mRNA_S-ischiensis_contig87.20250.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig87.20250.1
Unique NamemRNA_S-ischiensis_contig87.20250.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig87.20250.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig87contigS-ischiensis_contig87:256170..257802 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size551
Cds size549
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817349.2469587-CDS-S-ischiensis_contig87:256169..2566321622817349.2469587-CDS-S-ischiensis_contig87:256169..256632Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 256170..256632 -
1695741047.0748286-CDS-S-ischiensis_contig87:256169..2566321695741047.0748286-CDS-S-ischiensis_contig87:256169..256632Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 256170..256632 -
1622817349.2585096-CDS-S-ischiensis_contig87:257716..2578021622817349.2585096-CDS-S-ischiensis_contig87:257716..257802Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 257717..257802 -
1695741047.084943-CDS-S-ischiensis_contig87:257716..2578021695741047.084943-CDS-S-ischiensis_contig87:257716..257802Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 257717..257802 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig87.20250.1prot_S-ischiensis_contig87.20250.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig87 256170..257802 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig87.20250.1

>prot_S-ischiensis_contig87.20250.1 ID=prot_S-ischiensis_contig87.20250.1|Name=mRNA_S-ischiensis_contig87.20250.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=183bp
MNGHGHERERGDWQEGAEPDGARDWDAQRYQPHPKSPHARGGGCGPGPDP
HLPEKHLPEKEGRGRAGSDADSHTGGGGGGGGSSGRGRPRTGSGDHSARV
SPSHAHATQGRASDHAALRKGQAGPSPPRPQHPPPPALQQQLKGQTAFMG
GTGSGTLGVAAAAAAGPAAPALARPRGWGQNAG
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mRNA from alignment at S-ischiensis_contig87:256170..257802-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig87.20250.1 ID=mRNA_S-ischiensis_contig87.20250.1|Name=mRNA_S-ischiensis_contig87.20250.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1633bp|location=Sequence derived from alignment at S-ischiensis_contig87:256170..257802- (Schizocladia ischiensis KU_0333)
ATGAACGGGCACGGGCACGAGAGGGAGAGGGGGGATTGGCAGGAAGGGGC
TGAGCCGGATGGGGCGCGGGACTGGGACGCCCAGAGGTGAGAGATGTTGT
CCTTTGGGATCACAGTTGCGTATGTACTGGGATTCGAGAGCCCATGGCTA
CTGTAAATAGTTACTCCTGGCGGAGGGCAAACCCCAAGTTTCAACTTGGG
GCTGTCAGCAGTGCACACCACAATAGGCTATGCCGCAAGACAAGTACGGT
ACTGTACGCCAATGAGTACAGTACATACGCAAGAGTTATTCTTCGGTAGA
TGCCTTCGGTACGCGCCTTGGCCCACCTCGGTCCAGGCACGCGGTCAATG
GTCTCGAGGCAATTCTAGGGCCAGCTGATGACAAGGTGACAAGTGACAAG
TGCTTGGAAGTGCCCAATGCCACACTGCGTCCCACACTTACTATGTACTC
GAGTAGAGTAGCTACTGCTTCCCACACTTACTAGAGTAGAGCAAATCCAA
TCAGCCGCAGGTCCCCCGGCGGAGCCCGCCTAAATACTGTGCTGTACTTC
CGGATACTTTCAAGTTTGAGAATCTGTGTTTGCAATATGCATATTTTAAT
GCATTGGCTTATGACGCCTGGCAAGTTATACCGATCGAGGCGTAGGTACT
ACAGTAGTTTAAAGTGCTGTGGGTTTTGGGCGGAAGCAGGCATTATCATG
TCACAAGTGTGCTTCTAAGTGCTTCGGGCACTGTCTAAGTACTGTATGAG
TACTTTCCAAGTAGTATGCTTATTCTGCACAAGTACTCCTACAAGTACTT
TCTGAGCACTTCTATGGGACTACTGTATCGAAGTACTGTACGAGTACTTT
TTATGTACTTGTATGAGTACTTTATACGCACTTGTACGAGTACTTTCGAG
TGCCTGTACGGATTCTTTGTACTTTCTAGTATGACAAGTACCGTGTTGCA
CACCCCGCAAGTGCTTGCCTCTCCTGGGTTGAGGCCGCAGTCGGCTTGGG
ATTTGCTATCTGACCAGTTGCTACTCTACCACGAGTAGGTGTCCCGCCCT
GTCTAACGGAAGCCTGGACCCGTGCGCTGCACCGTAATTCCCCCCATCCT
CCTCCAATGGTTGACACCCCCTTTTTTTCTTACCTACCCTGCTCTCTCTT
TGGTCGATGTACACTATCAGATACCAGCCCCACCCCAAGAGCCCCCACGC
CCGCGGCGGCGGGTGTGGCCCAGGACCGGACCCGCACTTGCCTGAGAAAC
ACTTGCCAGAGAAAGAGGGCCGCGGGCGGGCGGGCAGCGACGCGGATTCC
CACACCGGCGGGGGAGGCGGTGGTGGCGGCAGCAGTGGCCGTGGCCGTCC
TCGCACGGGCAGCGGGGACCACTCTGCCCGGGTCAGCCCCAGCCACGCGC
ACGCCACCCAAGGCCGTGCCTCTGACCACGCCGCCCTCCGCAAGGGCCAA
GCCGGGCCCAGCCCGCCCCGGCCCCAACACCCGCCGCCGCCGGCGCTGCA
GCAGCAGCTCAAGGGACAGACCGCGTTCATGGGCGGCACGGGTTCTGGGA
CACTCGGGGTGGCGGCGGCGGCAGCAGCAGGGCCTGCGGCGCCTGCGCTG
GCTCGGCCACGGGGGTGGGGCCAAAACGCGGGT
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Coding sequence (CDS) from alignment at S-ischiensis_contig87:256170..257802-

>mRNA_S-ischiensis_contig87.20250.1 ID=mRNA_S-ischiensis_contig87.20250.1|Name=mRNA_S-ischiensis_contig87.20250.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1098bp|location=Sequence derived from alignment at S-ischiensis_contig87:256170..257802- (Schizocladia ischiensis KU_0333)
ATGAACGGGCACGGGCACGAGAGGGAGAGGGGGGATTGGCAGGAAGGGGC
TGAGCCGGATGGGGCGCGGGACTGGGACGCCCAGAGATGAACGGGCACGG
GCACGAGAGGGAGAGGGGGGATTGGCAGGAAGGGGCTGAGCCGGATGGGG
CGCGGGACTGGGACGCCCAGAGATACCAGCCCCACCCCAAGAGCCCCCAC
GCCCGCGGCGGCGGGTGTGGCCCAGGACCGGACCCGCACTTGCCTGAGAA
ACACTTGCCAGAGAAAGAGGGCCGCGGGCGGGCGGGCAGCGACGCGGATT
CCCACACCGGCGGGGGAGGCGGTGGTGGCGGCAGCAGTGGCCGTGGCCGT
CCTCGCACGGGCAGCGGGGACCACTCTGCCCGGGTCAGCCCCAGCCACGC
GCACGCCACCCAAGGCCGTGCCTCTGACCACGCCGCCCTCCGCAAGGGCC
AAGCCGGGCCCAGCCCGCCCCGGCCCCAACACCCGCCGCCGCCGGCGCTG
CAGCAGCAGCTCAAGGGACAGACCGCGTTCATGGGCGGCACGGGTTCTGG
GACACTCGGGGTGGCGGCGGCGGCAGCAGCAGGGCCTGCGGCGCCTGCGC
TGGCTCGGCCACGGGGGTGGGGCCAAAACGCGGGTATACCAGCCCCACCC
CAAGAGCCCCCACGCCCGCGGCGGCGGGTGTGGCCCAGGACCGGACCCGC
ACTTGCCTGAGAAACACTTGCCAGAGAAAGAGGGCCGCGGGCGGGCGGGC
AGCGACGCGGATTCCCACACCGGCGGGGGAGGCGGTGGTGGCGGCAGCAG
TGGCCGTGGCCGTCCTCGCACGGGCAGCGGGGACCACTCTGCCCGGGTCA
GCCCCAGCCACGCGCACGCCACCCAAGGCCGTGCCTCTGACCACGCCGCC
CTCCGCAAGGGCCAAGCCGGGCCCAGCCCGCCCCGGCCCCAACACCCGCC
GCCGCCGGCGCTGCAGCAGCAGCTCAAGGGACAGACCGCGTTCATGGGCG
GCACGGGTTCTGGGACACTCGGGGTGGCGGCGGCGGCAGCAGCAGGGCCT
GCGGCGCCTGCGCTGGCTCGGCCACGGGGGTGGGGCCAAAACGCGGGT
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