mRNA_S-ischiensis_contig87.20239.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig87.20239.1
Unique NamemRNA_S-ischiensis_contig87.20239.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig87.20239.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig87contigS-ischiensis_contig87:187945..188636 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size692
Cds size675
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817350.6254537-UTR-S-ischiensis_contig87:187944..1879611622817350.6254537-UTR-S-ischiensis_contig87:187944..187961Schizocladia ischiensis KU_0333UTRS-ischiensis_contig87 187945..187961 +
1695741047.999989-UTR-S-ischiensis_contig87:187944..1879611695741047.999989-UTR-S-ischiensis_contig87:187944..187961Schizocladia ischiensis KU_0333UTRS-ischiensis_contig87 187945..187961 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817350.6364207-CDS-S-ischiensis_contig87:187961..1886361622817350.6364207-CDS-S-ischiensis_contig87:187961..188636Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 187962..188636 +
1695741048.0114298-CDS-S-ischiensis_contig87:187961..1886361695741048.0114298-CDS-S-ischiensis_contig87:187961..188636Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 187962..188636 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig87.20239.1prot_S-ischiensis_contig87.20239.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig87 187962..188636 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig87.20239.1

>prot_S-ischiensis_contig87.20239.1 ID=prot_S-ischiensis_contig87.20239.1|Name=mRNA_S-ischiensis_contig87.20239.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=225bp
MRCAACGTRLCTIQAASHKLGPRQKFAGTKDRKGVGGGGRTCASSKNGCN
IWVSFVNTHHNHIGAPKDFGECLRVWYLYRYHTAVSQPTSGRVCAKPTSS
RDPHSLPTSLSFSFPIFSFLVALCLPCERSRERKGFCIWDPELAHVETLP
VSHSVTVVLCLKSIHSRPLFRYSSAVYLWTPGSVLVSRVYGQMEALPQNF
HCHEYVACVGCLTRPRRPEIGVLQ*
back to top

mRNA from alignment at S-ischiensis_contig87:187945..188636+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig87.20239.1 ID=mRNA_S-ischiensis_contig87.20239.1|Name=mRNA_S-ischiensis_contig87.20239.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=692bp|location=Sequence derived from alignment at S-ischiensis_contig87:187945..188636+ (Schizocladia ischiensis KU_0333)
GTGGAGGAGAGGTCTGAATGCGGTGTGCTGCGTGTGGTACTAGGTTATGC
ACAATTCAAGCGGCATCCCACAAACTCGGACCTCGACAGAAATTCGCCGG
AACAAAGGACAGAAAAGGAGTGGGCGGTGGAGGGAGAACATGTGCAAGTA
GCAAAAACGGATGCAATATCTGGGTTTCCTTTGTAAACACTCACCACAAT
CACATCGGTGCGCCGAAAGATTTTGGAGAATGCTTGCGTGTGTGGTACTT
GTACAGGTATCATACTGCTGTATCTCAACCGACGAGTGGTCGCGTTTGCG
CAAAACCTACCAGCTCAAGAGACCCGCACTCCCTGCCCACTTCTCTCTCC
TTCTCCTTTCCAATTTTTAGTTTTCTTGTTGCCCTGTGTTTGCCCTGCGA
GCGCTCGCGAGAGAGGAAGGGCTTCTGTATTTGGGACCCGGAACTGGCAC
ACGTAGAGACACTTCCTGTTTCCCACTCCGTTACAGTAGTTCTCTGCTTG
AAAAGTATACATTCCCGCCCACTCTTCAGGTACTCGAGTGCAGTTTATCT
CTGGACCCCCGGGAGCGTGCTCGTATCGAGGGTTTATGGGCAAATGGAAG
CACTGCCGCAAAATTTTCATTGCCACGAATATGTTGCATGCGTTGGCTGC
CTTACGAGGCCCCGGAGACCAGAGATCGGTGTACTACAGTAG
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig87:187945..188636+

>mRNA_S-ischiensis_contig87.20239.1 ID=mRNA_S-ischiensis_contig87.20239.1|Name=mRNA_S-ischiensis_contig87.20239.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1350bp|location=Sequence derived from alignment at S-ischiensis_contig87:187945..188636+ (Schizocladia ischiensis KU_0333)
ATGCGGTGTGCTGCGTGTGGTACTAGGTTATGCACAATTCAAGCGGCATC
CCACAAACTCGGACCTCGACAGAAATTCGCCGGAACAAAGGACAGAAAAG
GAGTGGGCGGTGGAGGGAGAACATGTGCAAGTAGCAAAAACGGATGCAAT
ATCTGGGTTTCCTTTGTAAACACTCACCACAATCACATCGGTGCGCCGAA
AGATTTTGGAGAATGCTTGCGTGTGTGGTACTTGTACAGGTATCATACTG
CTGTATCTCAACCGACGAGTGGTCGCGTTTGCGCAAAACCTACCAGCTCA
AGAGACCCGCACTCCCTGCCCACTTCTCTCTCCTTCTCCTTTCCAATTTT
TAGTTTTCTTGTTGCCCTGTGTTTGCCCTGCGAGCGCTCGCGAGAGAGGA
AGGGCTTCTGTATTTGGGACCCGGAACTGGCACACGTAGAGACACTTCCT
GTTTCCCACTCCGTTACAGTAGTTCTCTGCTTGAAAAGTATACATTCCCG
CCCACTCTTCAGGTACTCGAGTGCAGTTTATCTCTGGACCCCCGGGAGCG
TGCTCGTATCGAGGGTTTATGGGCAAATGGAAGCACTGCCGCAAAATTTT
CATTGCCACGAATATGTTGCATGCGTTGGCTGCCTTACGAGGCCCCGGAG
ACCAGAGATCGGTGTACTACAGTAGATGCGGTGTGCTGCGTGTGGTACTA
GGTTATGCACAATTCAAGCGGCATCCCACAAACTCGGACCTCGACAGAAA
TTCGCCGGAACAAAGGACAGAAAAGGAGTGGGCGGTGGAGGGAGAACATG
TGCAAGTAGCAAAAACGGATGCAATATCTGGGTTTCCTTTGTAAACACTC
ACCACAATCACATCGGTGCGCCGAAAGATTTTGGAGAATGCTTGCGTGTG
TGGTACTTGTACAGGTATCATACTGCTGTATCTCAACCGACGAGTGGTCG
CGTTTGCGCAAAACCTACCAGCTCAAGAGACCCGCACTCCCTGCCCACTT
CTCTCTCCTTCTCCTTTCCAATTTTTAGTTTTCTTGTTGCCCTGTGTTTG
CCCTGCGAGCGCTCGCGAGAGAGGAAGGGCTTCTGTATTTGGGACCCGGA
ACTGGCACACGTAGAGACACTTCCTGTTTCCCACTCCGTTACAGTAGTTC
TCTGCTTGAAAAGTATACATTCCCGCCCACTCTTCAGGTACTCGAGTGCA
GTTTATCTCTGGACCCCCGGGAGCGTGCTCGTATCGAGGGTTTATGGGCA
AATGGAAGCACTGCCGCAAAATTTTCATTGCCACGAATATGTTGCATGCG
TTGGCTGCCTTACGAGGCCCCGGAGACCAGAGATCGGTGTACTACAGTAG
back to top