bp|location=Sequence derived from alignment at S-ischiensis_contig87:351004..351708+ (Schizocladia ischiensis KU_0333)
GCTAAATTCCGCGCTGATGGATGGCTCGCAGCAATGCAGATGGGGCATTC TGAGCACCGCCTGGATAGCCCATAAATACTGCAGGGCGATCACGGCCGCG CCCAACGCTGTCCTTCAGGCAGTAGCCAGCCGTGACCAAGTGAAGGCCGC AAAGTTTGCGGAGGAAGAGAACATCCCCACCGTGAGTGCATGTGGCTCGA AAGAGCTGTCCGGAAGTACGATGGTGCACTCATGTCAGACAGGAGCTACC CCGTTGTGTGCTTGCCACTGGCCGTTGGCCCAGTATAGTTGCTGAACACC GGCCAGCTCCCACTGGGTAGCATTCCGGCCATTACCCTCACGTCCCCACT CTCAACATATGCCGGGACATAGCTTGCCGGGTTTTACCGGCAAAGCGTGT GTTCCACTGACCCTGTCTTGTCATTGGGATACGAGGGCACCCTGCAGAAG CCGGGTTTGCCGTCATTTGCTGGGAAGCGGTGCAGCCCTTTCATTTTATT CTGGTGCATGTTTTTGCGAGAGGCCCATTTTTTGCGGAAACTCGAGCACA AGCACTCAGGGTACTTTGAAGGACTTGCTAGAGACAAGTGACGTGACCGC CAACCTGTTGTACCCTGGCAGGCGTATAGCTCATACGACCAGCTGCTGCA GGACCCAGCGGTTGACGCGGTCTACATACCTCTCCCCACTGGCGTGAGGA AGGAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig87:351004..351708+

>mRNA_S-ischiensis_contig87.20262.1 ID=mRNA_S-ischiensis_contig87.20262.1|Name=mRNA_S-ischiensis_contig87.20262.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=498bp|location=Sequence derived from alignment at S-ischiensis_contig87:351004..351708+ (Schizocladia ischiensis KU_0333)
ATGGATGGCTCGCAGCAATGCAGATGGGGCATTCTGAGCACCGCCTGGAT
AGCCCATAAATACTGCAGGGCGATCACGGCCGCGCCCAACGCTGTCCTTC
AGGCAGTAGCCAGCCGTGACCAAGTGAAGGCCGCAAAGTTTGCGGAGGAA
GAGAACATCCCCACCATGGATGGCTCGCAGCAATGCAGATGGGGCATTCT
GAGCACCGCCTGGATAGCCCATAAATACTGCAGGGCGATCACGGCCGCGC
CCAACGCTGTCCTTCAGGCAGTAGCCAGCCGTGACCAAGTGAAGGCCGCA
AAGTTTGCGGAGGAAGAGAACATCCCCACCGCGTATAGCTCATACGACCA
GCTGCTGCAGGACCCAGCGGTTGACGCGGTCTACATACCTCTCCCCACTG
GCGTGAGGAAGGAGGCGTATAGCTCATACGACCAGCTGCTGCAGGACCCA
GCGGTTGACGCGGTCTACATACCTCTCCCCACTGGCGTGAGGAAGGAG
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