mRNA_S-ischiensis_contig87.20256.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig87.20256.1
Unique NamemRNA_S-ischiensis_contig87.20256.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig87.20256.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig87contigS-ischiensis_contig87:321537..326209 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1334
Cds size1332
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig87.20256.1prot_S-ischiensis_contig87.20256.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig87 321539..326209 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817349.4267695-CDS-S-ischiensis_contig87:321538..3217741622817349.4267695-CDS-S-ischiensis_contig87:321538..321774Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 321539..321774 -
1695741047.1817532-CDS-S-ischiensis_contig87:321538..3217741695741047.1817532-CDS-S-ischiensis_contig87:321538..321774Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 321539..321774 -
1622817349.4371405-CDS-S-ischiensis_contig87:323919..3249251622817349.4371405-CDS-S-ischiensis_contig87:323919..324925Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 323920..324925 -
1695741047.1908991-CDS-S-ischiensis_contig87:323919..3249251695741047.1908991-CDS-S-ischiensis_contig87:323919..324925Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 323920..324925 -
1622817349.450777-CDS-S-ischiensis_contig87:326119..3262091622817349.450777-CDS-S-ischiensis_contig87:326119..326209Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 326120..326209 -
1695741047.2001696-CDS-S-ischiensis_contig87:326119..3262091695741047.2001696-CDS-S-ischiensis_contig87:326119..326209Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 326120..326209 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig87.20256.1

>prot_S-ischiensis_contig87.20256.1 ID=prot_S-ischiensis_contig87.20256.1|Name=mRNA_S-ischiensis_contig87.20256.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=444bp
GWWVERLGEQEDRVGAMEGTLEELLLWQSKVENALVRGAAQGATRPAPAA
TTTSGPRSLALPPTPAAAVTTSVCSRPGPRPESAAMSGSSGSVEDSEETA
RPGLGGRFEQGPTGSRHRRRLGQDSHSPGEPGRASGGHGRGQGRGPPGAG
DSPVVQTYGGAAAAAAEATAVLAAGAVGTGMGDLGSGSSESGVSRSVMLA
RHSPGGGDGGGGTWENNGRGDGHADLAGAFAAGAGMLEVPGEESWEHGGG
SGGGGGGDFTGELPSLAGQGEGHSSGGGNGAGQGSDYSRSTGAASRRNSE
QENVSPRPGGSADPDLYWQSGVPRPDHGRRGGPGSELEVEGDRPARGPVA
AAFNPGAGRYTLAFQGAGAVPPASAPPQATAVGPASPTRATRTAATPSSR
PGGGGSELGSPRAARARRGAGLPGPLDQANLGSGLPARAGGGRA
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mRNA from alignment at S-ischiensis_contig87:321537..326209-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig87.20256.1 ID=mRNA_S-ischiensis_contig87.20256.1|Name=mRNA_S-ischiensis_contig87.20256.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4673bp|location=Sequence derived from alignment at S-ischiensis_contig87:321537..326209- (Schizocladia ischiensis KU_0333)
GGTTGGTGGGTGGAGCGACTGGGGGAGCAGGAGGACCGGGTGGGGGCCAT
GGAGGGGACACTTGAAGAACTCCTGCTCTGGCAAAGCAAGGTGTGTATAT
ATGTATTTGTGCGAGTAGTCCTTCCTTCACTACTTGCCCCTACAGCGTGT
CATGTAGCAACTGATCAAGCACATCAAGTACCACAAGGCTTTCAAGTACT
TTGAAGTACGCGAGTTACAAGTTGCGTGCATATGTACTTGTACGAGTGGT
CCTTCCTTCACTACGTGCCCCTGCAGCATGTCATGTAGCAACTGATCAAG
CACATCCAAGTACCACAGTCCTTTGAAGTACAGTACATGAGTTCTGCTGT
CAGATAAGGGCCCAAACACCTCGGAGACTGGATGGCAAGTCTTCCACATA
CTGCTACTGTCACTACTGAGTAGAGATTGCCTCCCCTCTCAGTAACCATG
ACAAGGTGACACCCCCCGAGTCGTCGGTTGACATGCCCTGCAAGCTAACT
TTGGCATCTGGCACTGGCCAGGCAGCCCACACACAACACTGCCCCATCTT
CCCCAGGATTGTGCTACCCAGTAACTAGCAATGCCCTCGGTAGTCGCCTA
TCCGAACCCATATGACCTTGCAACCCTACTTGTCGCTGACTGAGCACTGC
AGTTAGGTTGCAATACCCATCTAGGCATGGTGTGACAGTCATGAACGCCA
GTGGGAAATTCAAAGGCAGAGTGGAGCTACTGCTAACCATGAAGGCTGCA
GTACTTCATTGACCATAGACGGGAGCGACGGTCCGCACTGCGCGAGTGCT
ACTGTAGATACCACTCTGATATCCCAAGGGCGGTAGTGTTTTGTTTCGTA
CTTTGGCCTAGGTATACCTGTACTCGTACCATAGTATTAGAAAATACCTA
TTGGACGCACTCGCACTTGGAAATGTACTTCCAAGTACCAACTTCCGGGG
AGGAAGTACCCTACAAATATGGTTCCCTGTTTTAACTACACTTTGCTGTG
CGACTGCACGCTACCAAGTCCTCCCGAGGGTTCCGTACTTCAACCAGTAT
GAAAAATGCGCCAAGTTCTCGTGGATCAAACACGGCTTCGCAGGAGTTGC
GGACAACGTTGTCATTTGTGTTATGCGATGAGAATCTTCCTTGATGCTGA
GTTGTGGGTTGTGCGGCAAAGACTGGCCGGTACTAATACAATCATTTGTC
TGACCCAGCTATGAACGGCGCTAGCCAGTAGTGCCCAGCTGACCGTTCCA
TGCAACCCTCGCACCCCGGGCATACCCACCTCAGGTAGAAAACGCTCTGG
TCCGTGGCGCAGCCCAAGGTGCAACCAGACCCGCCCCCGCCGCCACAACC
ACCTCAGGGCCCAGGTCACTGGCATTGCCGCCGACCCCTGCCGCAGCGGT
CACGACGTCCGTCTGTTCCCGTCCCGGGCCCCGCCCCGAGTCTGCCGCGA
TGTCTGGGTCCTCAGGGTCAGTGGAAGACTCGGAAGAAACGGCTCGACCG
GGACTCGGAGGCCGCTTTGAGCAGGGCCCCACCGGGAGCCGCCACCGCCG
CCGGCTCGGTCAGGACAGCCACAGCCCAGGGGAGCCCGGACGCGCCAGCG
GGGGCCACGGCCGGGGCCAGGGCCGGGGCCCACCGGGGGCAGGTGATTCA
CCCGTGGTCCAGACTTACGGGGGAGCCGCGGCGGCCGCGGCGGAGGCAAC
GGCTGTGCTGGCTGCAGGGGCGGTGGGCACTGGCATGGGGGACCTGGGCT
CCGGATCCTCTGAGTCTGGTGTCAGCCGGAGTGTGATGCTTGCCAGACAC
AGCCCGGGTGGCGGCGATGGGGGCGGCGGTACTTGGGAAAACAATGGCCG
TGGGGATGGCCACGCTGACCTGGCTGGTGCCTTCGCGGCCGGCGCCGGCA
TGCTCGAAGTACCCGGGGAGGAGAGCTGGGAGCACGGCGGCGGCAGTGGC
GGCGGCGGCGGTGGCGACTTCACTGGGGAGCTGCCGTCACTGGCAGGGCA
AGGCGAGGGTCACAGCAGCGGTGGTGGGAACGGTGCCGGCCAAGGCAGTG
ACTACTCTAGGTCTACGGGCGCGGCCAGCCGGAGGAACTCAGAGCAGGAA
AACGTGAGCCCCAGGCCGGGGGGCAGTGCAGACCCGGATCTCTACTGGCA
ATCTGGAGTGCCCAGACCCGACCATGGAAGGCGTGGAGGGCCCGGGAGCG
AACTTGAAGTTGAAGGGGATCGCCCGGCAAGGGGGCCGGTGGCGGCCGCA
TTCAACCCCGGGGCAGGGCGATATACACTTGCCTTCCAAGGTGCGACAGT
ATCCCTGTATAAGTTATACCGTTTCGTGTGCTGTCTGTGTGCGCGCGCAC
TTGCTTGTGAGGTACACTATTGATTGAGAGGAACCTGAAACCGACAATAC
CGTGGCCGGTGCTTCACCCATGTTATAGCTCGTGTTGACTACCGTAGGGA
CGAATAAGAGTTTGTAGGCGACCCGCCAGCCTGGGTCTGATGATCGCTGG
CACTTGAACCCGAGGAACTGAATACTGCCCTTCGCTTCTGTCGTGAGCAC
ACAGACTGACCCCCAGAGCCGACAAGTCATGACGCCCGTATCCTTTGCCC
GCTTCAACCCCAGCTGGAACATTCCGGCTCCACCTGCGGCTCACTCTAAC
CCGAACACTACCGTGACCTGTATCTCTTAGTTGCGAGCCAAGCGTACCAC
GTGGAGCAGGGTGGAATGTGCGAAGTGCAGCGTAGCTACTTCCTTCATGA
CCCGGGTGTTGGGTTCCGGTCGATCGGCTCCCCTTTGCTGTCCGGCCGTG
CCTGCCGATCGGGGAGCTAGCTGGCTGGCTTGCTGGCTGTTGTCGACCCG
GGCTTAGCCGCTCCTTACTTTTGACGAAGAAGTGGTTACAATCGTGGCCG
TGAAATCAGGTGGATGTCGCCGTTGCAGGATGGTGAATCAAGCAACCCGA
TGAAACATGTGCCAGCATCCCGAGGTCGGCCACACCGAACAGAGCCCTGC
CCGCCGCGAATTCGAGAAGAGCGGTTGGTGGAGCTCTGTAGCACAGGCGG
GCCCCTTCCGTTGACCCTTGCGTTATCTAGACTGCACACGGTGTCCTAAC
AGAGAGCGTTGCCTCAGGCGGGTGGCGGGGGGGCGATGGGCTGGCATCGT
GTGGGCGTCTCCTGGGCAGGGCGTGGTGCAATGGGGGGCGGGCGGCTGCA
CTAGTGTACGACATGTCCCTTGCCCTTTTCCCGTTCGCGCTAGCCGGCGT
GATCGGGCAATGTGGCGATTTCACGAAAATTTGTGTTTTTTGCCGCTTGA
AACATGTGCAGGGGTTAAAGATGCTACTCTACATAGAAGCACTGTACAGT
ATTTATGGTACTTCCAAGTATGTGGAAGCGGCCGGGGTTCATCACAGTGC
GGTGGTCAACCGTCCTTCCACCAAGCACGGCCCGGCAACCCAGGCTGTTG
CCAATATGGCTGCATGAGTGGGATTGTTACTTGGGTGGTTGTTGGGCCGT
GATGTAGCAAACCTATGTCGCCAGGTCCGCCACGGCCATCCGCGTGCAGT
TTTCAACATGGCAAAAACGGGCCGGTCTTTTTCGTCGGGTGCATTTGTTG
CGTGTTTCTGTTTTTCTTTGCATCATACGGTGTTGGCATTGTCATGACGG
CACTTTTGTTGTTAGCAAGGCACGCCTGGTGCAAAGCACTGAACGGGACC
ACGAAGAGTTGATGCACGCACTCTGCCCAGACAAGGCACGGTCGGCCGGC
ACATGCTCCCGATCGATGCAGCGGAAATGGGCGGTGCTTTCGTCAGAAGT
GCGCAAGTACGCTCGACGGTGCCCACGCCTCATGCCCCGTGCCCTCGTGG
CTGCTTCCAAGCTAGCCATTTGTGCCGCCACCCCGCTCTGAAAAATGCCC
GGCAGCCTAGGCCTGAATTTTCAGCTGTGCCAGGCTGGGGGCCGCCCAAG
ATTCCCCAACGGCATTAGTGGCAAAAAAAACTCGCTGCACAATCGTAGAG
GTCTATAAGTGCGCCAGCGGAAAGTGACCGCTTAAAACTGCCAAAGTGTT
TCATTGAGGGTGCTATATCAGTGACAAACATAACAAAGAGAGGCCTTAGC
AGTTTTTTTTGCTGCAGTACCTCGATAATTTGGCGGCAGGTACATGTACC
TATGCCGAAGCGCGAGCTTCTCACGATAGTGATCCATATCTCCGATTATC
CTTAGCCTTGACCCTAATAGCCTCCTCGACCTTCACCAATGTTCCCTCTC
GCCCTCCCCCTACACCCAACCTCACTGATAAGGTCAGTACTGAGTACGAG
CACTCAGTAGTCGTTTAGCCTTGACCCCCCCCACTACTGTTGTACTTCGT
ATGCTGGCCTATTGAACCCAAACCCTGAGCCCTACACACAACCCGGGCCC
CAACCCTGCCCCGGCGACTGCATCCGCATTGGCAGGCGCCGGCGCCGTGC
CCCCCGCCAGTGCACCACCGCAAGCAACCGCAGTGGGACCAGCTTCCCCA
ACACGAGCCACCCGGACAGCGGCTACCCCCAGCTCAAGGCCCGGCGGTGG
TGGCTCCGAGTTGGGCTCGCCCCGGGCGGCCCGGGCCCGGCGCGGGGCGG
GGCTGCCGGGCCCACTGGACCAGGCGAACTTGGGCTCAGGCTTGCCGGCC
CGGGCGGGGGGGGGGCGGGCCGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig87:321537..326209-

>mRNA_S-ischiensis_contig87.20256.1 ID=mRNA_S-ischiensis_contig87.20256.1|Name=mRNA_S-ischiensis_contig87.20256.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2664bp|location=Sequence derived from alignment at S-ischiensis_contig87:321537..326209- (Schizocladia ischiensis KU_0333)
GGTTGGTGGGTGGAGCGACTGGGGGAGCAGGAGGACCGGGTGGGGGCCAT
GGAGGGGACACTTGAAGAACTCCTGCTCTGGCAAAGCAAGGGTTGGTGGG
TGGAGCGACTGGGGGAGCAGGAGGACCGGGTGGGGGCCATGGAGGGGACA
CTTGAAGAACTCCTGCTCTGGCAAAGCAAGGTAGAAAACGCTCTGGTCCG
TGGCGCAGCCCAAGGTGCAACCAGACCCGCCCCCGCCGCCACAACCACCT
CAGGGCCCAGGTCACTGGCATTGCCGCCGACCCCTGCCGCAGCGGTCACG
ACGTCCGTCTGTTCCCGTCCCGGGCCCCGCCCCGAGTCTGCCGCGATGTC
TGGGTCCTCAGGGTCAGTGGAAGACTCGGAAGAAACGGCTCGACCGGGAC
TCGGAGGCCGCTTTGAGCAGGGCCCCACCGGGAGCCGCCACCGCCGCCGG
CTCGGTCAGGACAGCCACAGCCCAGGGGAGCCCGGACGCGCCAGCGGGGG
CCACGGCCGGGGCCAGGGCCGGGGCCCACCGGGGGCAGGTGATTCACCCG
TGGTCCAGACTTACGGGGGAGCCGCGGCGGCCGCGGCGGAGGCAACGGCT
GTGCTGGCTGCAGGGGCGGTGGGCACTGGCATGGGGGACCTGGGCTCCGG
ATCCTCTGAGTCTGGTGTCAGCCGGAGTGTGATGCTTGCCAGACACAGCC
CGGGTGGCGGCGATGGGGGCGGCGGTACTTGGGAAAACAATGGCCGTGGG
GATGGCCACGCTGACCTGGCTGGTGCCTTCGCGGCCGGCGCCGGCATGCT
CGAAGTACCCGGGGAGGAGAGCTGGGAGCACGGCGGCGGCAGTGGCGGCG
GCGGCGGTGGCGACTTCACTGGGGAGCTGCCGTCACTGGCAGGGCAAGGC
GAGGGTCACAGCAGCGGTGGTGGGAACGGTGCCGGCCAAGGCAGTGACTA
CTCTAGGTCTACGGGCGCGGCCAGCCGGAGGAACTCAGAGCAGGAAAACG
TGAGCCCCAGGCCGGGGGGCAGTGCAGACCCGGATCTCTACTGGCAATCT
GGAGTGCCCAGACCCGACCATGGAAGGCGTGGAGGGCCCGGGAGCGAACT
TGAAGTTGAAGGGGATCGCCCGGCAAGGGGGCCGGTGGCGGCCGCATTCA
ACCCCGGGGCAGGGCGATATACACTTGCCTTCCAAGGTAGAAAACGCTCT
GGTCCGTGGCGCAGCCCAAGGTGCAACCAGACCCGCCCCCGCCGCCACAA
CCACCTCAGGGCCCAGGTCACTGGCATTGCCGCCGACCCCTGCCGCAGCG
GTCACGACGTCCGTCTGTTCCCGTCCCGGGCCCCGCCCCGAGTCTGCCGC
GATGTCTGGGTCCTCAGGGTCAGTGGAAGACTCGGAAGAAACGGCTCGAC
CGGGACTCGGAGGCCGCTTTGAGCAGGGCCCCACCGGGAGCCGCCACCGC
CGCCGGCTCGGTCAGGACAGCCACAGCCCAGGGGAGCCCGGACGCGCCAG
CGGGGGCCACGGCCGGGGCCAGGGCCGGGGCCCACCGGGGGCAGGTGATT
CACCCGTGGTCCAGACTTACGGGGGAGCCGCGGCGGCCGCGGCGGAGGCA
ACGGCTGTGCTGGCTGCAGGGGCGGTGGGCACTGGCATGGGGGACCTGGG
CTCCGGATCCTCTGAGTCTGGTGTCAGCCGGAGTGTGATGCTTGCCAGAC
ACAGCCCGGGTGGCGGCGATGGGGGCGGCGGTACTTGGGAAAACAATGGC
CGTGGGGATGGCCACGCTGACCTGGCTGGTGCCTTCGCGGCCGGCGCCGG
CATGCTCGAAGTACCCGGGGAGGAGAGCTGGGAGCACGGCGGCGGCAGTG
GCGGCGGCGGCGGTGGCGACTTCACTGGGGAGCTGCCGTCACTGGCAGGG
CAAGGCGAGGGTCACAGCAGCGGTGGTGGGAACGGTGCCGGCCAAGGCAG
TGACTACTCTAGGTCTACGGGCGCGGCCAGCCGGAGGAACTCAGAGCAGG
AAAACGTGAGCCCCAGGCCGGGGGGCAGTGCAGACCCGGATCTCTACTGG
CAATCTGGAGTGCCCAGACCCGACCATGGAAGGCGTGGAGGGCCCGGGAG
CGAACTTGAAGTTGAAGGGGATCGCCCGGCAAGGGGGCCGGTGGCGGCCG
CATTCAACCCCGGGGCAGGGCGATATACACTTGCCTTCCAAGGCGCCGGC
GCCGTGCCCCCCGCCAGTGCACCACCGCAAGCAACCGCAGTGGGACCAGC
TTCCCCAACACGAGCCACCCGGACAGCGGCTACCCCCAGCTCAAGGCCCG
GCGGTGGTGGCTCCGAGTTGGGCTCGCCCCGGGCGGCCCGGGCCCGGCGC
GGGGCGGGGCTGCCGGGCCCACTGGACCAGGCGAACTTGGGCTCAGGCTT
GCCGGCCCGGGCGGGGGGGGGGCGGGCCGCGCCGGCGCCGTGCCCCCCGC
CAGTGCACCACCGCAAGCAACCGCAGTGGGACCAGCTTCCCCAACACGAG
CCACCCGGACAGCGGCTACCCCCAGCTCAAGGCCCGGCGGTGGTGGCTCC
GAGTTGGGCTCGCCCCGGGCGGCCCGGGCCCGGCGCGGGGCGGGGCTGCC
GGGCCCACTGGACCAGGCGAACTTGGGCTCAGGCTTGCCGGCCCGGGCGG
GGGGGGGGCGGGCC
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