mRNA_S-ischiensis_contig87.20236.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig87.20236.1
Unique NamemRNA_S-ischiensis_contig87.20236.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig87.20236.1 vs. uniprot
Match: D8LF51_ECTSI (Eukaryotic translation initiation factor 3 k subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF51_ECTSI)

HSP 1 Score: 231 bits (589), Expect = 1.520e-69
Identity = 115/187 (61.50%), Postives = 144/187 (77.01%), Query Frame = 1 
Query:  379 VETKTYDFEANKALLKLYQFFPDLMQEEIVAQMLAKALMNVASSDFAALMYIVPPRLHQMEPVISLKRCSTALETASYADFWQTTTEADMPTFLPKIPGFLEGVRVFIANSLAATFQDVSRDYLEQCLDLGGADLEVFLAEHANTLSLTEDGQRAKFSPNRYNQIQPKKFKEAVEFDKMLHVISKLN 939
            V++ TYDFEANKALLKLYQFFPDL Q E VA +LAKALMNV S+DF ALMYIVPP LH+ EPV SLKR + +LETA + DFWQT  + DMP  +  +PGF + +RVFI ++LA TFQD +R  +EQCLDL GA+L  F+  +A+ +S + DG + KF+ N +NQIQPKKFKE+VEFDK+L  I KL+
Sbjct:    7 VKSGTYDFEANKALLKLYQFFPDLCQPEKVALVLAKALMNVPSTDFMALMYIVPPNLHRCEPVHSLKRAADSLETAKFVDFWQTCADGDMPALIESVPGFKKHMRVFIVHTLATTFQDSTRQNMEQCLDLDGAELASFVEANADVVSASPDGSKFKFALNEFNQIQPKKFKESVEFDKILKTIDKLS 193
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BLAST of mRNA_S-ischiensis_contig87.20236.1 vs. uniprot
Match: A0A835Z1S6_9STRA (Eukaryotic translation initiation factor 3 k subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1S6_9STRA)

HSP 1 Score: 208 bits (529), Expect = 2.890e-60
Identity = 111/221 (50.23%), Postives = 146/221 (66.06%), Query Frame = 1 
Query:  277 MELPASYEALRPVVEHEYFDHRAVPQLQDYVKEQVETKTYDFEANKALLKLYQFFPDLMQEEIVAQMLAKALMNVASSDFAALMYIVPPRLHQMEPVISLKRCSTALETASYADFWQTTTEADMPTFLPKIPGFLEGVRVFIANSLAATFQDVSRDYLEQCLDLGGADLEVFLAEHANTLSLTEDGQRAKFSPNRYNQIQPKKFKEAVEFDKMLHVISKLN 939
            M+LPA + A+RPVVEHEYFDHR VPQL+ Y+ EQ  + TYDFEANKALLKLYQFFPDL++ ++VA    KALM + + DFAAL Y+ P      EP+ SL R   ALE A Y  FW  T E +    + ++PGF +  R    ++LAATFQ V    LE+ + L GA+LE F+      + L  DG RA F+ N +NQ+QPK+FKE+VEF+K+L  +  L+
Sbjct:    5 MQLPARHAAMRPVVEHEYFDHRVVPQLEAYLAEQASSGTYDFEANKALLKLYQFFPDLVKADMVALAAGKALMALPAPDFAALSYLAPAAALAAEPLTSLARALDALEGARYGAFWAVTREPEAAALIQRLPGFADQARRVALSALAATFQSVPLSALEEAVALSGAELEAFVGGLGGEVKLG-DG-RAAFARNEFNQMQPKRFKESVEFEKVLKAVGTLS 223
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BLAST of mRNA_S-ischiensis_contig87.20236.1 vs. uniprot
Match: A0A7S2FZN4_9STRA (Eukaryotic translation initiation factor 3 subunit K n=2 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FZN4_9STRA)

HSP 1 Score: 162 bits (410), Expect = 5.770e-43
Identity = 90/221 (40.72%), Postives = 133/221 (60.18%), Query Frame = 1 
Query:  277 MELPASYEALRPVVEHEYFDHRAVPQLQDYVKEQVETKTYDFEANKALLKLYQFFPDLMQEEIVAQMLAKALMNVASSDFAALMYIVPPRLHQMEPVISLKRCSTALETASYADFWQTTTEADMPTFLPKIPGFLEGVRVFIANSLAATFQDVSRDYLEQCLDLGGADLEVFL-AEHANTLSLTEDGQRAKFSPNRYNQIQPKKFKEAVEFDKMLHVISKL 936
            M LPASYE +  +++ + F+  ++ +LQ Y+ EQ+ T+TYDF ANKALLKLY F+PD   ++ +A  L KALM + S+D   L+Y+VP      EPV +L RC+  LETA + +FW+          L  + GF E +R ++   L+ TFQ V  +     L L   DLE ++ A  ++ LS+  +G+   F+PN  NQ +PKKFKE + FD+ML +I  L
Sbjct:    1 MALPASYEEIATLLDEQAFEKSSIEKLQAYLDEQIATETYDFVANKALLKLYSFYPDQASDQYIALALTKALMALPSTDMMLLLYLVPESAQTKEPVATLVRCAVHLETAKFVEFWEVANLGGNE-LLDAVSGFDEAIRSYMIGVLSITFQKVESETFADLLALDEGDLEEYVSANQSDKLSI--EGKNVVFTPNSENQQRPKKFKENISFDQMLPLIDFL 218
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BLAST of mRNA_S-ischiensis_contig87.20236.1 vs. uniprot
Match: A0A7S2H0N4_9STRA (Eukaryotic translation initiation factor 3 subunit K n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H0N4_9STRA)

HSP 1 Score: 152 bits (384), Expect = 3.650e-39
Identity = 86/221 (38.91%), Postives = 128/221 (57.92%), Query Frame = 1 
Query:  277 MELPASYEALRPVVEHEYFDHRAVPQLQDYVKEQVETKTYDFEANKALLKLYQFFPDLMQEEIVAQMLAKALMNVASSDFAALMYIVPPRLHQMEPVISLKRCSTALETASYADFWQTTTEADMPTFLPKIPGFLEGVRVFIANSLAATFQDVSRDYLEQCLDLGGADLEVFLAEHANTLSLTEDGQRAKFSPNRYNQIQPKKFKEAVEFDKMLHVISKLN 939
            ME+P S +++   +  +      +  LQ+Y+ EQV+T TYDF ANK L+KLYQF+P+   E  +A  + K++M + S+D + L+Y+VP  L   EP+ +L RC+  LETA + +FW+          L  IPGF E +R F+   L+ TFQ +  +     L L    LE F+AE  + L L E+ +   F PN  NQ +PKKFKE + FD ML +I+ L+
Sbjct:    6 MEIPQSAQSIAEKLALDEHSVELIDTLQEYLNEQVQTDTYDFMANKTLMKLYQFYPERSNENCIALAVTKSMMALPSTDLSVLLYLVPETLALKEPIHTLVRCADHLETARFVEFWEVANLGGNE-LLDAIPGFPEAIRSFMIGVLSMTFQKLQSETFLDLLMLDEESLEEFIAEQTDKLCL-EEKKFVIFLPNSENQSRPKKFKENISFDHMLPIINLLS 224
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BLAST of mRNA_S-ischiensis_contig87.20236.1 vs. uniprot
Match: A0A7S2WSD7_9STRA (Eukaryotic translation initiation factor 3 subunit K n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WSD7_9STRA)

HSP 1 Score: 138 bits (347), Expect = 6.240e-34
Identity = 80/214 (37.38%), Postives = 117/214 (54.67%), Query Frame = 1 
Query:  298 EALRPVVEHEYFDHRAVPQLQDYVKEQVETKTYDFEANKALLKLYQFFPDLMQEEIVAQMLAKALMNVASSDFAALMYIVPPRLHQMEPVISLKRCSTALETASYADFWQTTTEADMPTFLPKIPGFLEGVRVFIANSLAATFQDVSRDYLEQCLDLGGADLEVFLAEHANTLSLTEDGQRAKFSPNRYNQIQPKKFKEAVEFDKMLHVISKLN 939
            E++   +    +D  A+  L+ YV EQVE  TYDF ANKALLKLYQFFP    E +VA +L KALM + S+D   L+Y+VP  +   EP+++L RC   LET  + +FW+          L  I GF E +R ++ + L  TFQ +  +     + L    L  ++   ++ + L  +G++  F  N  NQ QPK FKE + FD +  V+S L 
Sbjct:   12 ESVATALRRNEYDQDAIELLESYVAEQVEQNTYDFVANKALLKLYQFFPARTNEHMVALILTKALMALPSTDMTLLLYLVPDTVRAKEPILTLVRCHEHLETGKFVEFWEVANLGGNE-LLDAIHGFDEAMRQYMISVLCMTFQSLESEVFMDLVALPDEHLAEYVGTKSDVMRL--EGKQVIFVENPQNQPQPKTFKENISFDHLAPVMSLLT 222
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BLAST of mRNA_S-ischiensis_contig87.20236.1 vs. uniprot
Match: W7U338_9STRA (Eukaryotic translation initiation factor 3 subunit K n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U338_9STRA)

HSP 1 Score: 137 bits (346), Expect = 2.170e-33
Identity = 85/243 (34.98%), Postives = 139/243 (57.20%), Query Frame = 1 
Query:  211 PLSAARTDSRLDTAGGALLWGIMELPASYEALRP-VVEHEYFDHRAVPQLQDYVKEQVETKTYDFEANKALLKLYQFFPDLMQEEIVAQMLAKALMNVASSDFAALMYIVPPRLHQMEPVISLKRCSTALETASYADFWQTTTEADMPTFLPKIPGFLEGVRVFIANSLAATFQDVSRDYLEQCLDLGGADLEVFLAEHANTLSLTEDGQRAKFSPNRYNQIQPKKFKEAVEFDKMLHVISKL 936
            PLS   ++S +  A   +  G+   P+SY ++   V+    +    V  L++Y++ QV+  +YDFEANK+LLKLY  +P L   E V  +L KAL+N+ ++DF  L+YI+P +L   E V+++K  + ALETA YADFW +   +    FL  IP + + +R  I    AAT++ V + ++   + L G +L+ FL  +   L    +  R  F+PN+ NQ   +K+KE V+   ML ++++L
Sbjct:   20 PLSGPESNSSMANANPGISTGLPR-PSSYNSVHSNVLGDGLYTQEKVKHLEEYLQLQVKEGSYDFEANKSLLKLYLLYPPLANNENVETILLKALLNLPATDFTLLLYILPEKLQTDENVLTIKDAAEALETARYADFW-SILNSRAAVFLA-IPEWKDDIRKIILTVHAATYKAVDKAHVSDGVGLSGDELDSFLTANTPGLVAKVEVDRVIFAPNKENQPWVRKYKEKVDLQNMLGILNRL 259
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BLAST of mRNA_S-ischiensis_contig87.20236.1 vs. uniprot
Match: L8GVU4_ACACA (Eukaryotic translation initiation factor 3 subunit K n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GVU4_ACACA)

HSP 1 Score: 120 bits (300), Expect = 1.860e-27
Identity = 74/201 (36.82%), Postives = 111/201 (55.22%), Query Frame = 1 
Query:  343 AVPQLQDYVKEQVETKTYDFEANKALLKLYQFFPDLMQEEIVAQMLAKALMNVASSDFAALMYIVPPRLHQMEPVISLKRCSTALETASYADFWQTTTEADMPT--FLPKIPGFLEGVRVFIANSLAATFQDVSRDYLEQCLDLGGADLEVFLAEHANTLSLTEDGQRAKFSPNRYNQIQPKKFKEAVEFDKMLHVISKLN 939
            ++PQL+ Y++EQ++ ++YDFEAN ALLK++QF P  +  ++V ++L KALMN+   DF   +Y++P   HQ E V +LK+ S  LETA +  FW T  E D  T   L   PGF E ++ F  + L   +Q V  D L   + L GA L+ F+A+       TED           NQ +  K  E ++  K+ ++ S L 
Sbjct:   22 SLPQLKAYLQEQIDQRSYDFEANLALLKIFQFNPSHIDIDVVQKVLIKALMNLPHMDFPLSLYVLPEAAHQNEGVAALKKVSNLLETAQFTGFW-TLFEEDSATSVLLKNFPGFREAIQSFAVSVLTVAYQSVPVDVLASAVHLNGAALDEFVAKQEGWK--TED-DLVTLPVTELNQARQIKTTEQLDRKKVANIFSVLT 218
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BLAST of mRNA_S-ischiensis_contig87.20236.1 vs. uniprot
Match: A0A7S2SPG3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SPG3_9STRA)

HSP 1 Score: 112 bits (281), Expect = 1.870e-25
Identity = 61/146 (41.78%), Postives = 85/146 (58.22%), Query Frame = 1 
Query:  298 EALRPVVEHEYFDHRAVPQLQDYVKEQVETKTYDFEANKALLKLYQFFPDLMQEEIVAQMLAKALMNVASSDFAALMYIVPPRLHQMEPVISLKRCSTALETASYADFWQTTTEADMPTFLPKIPGFLEGVRVFIANSLAATFQDV 735
            E++   +    +D  A+  L+ YV EQVE  TYDF ANKALLKLYQFFP    E +VA +L KALM + S+D   L+Y+VP  +   EP+++L RC   LET  + +FW+          L  I GF E +R ++ + L  TFQ +
Sbjct:   12 ESVATALRRNEYDQDAIELLESYVAEQVEQNTYDFVANKALLKLYQFFPARTNEHMVALILTKALMALPSTDMTLLLYLVPDTVRAKEPILTLVRCHEHLETGKFVEFWEVANLGGNE-LLDAIHGFDEAMRQYMISVLCMTFQSL 156
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BLAST of mRNA_S-ischiensis_contig87.20236.1 vs. uniprot
Match: A0A150GCA7_GONPE (Eukaryotic translation initiation factor 3 subunit K n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GCA7_GONPE)

HSP 1 Score: 112 bits (279), Expect = 1.430e-24
Identity = 66/203 (32.51%), Postives = 113/203 (55.67%), Query Frame = 1 
Query:  346 VPQLQDYVKEQVETKTYDFEANKALLKLYQFFPDLMQEEIVAQMLAKALMNVASSDFAALMYIVPPRLHQM-EPVISLKRCSTALETASYADFWQTTTEADMPTFLPKIPGFLEGVRVFIANSLAATFQDVSRDYLEQCLDLGGADLEVFLAEHAN----TLSLTEDGQRAKFSPNRYNQIQPKKFKEAVEFDKMLHVISKLN 939
            +P L+ +V EQV  +T++ +AN ALL+ YQF P  ++ +++ ++L KA+M   + D+   + ++P RL Q+ E +    + + ALET+ + DFW  TT       L  IPGF E VR FIA++L  T+  V++  L  CL L GA L+ +L++       ++  T  G       N YNQ   K+ +E + F+++  ++  + 
Sbjct:   16 LPLLEQHVDEQVANRTWNLDANVALLRFYQFSPASVKPQLIVKILVKAIMQAPNPDYKYCITLLPERLQQVDESIFKAVQLANALETSRFGDFW--TTANTCRDLLGSIPGFYESVRGFIAHTLVHTYGRVTKRTLADCLKLEGATLDQYLSDKCRAAGWSIVNTPAGDVVALPKNDYNQSVVKRSQELIRFEQVAPMLKAVT 216
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BLAST of mRNA_S-ischiensis_contig87.20236.1 vs. uniprot
Match: A0A7S3K7B0_9STRA (Eukaryotic translation initiation factor 3 subunit K n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K7B0_9STRA)

HSP 1 Score: 110 bits (276), Expect = 6.650e-24
Identity = 75/212 (35.38%), Postives = 110/212 (51.89%), Query Frame = 1 
Query:  292 SYEALRPVVEHEYFDHRAVPQLQDYVKEQVETKTYDFEANKALLKLYQFFPDLMQEEIVAQMLAKALMNVASSDFAALMYIVPPRLHQMEPVIS-LKRCSTALETASYADFWQTTTEADMPTFLPKIPGFLEGVRVFIANSLAATFQDVSRDYLEQCLDLGGADLEVFLAEHANTLSL--TEDGQRAKFSPNRYNQIQPKKFKEAVEFDKML 918
            S E  R +   E F   ++  L+ YV+ QV  K YDF ANK L+KLYQFFP   Q EI+A++LA A+M   ++D  AL+Y+ P  L ++ P+   + +C + L  A +A+FWQ    A+  +    IPGF   +R FI + LA T+Q +S D     L L    L          L L  + D    KF PN+ NQ +     ++V+   +L
Sbjct:   16 SAEISRLLQSSEQFKESSISTLESYVESQVTDKNYDFGANKQLIKLYQFFPSNCQGEILAKVLAMAMMARPATDLKALLYMCPEALIEINPLAKRVIQCESLLAAAKFAEFWQQAMNAE-ESLDTLIPGFSASIRRFILDLLALTYQSLSIDVCAPILGLSTDQLRTLTTSPPAGLPLLPSTDPVFIKFIPNQENQPRHLAAGKSVQLSTLL 226
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig87.20236.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LF51_ECTSI1.520e-6961.50Eukaryotic translation initiation factor 3 k subun... [more]
A0A835Z1S6_9STRA2.890e-6050.23Eukaryotic translation initiation factor 3 k subun... [more]
A0A7S2FZN4_9STRA5.770e-4340.72Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S2H0N4_9STRA3.650e-3938.91Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S2WSD7_9STRA6.240e-3437.38Eukaryotic translation initiation factor 3 subunit... [more]
W7U338_9STRA2.170e-3334.98Eukaryotic translation initiation factor 3 subunit... [more]
L8GVU4_ACACA1.860e-2736.82Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S2SPG3_9STRA1.870e-2541.78Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A150GCA7_GONPE1.430e-2432.51Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S3K7B0_9STRA6.650e-2435.38Eukaryotic translation initiation factor 3 subunit... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig87contigS-ischiensis_contig87:136122..143017 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score233.4
Seed ortholog evalue1e-58
Seed eggNOG ortholog2880.D8LF51
Preferred nameEIF3K
KEGG koko:K05699,ko:K13344,ko:K15028
KEGG TC3.A.20.1
KEGG Pathwayko04146,ko04510,ko04520,ko04530,ko04670,ko04810,ko05146,ko05203,ko05322,map04146,map04510,map04520,map04530,map04670,map04810,map05146,map05203,map05322
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005852,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010941,GO:0010942,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0042981,GO:0043043,GO:0043065,GO:0043067,GO:0043068,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0065007,GO:0071704,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.ribosome binding
EggNOG OGsKOG3252@1,KOG3252@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03012,ko04131,ko04147,ko04812
Hectar predicted targeting categoryother localisation
Exons5
Model size1667
Cds size666
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817352.4917345-UTR-S-ischiensis_contig87:136121..1363971622817352.4917345-UTR-S-ischiensis_contig87:136121..136397Schizocladia ischiensis KU_0333UTRS-ischiensis_contig87 136122..136397 +
1695741049.4954376-UTR-S-ischiensis_contig87:136121..1363971695741049.4954376-UTR-S-ischiensis_contig87:136121..136397Schizocladia ischiensis KU_0333UTRS-ischiensis_contig87 136122..136397 +
1622817352.5633745-UTR-S-ischiensis_contig87:142292..1430171622817352.5633745-UTR-S-ischiensis_contig87:142292..143017Schizocladia ischiensis KU_0333UTRS-ischiensis_contig87 142293..143017 +
1695741049.5789297-UTR-S-ischiensis_contig87:142292..1430171695741049.5789297-UTR-S-ischiensis_contig87:142292..143017Schizocladia ischiensis KU_0333UTRS-ischiensis_contig87 142293..143017 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817352.5048604-CDS-S-ischiensis_contig87:136397..1364991622817352.5048604-CDS-S-ischiensis_contig87:136397..136499Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 136398..136499 +
1695741049.5116043-CDS-S-ischiensis_contig87:136397..1364991695741049.5116043-CDS-S-ischiensis_contig87:136397..136499Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 136398..136499 +
1622817352.5162804-CDS-S-ischiensis_contig87:136754..1368621622817352.5162804-CDS-S-ischiensis_contig87:136754..136862Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 136755..136862 +
1695741049.529726-CDS-S-ischiensis_contig87:136754..1368621695741049.529726-CDS-S-ischiensis_contig87:136754..136862Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 136755..136862 +
1622817352.5295384-CDS-S-ischiensis_contig87:138114..1382551622817352.5295384-CDS-S-ischiensis_contig87:138114..138255Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 138115..138255 +
1695741049.5413818-CDS-S-ischiensis_contig87:138114..1382551695741049.5413818-CDS-S-ischiensis_contig87:138114..138255Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 138115..138255 +
1622817352.5420744-CDS-S-ischiensis_contig87:140924..1410651622817352.5420744-CDS-S-ischiensis_contig87:140924..141065Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 140925..141065 +
1695741049.5526555-CDS-S-ischiensis_contig87:140924..1410651695741049.5526555-CDS-S-ischiensis_contig87:140924..141065Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 140925..141065 +
1622817352.5524526-CDS-S-ischiensis_contig87:142118..1422921622817352.5524526-CDS-S-ischiensis_contig87:142118..142292Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 142119..142292 +
1695741049.5643137-CDS-S-ischiensis_contig87:142118..1422921695741049.5643137-CDS-S-ischiensis_contig87:142118..142292Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 142119..142292 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig87.20236.1prot_S-ischiensis_contig87.20236.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig87 136398..142292 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig87.20236.1

>prot_S-ischiensis_contig87.20236.1 ID=prot_S-ischiensis_contig87.20236.1|Name=mRNA_S-ischiensis_contig87.20236.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=222bp
MELPASYEALRPVVEHEYFDHRAVPQLQDYVKEQVETKTYDFEANKALLK
LYQFFPDLMQEEIVAQMLAKALMNVASSDFAALMYIVPPRLHQMEPVISL
KRCSTALETASYADFWQTTTEADMPTFLPKIPGFLEGVRVFIANSLAATF
QDVSRDYLEQCLDLGGADLEVFLAEHANTLSLTEDGQRAKFSPNRYNQIQ
PKKFKEAVEFDKMLHVISKLN*
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mRNA from alignment at S-ischiensis_contig87:136122..143017+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig87.20236.1 ID=mRNA_S-ischiensis_contig87.20236.1|Name=mRNA_S-ischiensis_contig87.20236.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=6896bp|location=Sequence derived from alignment at S-ischiensis_contig87:136122..143017+ (Schizocladia ischiensis KU_0333)
GGCATAGCTTGAGTCGGCCTGTACTGCGGACGCCTTGCTTAACGAAACGT
GCAGCTTGCCCGGGTGGAGCCGAAGAATAGCTCGCTCTTGCTGCTGGAAC
AGTAGTGAGCTACGCTGCTGGAGTGGAAGAGCAGATTTCGCGAGGGAGAA
AAAGCATCGCGCCCGGGCCGGGCCTAGCCAACGCGTGCGGCGTGGGCGGC
GGTTCCTTGGCCTCTCAGTGCTGCACGCACCGATTCGCGCCTGGACACAG
CTGGGGGGGCTTTGCTCTGGGGCATTATGGAGTTGCCAGCATCTTACGAG
GCGTTGCGACCAGTGGTGGAGCATGAGTACTTTGACCACCGGGCGGTGCC
CCAGTTGCAGGATTACGTCAAGGAGCAGGTGGGGCGCCTTGTCCACAGGT
CTTTCAAGAATCCCTGCGTTTTCGCTGTGTGCTGGGAGTACTTTTGGGGG
ATGTCCTGAGTTTCACTGCCAATGCCACGTATCACTCTGCTGTAGTACTT
GCAAGTGGGGGAGGCAGTCGTAGATATGGAAGCGTACTTACGCGTGCTTG
CAGTATACATATGTATTGCCAGAGGTTTGCTATAGTAGTGGCACTCACTG
TCGAACGGCGGGAATTGCTACCTGCCTTAACAGGTGGAAACAAAGACATA
TGACTTTGAGGCCAACAAGGCCCTGCTCAAGCTCTACCAGTTTTTCCCGG
ACCTGATGCAGGAGGAGATCGTCGCACAAATGCTCGCAAAGGTCAGTGGA
TATCAGTTACAGGAGACTGGTGCACGAATGGTGGCGCAGTTCAGGTGACT
GCCGCATAGTTTCCTTGTCGCTTCGGAAGAGACTGTCTGCCAGGGGCGGG
AGATGGCCTGCTCGAACTCGGGCTCTCAGAGTCGAGCGAGGGTGTGATGT
GATGTGATGTCAAACTGCAGTGATTTAGAGTGCACATCACATCACATGAG
CGTGGCATGTGACGTGATGTGATGCCTAACTGCAGTAATTTAGAACACAC
ATGATGATACAACATACTTAACATGACACTCTCCTCCCTCTCGGTCGAGG
CACGTGGTCATCCCCAACATGGCTATCCTGAGTGCCTATGTATGCTCGAG
AATTTTACTCTCCTAGTGTAGCATGTACTCATTGGCTTGTCTTGCGATAC
AACCTTGCGTGCCTTGCCAATAGCCCTAGGTAAAACACCTTCGCTTTTGC
CCTCCGACAGGAGTAGCTATTCAGCCATGGACTCTCGCAACCCAACTAGG
CCAAGAGTACTTTCAAGTACGTTTATGTGTCCAGTACTGTGGAATTGCCA
TCGATCTATGCTGTGGCGAAGGGCATAGTTTTGCTGAGAATGGACATGAC
TGTAGTTGCCTTTCAAGTTCACACCAGTACAACCATGCCGCAGTGCAGCC
GGCGATTGCCCATGTTGCCTCGGTCCAGTGTTGCTTCTGCTCGCCCCTTA
GCCAACTGTATTACAGTACAGTACAGTACAGTACAGTACATTATTGCTAC
TCCTCGCCTATTGCTCAACTGTACTACAGCACAGTACAGTAATCTTGCTC
CTTGCCTATTGAACAACTTTACTCCAGTGCAGTACAGTACAGTAGTACCC
ACCTACTAGACTGTAACTGTAGCTTGCTGCACACAGTACAGAACAGCGCC
TGCCTATTTTTTCCCGTGAGTGTTGGCTCACTGCTCTGCCTGCTGCAACA
TACTTCAAAGTAGTACAAAGTACCTCTCCGCTACTGTGGCAACTAGCCCC
ATCCAGAACAGCACTCTCTGTACTGAGTGTACTCGTGGGCTTGTCTTGCG
ACAAAACCTTGGAAGGCGTGCTTAGCCGACAGTTACACCCTAAGTCGACA
CATCGGGTTTGCCCCCCGACAGAGTAGCTATTTAGCCACGGACTCTTGCA
CTACTGTAGATTCATTGCTGTGGGACGGACCCCGGAGAGTCAAGTGCTGA
CGCCCCCCCGCCCCCGTGCGGCCCCCCGTATTTTGTGCTTCAGGCACTAA
TGAACGTGGCGAGCTCGGATTTTGCGGCGTTGATGTACATTGTTCCCCCG
CGCTTGCACCAGATGGAGCCGGTCATCTCCCTCAAGAGGTGCTCCACGGC
GCTTGAAACCGCCAGCTACGCCGATTTCTGGCAGGTGCGAAGCAGTGGTG
GTAGTAGTAGCAGTAGTAGTGGTGGTAGTAGTAGTAGTAGTAGTAGTAGT
AGTAGTAGTACTGGTAGTGCTGGTAGTGGTAGTAGTGGTAGTGCTAGTAG
TGGTAGTGCTAGTAGTGGTAGCAGTAGTAGTAGTAGCAGTAGTAGTAGTA
GTAGCAGTAGAGCAGCAGTAGTAGTAGTAGCAGTAGCAACAGTAGTAGTA
GTAGTAGCAGCGCCAGTGCTAGTAGGCGGTATTGATGTGATGTGATGTGT
TGCGATGCATGTACACCACTCTACTATTCAGTAGTTTGGCGTGACACGCC
ACACCACGCCAAAACCAACCCTGCACAAGTCCTCGTCCTACCGTACTGTA
CTACTCTACTGCTTGCTCTGCTACTCTACAGTAGTAGTACTGTACTACTC
CTACTCTAGCACTACAGCGCCAGGTATGTCCATGTCTCTCTTGACCGCAG
CCGTGGGCCGGACTCTCTCCGCACGGAAAAAGTGTTGATCTCCTGCGGCA
GGAGCCGACACTTGCCTGCAGTGCTATATAGACATGCTGACCTCAACAGT
GTAATATATGTACGAAGTACGTACTAACTGGCTTGTTTTCAGACATAGCT
TTGCGTGCATTGCCGACAGCCCTAAGTCGAACCTTCGGATTTGTTCTTCG
ACGGGAGTAGCTGTTATGTCCATGTTATACTGTGCATGGATATAGTCAAG
CCATTTGAGTACCACGAACTACCCGTATACAATACGATGCCGCCCGAGTG
GCCCTACACACAGAGCTCAAAGCCACCCTCCCGAACAATATTTACAAACG
TTTTAGGGACTCTACCCCTCGCCATCAGGTCATCACCCTCCTGGATCCAT
CAGGTGAGACATCTGGTTGGCCAGCGGAGGAGCAGGGTCGTGTAGAGCGT
GCTGTGAAAGCTTTTCTTTTGTCGGTGTGGAGTGCCCGGTTGGAGCGAGT
AAGTACATAGATGGGTATCTTGGATCTCCCCCCTCCGTGTCCCGGCACGG
CGAGGGAACCCCCTCTCCCGCTAGGCCTAGGTCTAGTAGGGAAGCCCCCC
CCCCCACCCGGACTCTGACGAGTCCGGGATGGGGGGGGTATGGACTGGGC
CGCCCCTCCGCCTCTGGCGCGGGGGTGGCCACCCCCTCCCACCCTGGCTC
TGCCAGGGGAGGGAGGGGACCTGCTCCGTCTCGAACGAGGCGCGGGGTCA
ATGGTCTCGGGACTACGGCAAGCACCGCGTGAGTACATATATACTATATA
GCTAAGCCGAAACTTCGAGTTTGCCCTTCGGCAATAATAGCTATCGAGCC
ATGGAGTCTCGCATCCCCAATAGGCCGGGATGCCAGGCCGCGCGCTGGCC
AAGCCCGGAATGCTGTCATGCCTTGGCATCGGCAACCCGGATGAGGGGCT
GCTCGCTAGACTACGACAAAGTGTAGCCGTCAGCGAGTACTTGTGGTGTC
TTTAGCAAAGTTGCTCTTGGGCGCTGGCACCCTAGCGAGGAACAATCAGG
ATGATGGATCCCGACCGCTAGTGCAGGTGCAGTCGCCAGGCAATGCCTCA
CTCCTTGAATACTTGGAGCACAACGCGAGCGCAGTGTGTGCAGTGTACGT
TTTTCTTTGTTTTTTCATGCGTACAACGAGGCGCGGGGTCAATGGTCTCG
GGACTACGGCGAGCACGTGTGTACACACACACACACACACACACACGCAC
ACACACACATATATATACGAACTTGGTACTGGCTTGTACATGCCCGTGGC
CAGATAGCCGCCCCTGTTGTGGGGCAAAAATCCAAACAAGTTTTTACTCG
TGTGTACGGCTGTCGGCTAAACACGCCTTGCATGGGTGCTTCGTACTTCG
AAGTATATCGCAAGATAAGCAACGTACAGCACAGCCAATGGAGTGCAGGC
AGTCTATTCGTACTGTACTTGCATGCTGCTAACACCGCGGATTTATTGCC
ACAGACAGTCTGCTGTGCTTGCATGCTGCTTGCATGCTGCTTGCACTGCA
AATATTCCCACAGACAGCCTCTCGTACTTGCATGCTGCTAACACTGCAGA
TTTATTGCCACAGAGGACCGCCCGAAGAGCCGAAATCCGCGAAGAGGAAG
GGAGTGTCCCCGGGCGCTATAGGAACCTTTGGGGAAGGCGTTTCCCTCTC
TGAGGGGGGGGTGCGCGATGCACCCGGAGGGCTGAACGCGGCCGACATTC
GTACTGCAGTACTGTACTGAACTGTACTGTACTTTACTAATGTGCTTAAT
ACATATAGTACTATATATGGTACATGCTATAGGAACCTTTGGGGAAAGCA
CTTCCCTCCATTTGCGGGAGGTGCGCGATGCACAGGAGGGCTGAACGTGG
CCGACTGTACAGTAGTACTTACACCTGCTAGGTACTACTGGACTGTACTG
CAGTGCTGTAAACCCGATGTTTTGTTTTACGTTGGGCTGTCGGCAAAGCA
CGCAAGGTTATGTCGCGAGACGAGTGACAATGAGTGCGTACTTCGAAGTA
TGAGTATACATAGTGCTCGTACTCATATGATATGCTCGTTTTTACTTCGA
AGTACCCATTCCAATCTGTACCGCGAGTACCTACAAGATCCGATATCCGA
CGAGCCAACCCGCGCGGCCTGCCTTGCGTGTCTGCACGCACGCACGCACG
CAGACGACCACGGAGGCGGACATGCCGACCTTCCTGCCAAAGATACCGGG
CTTCCTGGAGGGTGTGCGCGTGTTCATCGCTAACAGCCTGGCCGCCACCT
TCCAGGACGTGTCCCGCGACTACCTGGAGCAATGCCTTGACCTGGTGAGT
CATACTACTGTACTACTACTGTAGTAGTTTTCGTAGCACGTAGTAGTACC
TGGAGCAATGCCTTGACCTGGTGCGTGATACTACTAGTACGGTAGTATTG
CCAGGAGCAATGACTGGACCTGGTGAGTGATGAGAGCAATGCCTTGACCT
AATGAGTGATAGTAATACTACCTGGAGCAATGCCTTGACCTGGCGAGTGA
TACTACTTTGAAGTAATAGTACCTGGAGCAATGCCTTGACCTGACGAGTG
CCTGACTGCCAAGCACCTTAGTAGTACCACAACAATACTTGGTTGGATGC
ATCTTTTCTGTAGTCGAGGACCGCGGTCACACCTAGCCTGCCACAGTATC
TGTGCAATTGTGGCAATCATCGGATTGGTGTCTGCAGACAGGGAGTCACG
GCGATTTTTTGGCCATGGGCTTCCATTTCCCGGTGCCGCGGCCCCCAAAG
AATGATTTGACTCGGCGCTTTTGAGTTATGGTATCCCCTCTTCCAAGCGC
CGTATTAGTACAAGCATTCAGTCACTTTGTACTACATAGAGCCAATGGGT
GCTGTAGTAGTCTGTTCTACCTCGCGATATCATTTTTTGCAAGAAGATAG
ACAAGCGCGTGGGAAAGAAAGAGTCATCACTACTTACGCGAGTTCAGGGC
CCCAACCCCGGAAGCCCCTCCTTCGCTCCCCTTCACTCGCAGGGCACACA
GAGCAGAGCATAAAGAAAAAGGAAGGGGGAGAGCGGGAGGGACACAACAA
CAGTGCAGGAGGGGTCCCTTGTGCCATAAACAAGGACCGATTTTAATTTC
CCCCGTACGGACAGCTAGGGTGGAGACACTCACCAAAGAGCTACCCTTGC
TTCCACTCGCATGGGACAGAAACAAACCAATACGCCAGACACAATGCACG
GAGCAAGGGGTCCTCTCGTCGAATATTTTCCCTCGCGAACCCTGTGACGG
CGTGACCTGTGCGGTGGACGAAGCAAGGGGTGTCTCTTGTCGAATACGAG
GTATTTTCCCTCACCAACCCTGTGACGGCGTGACCTGTGTGTGTCAGGGC
GGTGCGGACCTGGAGGTGTTTCTGGCGGAGCACGCAAACACACTCTCCCT
CACGGAGGACGGCCAGCGGGCCAAGTTCAGCCCGAACCGGTACAACCAGA
TCCAGCCCAAGAAGTTCAAGGAGGCTGTGGAGTTTGACAAGATGCTGCAC
GTCATCAGCAAGCTCAACTGATGTTGTGTTGTCTCCATCGTAATGATCGT
ATGCTGCACGTCATCAGCAAGCCCAACTGATGTTGTGATGATCGCATCTC
GTGGAGTTTTGGCTACTAGTATGCGCTCTGTTGGCGCCGCCCGCAAGCTA
CCACGGATATCCGGTTTTCGATTGAGAGCAATGCCGGGCCCTCCTGGATG
TCATCGCGATGAGTTCTCCGTCGGGGCCAGAAGATACGGATCATGATCGG
CGTGGGGGTAGCACGGTACGTACCTACACATGTCCCCGGATGTGCAAGAA
CGGAGCAGCTGGGCTCTGGGCAATCAGATGAGGATGCCATGATGATGGTG
TTGGAGTAGTGATAGTCATAGTCTCGGTTAGGTATGCAACATTACCAGTA
GCAGTGCTTTGTTCAAAGTACTGCACAGGTACAGTAGATGACATTGTCCG
CCACAAGGCAACTGTCGCTGTGTGTCAGCGACAGACCAGTGCGGACCCTC
GTGTCCCGATTTGAACCACGAAATTCTTCGAGTTCAAATGAAGCACTCAC
TGACAAATGCTGGCGTCAAATGCATGCCAGTGGTCAGCTCATTGACAAGG
ATTGATCCGGGCTGGCCTGCCAGCTGGGCCGTGAGCATGCATGACACCTC
TCGATGGATCAAACTTGGAAGACTGCCATGACATTCAGCAATGCTCAGTC
ACTCGTTGAAGCAACAAGTAACCACGAGTTTCAAGACGAGAGAGAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig87:136122..143017+

>mRNA_S-ischiensis_contig87.20236.1 ID=mRNA_S-ischiensis_contig87.20236.1|Name=mRNA_S-ischiensis_contig87.20236.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1332bp|location=Sequence derived from alignment at S-ischiensis_contig87:136122..143017+ (Schizocladia ischiensis KU_0333)
ATGGAGTTGCCAGCATCTTACGAGGCGTTGCGACCAGTGGTGGAGCATGA
GTACTTTGACCACCGGGCGGTGCCCCAGTTGCAGGATTACGTCAAGGAGC
AGATGGAGTTGCCAGCATCTTACGAGGCGTTGCGACCAGTGGTGGAGCAT
GAGTACTTTGACCACCGGGCGGTGCCCCAGTTGCAGGATTACGTCAAGGA
GCAGGTGGAAACAAAGACATATGACTTTGAGGCCAACAAGGCCCTGCTCA
AGCTCTACCAGTTTTTCCCGGACCTGATGCAGGAGGAGATCGTCGCACAA
ATGCTCGCAAAGGTGGAAACAAAGACATATGACTTTGAGGCCAACAAGGC
CCTGCTCAAGCTCTACCAGTTTTTCCCGGACCTGATGCAGGAGGAGATCG
TCGCACAAATGCTCGCAAAGGCACTAATGAACGTGGCGAGCTCGGATTTT
GCGGCGTTGATGTACATTGTTCCCCCGCGCTTGCACCAGATGGAGCCGGT
CATCTCCCTCAAGAGGTGCTCCACGGCGCTTGAAACCGCCAGCTACGCCG
ATTTCTGGCAGGCACTAATGAACGTGGCGAGCTCGGATTTTGCGGCGTTG
ATGTACATTGTTCCCCCGCGCTTGCACCAGATGGAGCCGGTCATCTCCCT
CAAGAGGTGCTCCACGGCGCTTGAAACCGCCAGCTACGCCGATTTCTGGC
AGACGACCACGGAGGCGGACATGCCGACCTTCCTGCCAAAGATACCGGGC
TTCCTGGAGGGTGTGCGCGTGTTCATCGCTAACAGCCTGGCCGCCACCTT
CCAGGACGTGTCCCGCGACTACCTGGAGCAATGCCTTGACCTGACGACCA
CGGAGGCGGACATGCCGACCTTCCTGCCAAAGATACCGGGCTTCCTGGAG
GGTGTGCGCGTGTTCATCGCTAACAGCCTGGCCGCCACCTTCCAGGACGT
GTCCCGCGACTACCTGGAGCAATGCCTTGACCTGGGCGGTGCGGACCTGG
AGGTGTTTCTGGCGGAGCACGCAAACACACTCTCCCTCACGGAGGACGGC
CAGCGGGCCAAGTTCAGCCCGAACCGGTACAACCAGATCCAGCCCAAGAA
GTTCAAGGAGGCTGTGGAGTTTGACAAGATGCTGCACGTCATCAGCAAGC
TCAACTGAGGCGGTGCGGACCTGGAGGTGTTTCTGGCGGAGCACGCAAAC
ACACTCTCCCTCACGGAGGACGGCCAGCGGGCCAAGTTCAGCCCGAACCG
GTACAACCAGATCCAGCCCAAGAAGTTCAAGGAGGCTGTGGAGTTTGACA
AGATGCTGCACGTCATCAGCAAGCTCAACTGA
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