mRNA_S-ischiensis_contig87.20234.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig87.20234.1
Unique NamemRNA_S-ischiensis_contig87.20234.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig87.20234.1 vs. uniprot
Match: D8LF54_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF54_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 4.100e-26
Identity = 57/105 (54.29%), Postives = 73/105 (69.52%), Query Frame = 2
Query:   35 VLATKEHEASAAAASGDVELKVLLDLDMAVLGGERGAYADYAAKIREEYIHVPAETYCEKRAQVLRGFLRTETIFATSAYREGREQAARANIAWEVSVLEQGSIP 349
            ++ATK H  S    S D +L+  +DLDMAV+G ER  Y  YA++IREEYIHVPA+TYC+KRA++LR FL T +IFAT  Y+   E  AR N+A EV +L  G IP
Sbjct:  116 IIATKRHSVSG---SDDQDLRAFIDLDMAVVGRERSGYLTYASQIREEYIHVPADTYCKKRAEILREFLSTGSIFATDEYQRTFEAKARENVAAEVEMLNAGVIP 217          
BLAST of mRNA_S-ischiensis_contig87.20234.1 vs. uniprot
Match: A0A1Z5KJ21_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KJ21_FISSO)

HSP 1 Score: 92.4 bits (228), Expect = 2.850e-19
Identity = 51/109 (46.79%), Postives = 69/109 (63.30%), Query Frame = 2
Query:   32 LVLATKEHEASAAAASGDVE----LKVLLDLDMAVLGGERGAYADYAAKIREEYIHVPAETYCEKRAQVLRGFLRTETIFATSAYREGREQAARANIAWEVSVLEQGSI 346
            ++LATK H       SGD+     +   LDLD++VLG    AY  YA  IR+EY HVP ETYC+KRA +L  FL+ + I+ TS +RE  E+ AR+N+A E+ +L QG I
Sbjct:  126 MILATKSHH------SGDLSDTSAVAFFLDLDLSVLGKTEEAYQQYAILIRKEYSHVPQETYCQKRADILETFLQQQNIYKTSLFREMFEERARSNLAAEIRLLRQGVI 228          
BLAST of mRNA_S-ischiensis_contig87.20234.1 vs. uniprot
Match: A0A1Z5KTL6_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KTL6_FISSO)

HSP 1 Score: 87.0 bits (214), Expect = 3.160e-17
Identity = 46/105 (43.81%), Postives = 65/105 (61.90%), Query Frame = 2
Query:   32 LVLATKEHEASAAAASGDVELKVLLDLDMAVLGGERGAYADYAAKIREEYIHVPAETYCEKRAQVLRGFLRTETIFATSAYREGREQAARANIAWEVSVLEQGSI 346
            ++LATK H +          +   LDLD++VLG    AY  YA  I++EY HVP ETYC+KRA +L  FL+ + I+ T+ +RE  E+ AR+N+A E+  L QG I
Sbjct:  126 MILATKSHHSVDPNMKDTSVIAFFLDLDLSVLGKTEEAYQRYAILIQKEYSHVPHETYCQKRADILETFLQQQNIYKTALFREMFEERARSNLAAEIRCLRQGII 230          
BLAST of mRNA_S-ischiensis_contig87.20234.1 vs. uniprot
Match: A0A6J7C5B1_9ZZZZ (Unannotated protein n=1 Tax=freshwater metagenome TaxID=449393 RepID=A0A6J7C5B1_9ZZZZ)

HSP 1 Score: 82.0 bits (201), Expect = 9.900e-17
Identity = 42/86 (48.84%), Postives = 55/86 (63.95%), Query Frame = 2
Query:   83 DVELKVLLDLDMAVLGGERGAYADYAAKIREEYIHVPAETYCEKRAQVLRGFLRTETIFATSAYREGREQAARANIAWEVSVLEQG 340
            DV+  VL+D D+AVLGGE G YA Y   +R+EY HVP +T+   RA VL GFL+ + IF T      RE  ARAN+  E++ L +G
Sbjct:   11 DVDSAVLIDADLAVLGGEPGVYAAYVRGVRDEYAHVPNDTWRSGRAAVLEGFLQRDAIFTTPFMHAQREARARANLTAELTTLSRG 96          
BLAST of mRNA_S-ischiensis_contig87.20234.1 vs. uniprot
Match: A0A6I3ENT5_9ACTN (Metal-dependent phosphohydrolase n=2 Tax=root TaxID=1 RepID=A0A6I3ENT5_9ACTN)

HSP 1 Score: 84.3 bits (207), Expect = 2.220e-16
Identity = 47/103 (45.63%), Postives = 61/103 (59.22%), Query Frame = 2
Query:   32 LVLATKEHEASAAAASGDVELKVLLDLDMAVLGGERGAYADYAAKIREEYIHVPAETYCEKRAQVLRGFLRTETIFATSAYREGREQAARANIAWEVSVLEQG 340
            LV AT +H         DV+  VL+D D+AVLGGE G YA Y   +R+EY HVP +T+   RA VL GFL+ + IF T      RE  ARAN+  E++ L +G
Sbjct:  118 LVFATADHSVF------DVDSAVLIDADLAVLGGEPGVYAAYVRGVRDEYAHVPNDTWRSGRAAVLEGFLQRDAIFTTPFMHAQREARARANLTAELTTLSRG 214          
BLAST of mRNA_S-ischiensis_contig87.20234.1 vs. uniprot
Match: A0A399DUA4_9DEIN (Uncharacterized protein n=2 Tax=Calidithermus TaxID=2747271 RepID=A0A399DUA4_9DEIN)

HSP 1 Score: 83.6 bits (205), Expect = 4.940e-16
Identity = 47/106 (44.34%), Postives = 62/106 (58.49%), Query Frame = 2
Query:   20 RVVALVLATKEHEASAAAASGDVELKVLLDLDMAVLGGERGAYADYAAKIREEYIHVPAETYCEKRAQVLRGFLRTETIFATSAYREGREQAARANIAWEVSVLEQ 337
            RV  +VLATK H       S D   ++LLD D+++LG E   Y  Y+  IR+EY  VP E Y E R +VL  FL    ++ T A+  G E+AARAN+ WE+  LEQ
Sbjct:  114 RVSGMVLATKHHR------SDDPTTRLLLDADLSILGAEEAVYRRYSRAIRQEYAWVPPEAYREGRLRVLHAFLSRPQVYVTPAF-AGLEEAARANLRWEIGWLEQ 212          
BLAST of mRNA_S-ischiensis_contig87.20234.1 vs. uniprot
Match: UPI000A35EE9E (hypothetical protein n=1 Tax=Oceanospirillum sanctuarii TaxID=1434821 RepID=UPI000A35EE9E)

HSP 1 Score: 81.3 bits (199), Expect = 3.550e-15
Identity = 46/114 (40.35%), Postives = 68/114 (59.65%), Query Frame = 2
Query:   17 ERVVALVLATKEHEA---SAAAASGDVELKVLLDLDMAVLGGERGAYADYAAKIREEYIHVPAETYCEKRAQVLRGFLRTETIFATSAYREGREQAARANIAWEVSVLEQGSIP 349
            ERV  L++AT  H A   +   A+   +   +LD+D+A+LG     Y  Y   IR EY  VP   YC+KRA++L+GFL+  +++ T  +R  REQ AR N++W +  L QG+IP
Sbjct:  106 ERVYQLIMATC-HGALPDTDLQAASHPDQNWMLDIDLAILGAPFDGYRAYEQAIRNEYREVPLAIYCQKRAELLKGFLQEASLYQTEVFRIEREQQARDNLSWAIESLVQGAIP 218          
BLAST of mRNA_S-ischiensis_contig87.20234.1 vs. uniprot
Match: UPI00191940B5 (N-methyl-D-aspartate receptor NMDAR2C subunit n=1 Tax=Ramlibacter alkalitolerans TaxID=2039631 RepID=UPI00191940B5)

HSP 1 Score: 80.9 bits (198), Expect = 3.790e-15
Identity = 46/111 (41.44%), Postives = 66/111 (59.46%), Query Frame = 2
Query:    5 GEDI-ERVVALVLATKEHEASAAAASGDVELKVLLDLDMAVLGGERGAYADYAAKIREEYIHVPAETYCEKRAQVLRGFLRTETIFATSAYREGREQAARANIAWEVSVLE 334
            GED+ +RV ALVLAT+ H     A S D + ++LLD+D+A+LG     + DY  +IR EY HVP   +  +RAQVL  FL    I+ T A+ +  E  AR N+   ++ L+
Sbjct:  100 GEDVAQRVQALVLATRGH-----AESDDADTRLLLDIDLAILGAAPARFDDYEDQIRAEYAHVPGPEFRARRAQVLESFLERPRIYLTPAFHDALEHRARENLGRSLAALQ 205          
BLAST of mRNA_S-ischiensis_contig87.20234.1 vs. uniprot
Match: A0A2W6ZWF3_9CYAN (N-methyl-D-aspartate receptor NMDAR2C subunit n=1 Tax=Leptolyngbya sp. TaxID=47254 RepID=A0A2W6ZWF3_9CYAN)

HSP 1 Score: 80.9 bits (198), Expect = 4.500e-15
Identity = 43/117 (36.75%), Postives = 76/117 (64.96%), Query Frame = 2
Query:    2 GGEDI--ERVVALVLATKEHEASAAAASGDVELKVLLDLDMAVLGGERGAYADYAAKIREEYIHVPAETYCEKRAQVLRGFLRTETIFATSAYREGREQAARANIAWEVSVLEQGSI 346
            GGE+   + V A++LAT+      AAA   +++++++D+D+A+LG     +A Y A+IR+EY+ VP   +C++RA++L+G+L   TIF    +RE  E  A+ N+   +++L+QG I
Sbjct:   98 GGENSLQQSVHAMILATQH-----AAAPTTLDMRLVVDIDLAILGAAGDRFAQYEAQIRQEYLWVPGPVFCQRRAEMLQGWLNRPTIFTVDCFRERLEHQAQQNLRRSLTLLKQGPI 209          
BLAST of mRNA_S-ischiensis_contig87.20234.1 vs. uniprot
Match: A0A8J6UWF7_9CYAN (N-methyl-D-aspartate receptor NMDAR2C subunit n=1 Tax=Nodosilinea sp. FACHB-131 TaxID=2692832 RepID=A0A8J6UWF7_9CYAN)

HSP 1 Score: 80.5 bits (197), Expect = 1.040e-14
Identity = 47/116 (40.52%), Postives = 74/116 (63.79%), Query Frame = 2
Query:    2 GGEDI--ERVVALVLATKEHEASAAAASGDVELKVLLDLDMAVLGGERGAYADYAAKIREEYIHVPAETYCEKRAQVLRGFLRTETIFATSAYREGREQAARANIAWEVSVLEQGS 343
            GGED+    V  L+LATK H+A        V++ +++D+D+AVLG E   +A Y A+IR+EY  VP + +C+KRA++L+ FL    IF T+ ++E  E  A+ N+   ++VL +GS
Sbjct:  133 GGEDLLQRSVHDLILATK-HDAI----PSTVDMGLVVDIDLAVLGAEVDRFAQYDAQIRQEYAWVPEDVFCQKRAEILQSFLNRPAIFTTNFFQERLEHQAQRNLHRSLTVLMKGS 243          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig87.20234.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LF54_ECTSI4.100e-2654.29Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A1Z5KJ21_FISSO2.850e-1946.79Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A1Z5KTL6_FISSO3.160e-1743.81Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A6J7C5B1_9ZZZZ9.900e-1748.84Unannotated protein n=1 Tax=freshwater metagenome ... [more]
A0A6I3ENT5_9ACTN2.220e-1645.63Metal-dependent phosphohydrolase n=2 Tax=root TaxI... [more]
A0A399DUA4_9DEIN4.940e-1644.34Uncharacterized protein n=2 Tax=Calidithermus TaxI... [more]
UPI000A35EE9E3.550e-1540.35hypothetical protein n=1 Tax=Oceanospirillum sanct... [more]
UPI00191940B53.790e-1541.44N-methyl-D-aspartate receptor NMDAR2C subunit n=1 ... [more]
A0A2W6ZWF3_9CYAN4.500e-1536.75N-methyl-D-aspartate receptor NMDAR2C subunit n=1 ... [more]
A0A8J6UWF7_9CYAN1.040e-1440.52N-methyl-D-aspartate receptor NMDAR2C subunit n=1 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig87contigS-ischiensis_contig87:129440..131340 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.8
Seed ortholog evalue8.4e-17
Seed eggNOG ortholog2880.D8LF54
EggNOG free text desc.protein conserved in bacteria
EggNOG OGs2RZFA@2759,COG4339@1
Ec32 ortholog descriptionPredicted HD phosphohydrolase
Ec32 orthologEc-06_001740.1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size677
Cds size261
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig87.20234.1prot_S-ischiensis_contig87.20234.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig87 129555..131039 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817352.4093482-UTR-S-ischiensis_contig87:129439..1295541622817352.4093482-UTR-S-ischiensis_contig87:129439..129554Schizocladia ischiensis KU_0333UTRS-ischiensis_contig87 129440..129554 +
1695741049.4349318-UTR-S-ischiensis_contig87:129439..1295541695741049.4349318-UTR-S-ischiensis_contig87:129439..129554Schizocladia ischiensis KU_0333UTRS-ischiensis_contig87 129440..129554 +
1622817352.4575932-UTR-S-ischiensis_contig87:131039..1313401622817352.4575932-UTR-S-ischiensis_contig87:131039..131340Schizocladia ischiensis KU_0333UTRS-ischiensis_contig87 131040..131340 +
1695741049.4827762-UTR-S-ischiensis_contig87:131039..1313401695741049.4827762-UTR-S-ischiensis_contig87:131039..131340Schizocladia ischiensis KU_0333UTRS-ischiensis_contig87 131040..131340 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817352.4210417-CDS-S-ischiensis_contig87:129554..1296051622817352.4210417-CDS-S-ischiensis_contig87:129554..129605Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 129555..129605 +
1695741049.4518132-CDS-S-ischiensis_contig87:129554..1296051695741049.4518132-CDS-S-ischiensis_contig87:129554..129605Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 129555..129605 +
1622817352.4327881-CDS-S-ischiensis_contig87:130250..1303761622817352.4327881-CDS-S-ischiensis_contig87:130250..130376Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 130251..130376 +
1695741049.4612494-CDS-S-ischiensis_contig87:130250..1303761695741049.4612494-CDS-S-ischiensis_contig87:130250..130376Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 130251..130376 +
1622817352.4437978-CDS-S-ischiensis_contig87:130955..1310391622817352.4437978-CDS-S-ischiensis_contig87:130955..131039Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 130956..131039 +
1695741049.4715064-CDS-S-ischiensis_contig87:130955..1310391695741049.4715064-CDS-S-ischiensis_contig87:130955..131039Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 130956..131039 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig87.20234.1

>prot_S-ischiensis_contig87.20234.1 ID=prot_S-ischiensis_contig87.20234.1|Name=mRNA_S-ischiensis_contig87.20234.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=87bp
MAVLGGERGAYADYAAKIREEYIHVPAETYCEKRAQVLRGFLRTETIFAT
SAYREGREQAARANIAWEVSVLEQGSIPRQSAAVLA*
back to top

mRNA from alignment at S-ischiensis_contig87:129440..131340+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig87.20234.1 ID=mRNA_S-ischiensis_contig87.20234.1|Name=mRNA_S-ischiensis_contig87.20234.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1901bp|location=Sequence derived from alignment at S-ischiensis_contig87:129440..131340+ (Schizocladia ischiensis KU_0333)
GGGGGGCGAGGACATTGAGAGAGTGGTGGCGCTCGTGCTGGCCACCAAGG AGCATGAAGCGTCGGCGGCCGCCGCCTCGGGCGACGTGGAGCTGAAAGTG CTGCTGGACCTTGATATGGCGGTGTTGGGCGGGGAGCGTGGGGCGTATGC TGACTACGCGGCCAAGGTGAGTGGGGCACCTTTTTCGCACTGGTCAACAC CTTTTTCCCACTTTTTGTTTTTGGTACTGAAGTACATCTGTACACAGTAC TAACAGCAAGAACGCAGGGCGAGGTGCAGGCCACGTCACTACAGGCCTCA ACAGTGTGTGTACTAACGTCTCTGTGCATGCCCTGGACCCGAACGATCCT GGGTCTTTGTGGCAACTAAATAGTCCATGTTTTGATAGCTACTCCTGTTG AAAAGGCAAACACCAAGTTTCGGCTTAGCTACTTACACAATTCGAAGCAG TGTAGTTCGTGGTACTCAAATGGTTTGACTTGTCCATGCACACTATACTT CGAAGAAGTTGAGAATCCATGGCTCGACAGCTACTCCTGCCTTAGGGCAA GCCCAAAAGGTTCGACTCGGGGCTGTCGGCAAATGCACGCAAGGTTGTGT CGCAGGACAAGGCAATGAGTACACACACACATATACACACACACTCTGTC TGCCAGCCGCTCCGACTTTAACCCTTTTACCCCTGCTAAATTGGACTTGC ACACTAAAACCCTATGATTATACGGACCCCACGCGTACAAGGGTTGAGCA CGCGACTCCCGCTCTACACACTCTGCCCTGCTGTGCTCTGCTGTGCCTCC CTCCCGTTCAGATCAGGGAGGAGTACATCCACGTCCCTGCGGAGACGTAC TGTGAGAAGCGCGCGCAGGTGCTGAGGGGCTTCCTAAGGACCGAGACCAT CTTCGCCACAAGCGCGTACCGGGAAGGCCGGGAGCAAGTAAGGCACTGTT CGGTGTGTTTTTTCGTTGTTTGTTGTCGTATATAGCAGAGCCCTGGCGGA GTTGTGACCCCCCCTCCCACCCTGGCCCAAGCCGGGGGAGGGAGGGGACT GCTCCGTCTCGGTCGAGGCGAGGGGTGAATGGCTCTCGGGCTAAAGTGTC GTGGCCTAATCTGATAACAGTACAATTCTCCCCCTCGGTGGTCCAGCACG GAGAGTAGACTGGCGCGGCGGTCGGTGGCATGAACAGGGCTGACGCGGGG TACTTTGTCAGTAACGACAGGACTGTACTTGCAAGTATTAACAACCGTGT ACTTGTAAGCAATAACAACCCTGTCACTTGTAGGTAATAACAACCCTGTA CTTCTGAGTAATAACAACTCTGTACTCGTAAGTAATAACAACCCTGTACT TGTAAGTAGTAGCAACCCTGTACTTGCAAGTAATAGCAACCCTGTACTCG CAAGTACTTCGAGTAACAACAACCCTGTCCGGCGCGAGTGCATACTTGCG GGAAGCGCTATTGTAACGTTTGTTTCGCGCCCGCCTTTTGCCGCATGCAC CCCTCGTCTCGTGCAGGCCGCACGGGCCAACATTGCCTGGGAAGTGTCGG TGCTGGAGCAGGGGAGCATTCCCAGGCAGAGCGCTGCAGTGTTGGCATGA CTTGACGTGACTTGACAACCCAGGGCTCACCTCGCCATAGGTCCAGGCAG AGCACCCCGGGCGAGGTGCTGTAGGAAGTAGGTGCGTTCCAAGGGAAAAC ACGGGGCGAGGTGCAGGCCGCCTCACCAAACACCTCAACAGTGGCCCTGC TACTCTTGCGAGTACCTACTGCTGTTCTGTTATTCCTGTTGCTGGTATTC TCTCAGTATCAGTTGTTCCTGTTAATACAAGTACGGGTATTCTCGCAGGA CAACAGCACATAGATATTTTAGGGGCGAATGAATATTGTACTTGTACGAG C
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig87:129440..131340+

>mRNA_S-ischiensis_contig87.20234.1 ID=mRNA_S-ischiensis_contig87.20234.1|Name=mRNA_S-ischiensis_contig87.20234.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=522bp|location=Sequence derived from alignment at S-ischiensis_contig87:129440..131340+ (Schizocladia ischiensis KU_0333)
ATGGCGGTGTTGGGCGGGGAGCGTGGGGCGTATGCTGACTACGCGGCCAA
GATGGCGGTGTTGGGCGGGGAGCGTGGGGCGTATGCTGACTACGCGGCCA
AGATCAGGGAGGAGTACATCCACGTCCCTGCGGAGACGTACTGTGAGAAG
CGCGCGCAGGTGCTGAGGGGCTTCCTAAGGACCGAGACCATCTTCGCCAC
AAGCGCGTACCGGGAAGGCCGGGAGCAAATCAGGGAGGAGTACATCCACG
TCCCTGCGGAGACGTACTGTGAGAAGCGCGCGCAGGTGCTGAGGGGCTTC
CTAAGGACCGAGACCATCTTCGCCACAAGCGCGTACCGGGAAGGCCGGGA
GCAAGCCGCACGGGCCAACATTGCCTGGGAAGTGTCGGTGCTGGAGCAGG
GGAGCATTCCCAGGCAGAGCGCTGCAGTGTTGGCATGAGCCGCACGGGCC
AACATTGCCTGGGAAGTGTCGGTGCTGGAGCAGGGGAGCATTCCCAGGCA
GAGCGCTGCAGTGTTGGCATGA
back to top