mRNA_S-ischiensis_contig87.20252.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig87.20252.1
Unique NamemRNA_S-ischiensis_contig87.20252.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig87.20252.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig87contigS-ischiensis_contig87:267334..267771 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size438
Cds size312
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig87.20252.1prot_S-ischiensis_contig87.20252.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig87 267337..267648 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817350.7523742-UTR-S-ischiensis_contig87:267333..2673361622817350.7523742-UTR-S-ischiensis_contig87:267333..267336Schizocladia ischiensis KU_0333UTRS-ischiensis_contig87 267334..267336 +
1695741048.0635197-UTR-S-ischiensis_contig87:267333..2673361695741048.0635197-UTR-S-ischiensis_contig87:267333..267336Schizocladia ischiensis KU_0333UTRS-ischiensis_contig87 267334..267336 +
1622817350.775288-UTR-S-ischiensis_contig87:267648..2677711622817350.775288-UTR-S-ischiensis_contig87:267648..267771Schizocladia ischiensis KU_0333UTRS-ischiensis_contig87 267649..267771 +
1695741048.0860927-UTR-S-ischiensis_contig87:267648..2677711695741048.0860927-UTR-S-ischiensis_contig87:267648..267771Schizocladia ischiensis KU_0333UTRS-ischiensis_contig87 267649..267771 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817350.7642763-CDS-S-ischiensis_contig87:267336..2676481622817350.7642763-CDS-S-ischiensis_contig87:267336..267648Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 267337..267648 +
1695741048.0748694-CDS-S-ischiensis_contig87:267336..2676481695741048.0748694-CDS-S-ischiensis_contig87:267336..267648Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 267337..267648 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig87.20252.1

>prot_S-ischiensis_contig87.20252.1 ID=prot_S-ischiensis_contig87.20252.1|Name=mRNA_S-ischiensis_contig87.20252.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=104bp
MPIITVGVKHKGVVHHGTAHQRCMCLPAGCGFKQSDLDILLHARPGRRVP
SYSLNRGYKTPPHIYQTRRKCSKVLESFPNKQYRAMHCNTRVLPSFEPTI
DLL*
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mRNA from alignment at S-ischiensis_contig87:267334..267771+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig87.20252.1 ID=mRNA_S-ischiensis_contig87.20252.1|Name=mRNA_S-ischiensis_contig87.20252.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=438bp|location=Sequence derived from alignment at S-ischiensis_contig87:267334..267771+ (Schizocladia ischiensis KU_0333)
CTGATGCCAATCATCACTGTTGGGGTCAAGCACAAGGGCGTTGTGCACCA
CGGCACCGCCCATCAACGCTGTATGTGCCTCCCAGCAGGGTGTGGTTTCA
AGCAGAGTGACTTAGATATACTCCTGCATGCACGCCCTGGACGGCGTGTG
CCTTCTTATAGCTTGAACCGCGGCTACAAAACGCCTCCGCATATCTACCA
AACTCGCCGTAAGTGCTCCAAAGTACTCGAGTCTTTCCCAAACAAACAGT
ACCGTGCAATGCACTGTAACACAAGGGTGCTCCCCTCCTTTGAGCCTACA
ATCGACCTACTGTAATGTCGAGTCGCACTGCCATAAAGCTTGACAGTTAG
GTTGCCAGTGCCGGCTCAGGCGGCATAGTCGAAGCATAATCAGAGCGCGA
AAGCATAGCCGGCTTCTTTCCAGTGCAGTCATCGGAGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig87:267334..267771+

>mRNA_S-ischiensis_contig87.20252.1 ID=mRNA_S-ischiensis_contig87.20252.1|Name=mRNA_S-ischiensis_contig87.20252.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=624bp|location=Sequence derived from alignment at S-ischiensis_contig87:267334..267771+ (Schizocladia ischiensis KU_0333)
ATGCCAATCATCACTGTTGGGGTCAAGCACAAGGGCGTTGTGCACCACGG
CACCGCCCATCAACGCTGTATGTGCCTCCCAGCAGGGTGTGGTTTCAAGC
AGAGTGACTTAGATATACTCCTGCATGCACGCCCTGGACGGCGTGTGCCT
TCTTATAGCTTGAACCGCGGCTACAAAACGCCTCCGCATATCTACCAAAC
TCGCCGTAAGTGCTCCAAAGTACTCGAGTCTTTCCCAAACAAACAGTACC
GTGCAATGCACTGTAACACAAGGGTGCTCCCCTCCTTTGAGCCTACAATC
GACCTACTGTAAATGCCAATCATCACTGTTGGGGTCAAGCACAAGGGCGT
TGTGCACCACGGCACCGCCCATCAACGCTGTATGTGCCTCCCAGCAGGGT
GTGGTTTCAAGCAGAGTGACTTAGATATACTCCTGCATGCACGCCCTGGA
CGGCGTGTGCCTTCTTATAGCTTGAACCGCGGCTACAAAACGCCTCCGCA
TATCTACCAAACTCGCCGTAAGTGCTCCAAAGTACTCGAGTCTTTCCCAA
ACAAACAGTACCGTGCAATGCACTGTAACACAAGGGTGCTCCCCTCCTTT
GAGCCTACAATCGACCTACTGTAA
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