mRNA_S-ischiensis_contig87.20258.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig87.20258.1
Unique NamemRNA_S-ischiensis_contig87.20258.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig87.20258.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig87contigS-ischiensis_contig87:331440..332425 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size253
Cds size249
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817349.5542724-CDS-S-ischiensis_contig87:331441..3315501622817349.5542724-CDS-S-ischiensis_contig87:331441..331550Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 331442..331550 -
1695741047.2449794-CDS-S-ischiensis_contig87:331441..3315501695741047.2449794-CDS-S-ischiensis_contig87:331441..331550Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 331442..331550 -
1622817349.5654314-CDS-S-ischiensis_contig87:332285..3324251622817349.5654314-CDS-S-ischiensis_contig87:332285..332425Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 332286..332425 -
1695741047.2554903-CDS-S-ischiensis_contig87:332285..3324251695741047.2554903-CDS-S-ischiensis_contig87:332285..332425Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 332286..332425 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig87.20258.1prot_S-ischiensis_contig87.20258.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig87 331442..332425 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig87.20258.1

>prot_S-ischiensis_contig87.20258.1 ID=prot_S-ischiensis_contig87.20258.1|Name=mRNA_S-ischiensis_contig87.20258.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=83bp
AEVEVEAAGLRSKLEGFLTVPQASELMDRRPHPQREELADLRSRVGRLCS
SKSLVDSRERERAQERRKAFEALCKRVAALEKR
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mRNA from alignment at S-ischiensis_contig87:331440..332425-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig87.20258.1 ID=mRNA_S-ischiensis_contig87.20258.1|Name=mRNA_S-ischiensis_contig87.20258.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=986bp|location=Sequence derived from alignment at S-ischiensis_contig87:331440..332425- (Schizocladia ischiensis KU_0333)
GCGGAGGTGGAGGTGGAGGCGGCAGGCCTTCGCTCCAAGCTGGAGGGGTT
CTTGACGGTGCCACAGGCGTCCGAGCTGATGGACCGACGCCCCCACCCAC
AGCGGGAAGAGCTGGCTGATCTCCGCAGTAGGGTAGGCAGGTGAGGGGTG
AGGTCAGCGGGGACAGTATCAGTACAGAAACTGTACAGTAACAGTACAGG
ACTTCCCAAGCACAGCATGTATTCGGTACATGCTCCATGCCATCTCGCCG
GCGCAGCCCTCTCTAAGACCGACCGCTAAGAAGCCTATGCCGGTTCCCAT
TCGCGCCACGATTCCACGCTTGGAATGGTTAATTGTACGGTACTTGGTAG
TTGTGGGGAATGGCGCCCATGACTTTACTTTTCTGACTTGGAGTGGACAT
GCTGCCTGCTGCTCCGTACCATGTGTTTCGGATTGCTCTTGTTTGAACGA
GTCTCATACTTTGTATTCAAGTTCTATGCTGAGCTAATCACACTTTGAGG
TATCTACTGTACTGAGCTGTACAGTAGCCACACGTAGCTACAGTAGGAGC
ACCGTACAGTAGTGATAATCCGTATTGCATACGCGTTGGCTCATGTCGCC
TGGTAAACCATTTGCACCCAGTGGACTACGGCTTCCAGACGCGTATATGC
TGCAGTTTGGGCTCTGAACTGGATGGAACCGGTTCCAGTTTGGTGTTAAT
AGCGCCGGCAGCATAATGTGCACCCACAGACAATGCCAGTGCTGTGAAAC
CTTTGGCCGATTTTCGTATTTTACCGTGATCCCCCACCTTACTGTGCCCC
CATTCACGCACCCACCCCTCCCTCTTCTCCTTCTGCCCTACCCCCCATTC
CCTACATACTGTTGCAAACGTCCAGGCTGTGTTCGAGCAAGTCTCTGGTG
GACTCTCGGGAGCGTGAGAGGGCCCAGGAGCGCAGGAAGGCGTTTGAGGC
CTTGTGTAAGCGGGTGGCCGCTCTGGAGAAGAGGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig87:331440..332425-

>mRNA_S-ischiensis_contig87.20258.1 ID=mRNA_S-ischiensis_contig87.20258.1|Name=mRNA_S-ischiensis_contig87.20258.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=498bp|location=Sequence derived from alignment at S-ischiensis_contig87:331440..332425- (Schizocladia ischiensis KU_0333)
GCGGAGGTGGAGGTGGAGGCGGCAGGCCTTCGCTCCAAGCTGGAGGGGTT
CTTGACGGTGCCACAGGCGTCCGAGCTGATGGACCGACGCCCCCACCCAC
AGCGGGAAGAGCTGGCTGATCTCCGCAGTAGGGTAGGCAGGCGGAGGTGG
AGGTGGAGGCGGCAGGCCTTCGCTCCAAGCTGGAGGGGTTCTTGACGGTG
CCACAGGCGTCCGAGCTGATGGACCGACGCCCCCACCCACAGCGGGAAGA
GCTGGCTGATCTCCGCAGTAGGGTAGGCAGGCTGTGTTCGAGCAAGTCTC
TGGTGGACTCTCGGGAGCGTGAGAGGGCCCAGGAGCGCAGGAAGGCGTTT
GAGGCCTTGTGTAAGCGGGTGGCCGCTCTGGAGAAGAGGGCTGTGTTCGA
GCAAGTCTCTGGTGGACTCTCGGGAGCGTGAGAGGGCCCAGGAGCGCAGG
AAGGCGTTTGAGGCCTTGTGTAAGCGGGTGGCCGCTCTGGAGAAGAGG
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