mRNA_S-ischiensis_contig87.20243.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig87.20243.1 vs. uniprot
Match: A0A835YN91_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN91_9STRA) HSP 1 Score: 180 bits (456), Expect = 8.180e-52 Identity = 96/122 (78.69%), Postives = 100/122 (81.97%), Query Frame = 1
Query: 7 VGVPSLAAQGNFLEAINVTLNVLEKHYMDRDLARSGNSIVMISASSGVFEVDAGLAGITKQRMMDNGIGMDMVSLSQPPLHTAPLFIYKSKSLAYE--RR-----------YEVPHWMNLGF 333
VGVPS AAQGNFLEAINVTLNVLEKHYMDRDL+RSGNSIV +SAS+GVFEVDA LAGITKQRMMDNGIGMDMVSLSQPPLHTAPLFIY +L E RR YEVPHWMNL F
Sbjct: 349 VGVPSYAAQGNFLEAINVTLNVLEKHYMDRDLSRSGNSIVALSASTGVFEVDARLAGITKQRMMDNGIGMDMVSLSQPPLHTAPLFIYMGGTLDEEADRRSVEAALNAEAVYEVPHWMNLSF 470
BLAST of mRNA_S-ischiensis_contig87.20243.1 vs. uniprot
Match: A0A7S2XST9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XST9_9STRA) HSP 1 Score: 156 bits (395), Expect = 1.710e-45 Identity = 80/143 (55.94%), Postives = 99/143 (69.23%), Query Frame = 1
Query: 13 VPSLAAQGNFLEAINVTLNVLEKHYMDRDLARSGNSIVMISASSGVFEVDAGLAGITKQRMMDNGIGMDMVSLSQPPLHTAPLFIYKSKSLAYE----------RRYEVPHWMNLGFASAPDRDGHARDQNLYDAPPSYTGNP 411
VPS A QGN LEAINVTLN+L+ HYMDRDL R+GNS+++++A SGVFEVD GLAGITKQRMMDNGIG DM+SL PPLH AP F+YK +S +E + +E+PHWM+L FA+ H +N S+ NP
Sbjct: 11 VPSTALQGNLLEAINVTLNLLQLHYMDRDLRRTGNSLMVVTAGSGVFEVDKGLAGITKQRMMDNGIGSDMLSLGLPPLHVAPFFLYKEESETHEDEKQGFEDWKQYFELPHWMHLSFANYDHERDHP--ENAQKKKASHLSNP 151
BLAST of mRNA_S-ischiensis_contig87.20243.1 vs. uniprot
Match: A0A8J2SFD8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SFD8_9STRA) HSP 1 Score: 154 bits (388), Expect = 1.960e-40 Identity = 76/113 (67.26%), Postives = 90/113 (79.65%), Query Frame = 1
Query: 25 AAQGNFLEAINVTLNVLEKHYMDRDLARSGNSIVMISASSGVFEVDAGLAGITKQRMMDNGIGMDMVSLSQPPLHTAPLFIYKSKSLAYERRYEVPHWMNLGFASAPDRDGHA 363
AA GN LEAIN+TLNVLEKHYMDRD+ R+GNSIV+ISA SGVF VDA LA +TKQRMMDNGIGMDM+SL+ PPLHTAP+F+++ + YEVPHW+NL F P+R A
Sbjct: 325 AADGNVLEAINLTLNVLEKHYMDRDVQRTGNSIVLISAGSGVFAVDARLARVTKQRMMDNGIGMDMLSLAVPPLHTAPIFMHRGINNTKATAYEVPHWINLSFVD-PERAADA 436
BLAST of mRNA_S-ischiensis_contig87.20243.1 vs. uniprot
Match: K0TPQ1_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TPQ1_THAOC) HSP 1 Score: 153 bits (387), Expect = 2.720e-40 Identity = 76/140 (54.29%), Postives = 99/140 (70.71%), Query Frame = 1
Query: 16 PSLAAQGNFLEAINVTLNVLEKHYMDRDLARSGNSIVMISASSGVFEVDAGLAGITKQRMMDNGIGMDMVSLSQPPLHTAPLFIYKSKSLA------------YERRYEVPHWMNLGFASAPDRDGHA---RDQNLYDAP 390
PS A+QGN LEAIN+TLN+L HY+DRDL R+GNSIV+I+ +GVFE++ LAGITKQRMMDNGIG DM+SLS PPLH AP F+YK K++A ++ +EVPHWMNL F + D R++N+++ P
Sbjct: 1003 PSTASQGNILEAINITLNLLHLHYIDRDLHRTGNSIVIITPGNGVFEIEKNLAGITKQRMMDNGIGSDMLSLSLPPLHVAPFFLYKEKNVASNTEEERTGFDEWKTYFEVPHWMNLSFVDYDNEDQEPTLYREKNIHEDP 1142
BLAST of mRNA_S-ischiensis_contig87.20243.1 vs. uniprot
Match: A0A1Z5JA99_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JA99_FISSO) HSP 1 Score: 151 bits (382), Expect = 1.260e-39 Identity = 81/126 (64.29%), Postives = 92/126 (73.02%), Query Frame = 1
Query: 16 PSLAAQGNFLEAINVTLNVLEKHYMDRDLARSGNSIVMISASSGVFEVDAGLAGITKQRMMDNGIGMDMVSLSQPPLHTAPLFIYKSKSL--------AYERRYEVPHWMNLGFASAP-DRDGHAR 366
PS A+QGN LEAINVTLN+L+ HY+DRDL R+GNSIV+ISA +GVFEVD GLAGI+ QRMMDNGIG DM+SL PPLHTAP F+Y + E YEVPHWMNL FAS D DG R
Sbjct: 657 PSSASQGNVLEAINVTLNLLQYHYLDRDLHRTGNSIVVISAGNGVFEVDKGLAGISYQRMMDNGIGSDMLSLGLPPLHTAPFFLYVNLYQDVDPENVDGSETFYEVPHWMNLSFASYDGDSDGLGR 782
BLAST of mRNA_S-ischiensis_contig87.20243.1 vs. uniprot
Match: K8YTK9_NANGC (Dep domain containing 5 n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YTK9_NANGC) HSP 1 Score: 150 bits (380), Expect = 2.370e-39 Identity = 75/111 (67.57%), Postives = 92/111 (82.88%), Query Frame = 1
Query: 10 GVPSLAAQGNFLEAINVTLNVLEKHYMDRDLARSGNSIVMISASSGVFEVDAGLAGITKQRMMDNGIGMDMVSLSQPPLHTAPLFIYKSKSLAYERR---YEVPHWMNLGF 333
GVP+ AA+GNFLEAINVTLNVLEKHYMDRDL R+GNSI+MIS S+G+ EVD+ L+ ITKQRMMD+GIGMD++SL+QPPLH PLFI + K ER +EVPHWM++ +
Sbjct: 229 GVPAKAARGNFLEAINVTLNVLEKHYMDRDLTRTGNSILMISPSTGIIEVDSKLSDITKQRMMDDGIGMDLLSLAQPPLHIVPLFICRDK-FNTERDSSLFEVPHWMHISY 338
BLAST of mRNA_S-ischiensis_contig87.20243.1 vs. uniprot
Match: W7T8Z9_9STRA (Dep domain containing protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T8Z9_9STRA) HSP 1 Score: 150 bits (380), Expect = 2.380e-39 Identity = 75/111 (67.57%), Postives = 92/111 (82.88%), Query Frame = 1
Query: 10 GVPSLAAQGNFLEAINVTLNVLEKHYMDRDLARSGNSIVMISASSGVFEVDAGLAGITKQRMMDNGIGMDMVSLSQPPLHTAPLFIYKSKSLAYERR---YEVPHWMNLGF 333
GVP+ AA+GNFLEAINVTLNVLEKHYMDRDL R+GNSI+MIS S+G+ EVD+ L+ ITKQRMMD+GIGMD++SL+QPPLH PLFI + K ER +EVPHWM++ +
Sbjct: 416 GVPAKAARGNFLEAINVTLNVLEKHYMDRDLTRTGNSILMISPSTGIIEVDSKLSDITKQRMMDDGIGMDLLSLAQPPLHIVPLFICRDK-FNTERDSSLFEVPHWMHISY 525
BLAST of mRNA_S-ischiensis_contig87.20243.1 vs. uniprot
Match: B8C5P0_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C5P0_THAPS) HSP 1 Score: 143 bits (361), Expect = 1.020e-38 Identity = 68/115 (59.13%), Postives = 86/115 (74.78%), Query Frame = 1
Query: 13 VPSLAAQGNFLEAINVTLNVLEKHYMDRDLARSGNSIVMISASSGVFEVDAGLAGITKQRMMDNGIGMDMVSLSQPPLHTAPLFIYKSKSLA----------YERRYEVPHWMNL 327
+PS A+QGN LEAIN+TLN+L HY+DRDL R+GNSIV+I+ +GVFE++ LAGITKQRMMDNGIG DM+SL PPLH AP F+YK K + ++ +E+PHWMNL
Sbjct: 248 IPSTASQGNILEAINITLNLLHLHYIDRDLHRTGNSIVIITPGNGVFEIEKNLAGITKQRMMDNGIGSDMLSLGLPPLHVAPFFLYKEKGTSSVEEIQGFDDWKTFFEIPHWMNL 362
BLAST of mRNA_S-ischiensis_contig87.20243.1 vs. uniprot
Match: A0A1E7FH64_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FH64_9STRA) HSP 1 Score: 140 bits (352), Expect = 2.480e-37 Identity = 70/115 (60.87%), Postives = 82/115 (71.30%), Query Frame = 1
Query: 16 PSLAAQGNFLEAINVTLNVLEKHYMDRDLARSGNSIVMISASSGVFEVDAGLAGITKQRMMDNGIGMDMVSLSQPPLHTAPLFIYKSKSLAY-----------ERRYEVPHWMNL 327
PS A+QGN LEAINV LN+++ HY+DRDL R+G SIV++S GVFEVD GLAGIT QRMMDNGIG DM+SL PPLH AP F+Y +L Y E YEVPHWM+L
Sbjct: 254 PSCASQGNLLEAINVVLNLMQYHYLDRDLHRTGQSIVIVSPGCGVFEVDKGLAGITYQRMMDNGIGSDMLSLGLPPLHIAPFFLYNVSALYYLSLEKQGIDTNETYYEVPHWMHL 368
BLAST of mRNA_S-ischiensis_contig87.20243.1 vs. uniprot
Match: A0A6G0XLB7_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XLB7_9STRA) HSP 1 Score: 141 bits (355), Expect = 5.350e-36 Identity = 69/109 (63.30%), Postives = 83/109 (76.15%), Query Frame = 1
Query: 10 GVPSLAAQGNFLEAINVTLNVLEKHYMDRDLARSGNSIVMISASSGVFEVDAGLAGITKQRMMDNGIGMDMVSLSQPPLHTAPLFIYKSKSLAY-ERRYEVPHWMNLGF 333
GVP+ A++GNFLEAINVTLNVL+KHYMDRDL R+G IVMI+A S VF V LA ITKQRMMD G+GMDM+SL+ PPLH PLFI+K + Y VPHW+++ F
Sbjct: 372 GVPARASEGNFLEAINVTLNVLDKHYMDRDLNRAGQGIVMITAGSAVFNVPKRLAQITKQRMMDTGVGMDMISLTTPPLHPVPLFIWKQPPEQQGDDEYNVPHWISVSF 480 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig87.20243.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig87.20243.1 >prot_S-ischiensis_contig87.20243.1 ID=prot_S-ischiensis_contig87.20243.1|Name=mRNA_S-ischiensis_contig87.20243.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=151bp EAVGVPSLAAQGNFLEAINVTLNVLEKHYMDRDLARSGNSIVMISASSGVback to top mRNA from alignment at S-ischiensis_contig87:220327..223380+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig87.20243.1 ID=mRNA_S-ischiensis_contig87.20243.1|Name=mRNA_S-ischiensis_contig87.20243.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3054bp|location=Sequence derived from alignment at S-ischiensis_contig87:220327..223380+ (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig87:220327..223380+ >mRNA_S-ischiensis_contig87.20243.1 ID=mRNA_S-ischiensis_contig87.20243.1|Name=mRNA_S-ischiensis_contig87.20243.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=906bp|location=Sequence derived from alignment at S-ischiensis_contig87:220327..223380+ (Schizocladia ischiensis KU_0333)back to top |