mRNA_S-ischiensis_contig87.20229.1 (mRNA) Schizocladia ischiensis KU_0333
|
Overview
Homology
BLAST of mRNA_S-ischiensis_contig87.20229.1 vs. uniprot
Match: A0A836CAM6_9STRA (Bile Acid:Na+ symporter family n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAM6_9STRA) HSP 1 Score: 117 bits (294), Expect = 1.980e-27 Identity = 61/123 (49.59%), Postives = 79/123 (64.23%), Query Frame = 1
Query: 142 YQQARTLCETATKCFPGVPPIGARDIMQMRDEGQHVLLVDVRYPEEWQVSMLPGAITREELE---RGEQYAPERCADVLLVPYCTIGYRSGKYGVGLLKKGYRRVRNGEGVVLWTHEVQGGLV 501
Y +AR C T F + + A +++++R G VLLVDVR PEE VSM+ GAI+ +E E R +QY P A+ +VPYCTIGYRSG Y L GYR VRNGEG+V+WTH++ GLV
Sbjct: 5 YTKARESCMHYTGEFADIATLSALEVLRLRTNGTPVLLVDVRLPEEQDVSMIEGAISLDEFESSHRRDQYGPAALANTTVVPYCTIGYRSGAYARKLKTLGYRHVRNGEGIVMWTHDIGSGLV 127
BLAST of mRNA_S-ischiensis_contig87.20229.1 vs. uniprot
Match: D8LAT3_ECTSI (Bile Acid:Na+ symporter family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAT3_ECTSI) HSP 1 Score: 107 bits (268), Expect = 2.560e-23 Identity = 62/134 (46.27%), Postives = 84/134 (62.69%), Query Frame = 1
Query: 142 YQQARTLCETATKCFPGVPPIGARDIMQMRDEGQHVLLVDVRYPEEWQVSMLPGAITREELER---------GEQYAPERCADV-----LLVPYCTIGYRSGKYGVGLLKKGYRRVRNGEGVVLWTHEVQGGLV 501
Y++AR E AT F V I A+D++++ EG+ VLLVDVR +E +VSML GA+TREE E G+++ ER + ++ PYCT+G+RSG+Y L+ GY VRN EGVVLWTH+V GLV
Sbjct: 31 YEKARASVEKATGHFADVQTISAKDVLRLEQEGKKVLLVDVRTEDEMKVSMLRGALTREEFENSSLGEAARTGKKFR-ERSGEGEEAWGVVAPYCTVGFRSGQYAKKLVDLGYPSVRNSEGVVLWTHDVGNGLV 163
BLAST of mRNA_S-ischiensis_contig87.20229.1 vs. uniprot
Match: R1D8G3_EMIHU (Rhodanese domain-containing protein n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=R1D8G3_EMIHU) HSP 1 Score: 93.6 bits (231), Expect = 9.890e-19 Identity = 50/111 (45.05%), Postives = 67/111 (60.36%), Query Frame = 1
Query: 175 TKCFPGVPPIGARDIMQMRDEGQHVLLVDVRYPEEWQVSMLPGAITREELERGEQYAPERCADVLLVPYCTIGYRSGKY-------GVGLLKKGYRRVRNGEGVVLWTHEV 486
T F G+P A D++ M+ G+ V+L+DVR P E VS LPGA+ + + PER A +LVP+CTIG+RSG Y G+G+ VRNGEGVVLW+H+V
Sbjct: 17 TAGFAGLPLASASDVISMQQGGRDVILIDVRSPPERAVSTLPGALDQHSFAALAREEPERVAAAVLVPFCTIGFRSGLYCEWIRGGGLGMAASSELDVRNGEGVVLWSHDV 127
BLAST of mRNA_S-ischiensis_contig87.20229.1 vs. uniprot
Match: A0A0G4FZW3_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FZW3_VITBC) HSP 1 Score: 92.8 bits (229), Expect = 2.030e-16 Identity = 45/109 (41.28%), Postives = 70/109 (64.22%), Query Frame = 1
Query: 148 QARTLCETATKCFPGVPPIGARDIMQMRDEGQHVLLVDVRYPEEWQVSMLPGAITREELERGEQYAPERCADVLLVPYCTIGYRSGKYGVGLLKKGYRRVRNGEGVVLW 474
+A+ +C + FP VPP+ + ++++ G+ VL+VD R EE SM+ GAIT E+LE ++ + A ++VPYC++GYRSG L ++GY VRNG+G+VLW
Sbjct: 10 KAQEICRFYQRKFPRVPPLSVDEAVRLQSAGEKVLMVDCRTAEEMSCSMVDGAITLEQLEEADE--ADLQAATMIVPYCSVGYRSGIVAERLRRQGYENVRNGDGIVLW 116
BLAST of mRNA_S-ischiensis_contig87.20229.1 vs. uniprot
Match: A0A813CHA3_9DINO (Hypothetical protein (Fragment) n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A813CHA3_9DINO) HSP 1 Score: 88.2 bits (217), Expect = 3.760e-16 Identity = 56/134 (41.79%), Postives = 78/134 (58.21%), Query Frame = 1
Query: 127 TNAVKYQQARTLCETATKCFP--GVPPIGARDIMQMRDEGQHVLLVDVRYPEEWQVSMLPGAITREELERGEQYAPE-RCADV--LLVPYCTIGYRSGKYGVGLLKK-GYRRVRNGEGVVLWTHEVQGGLVPYS 510
TN + R + A+K P + ++ Q ++G+ V+LVDVR EE VSM+PG++T+E E Q P R AD L+VPYCT+GYRSG Y L+ K G + VRNGEGV++WT + G + P S
Sbjct: 3 TNRSREDALRAAADFASKAGSQQAAPLLPTTELRQRLEKGEDVVLVDVRCKEEMDVSMIPGSVTKEHFE--SQLLPGLRAADPQPLVVPYCTVGYRSGVYAKELMDKHGLQNVRNGEGVIMWTFDGSGLVRPAS 134
BLAST of mRNA_S-ischiensis_contig87.20229.1 vs. uniprot
Match: B5IIW4_9CYAN (Rhodanese-like domain protein n=1 Tax=Cyanobium sp. PCC 7001 TaxID=180281 RepID=B5IIW4_9CYAN) HSP 1 Score: 84.3 bits (207), Expect = 1.710e-15 Identity = 51/114 (44.74%), Postives = 66/114 (57.89%), Query Frame = 1
Query: 184 FPGVPPIGARDIMQMRDEGQHVLLVDVRYPEEWQVSMLPGAITREELERGEQYAPERCADVLLVPYCTIGYRSGKYGVGLLKKGYRRVRNGEGVVLWTHEVQGGLVPYSRGGPT 525
F VP +G D+ + R EGQ ++LVDVR P E VSMLPGAI+ E ER +Q R L+VPYCTIG RSG Y L+++G+R ++ W H GL +G PT
Sbjct: 47 FAEVPDLGVDDLQRARREGQPLVLVDVREPREQAVSMLPGAISVEAFERRKQ----RYRSSLVVPYCTIGLRSGLYSRQLIQEGFRTRNLAGSLLAWAHA---GLPLEHQGRPT 153
BLAST of mRNA_S-ischiensis_contig87.20229.1 vs. uniprot
Match: UPI001D97C81F (rhodanese-like domain-containing protein n=1 Tax=Waterburya agarophytonicola TaxID=2886916 RepID=UPI001D97C81F) HSP 1 Score: 83.6 bits (205), Expect = 3.770e-15 Identity = 60/158 (37.97%), Postives = 85/158 (53.80%), Query Frame = 1
Query: 58 WSLLVPWPFIAAMGVQMAAPSAGTNAV--------KYQQARTLCETATKCFPGVPPIGARDIMQMRDEGQHVLLVDVRYPEEWQVSMLPGAITREELERG-EQYAPERCADVLLVPYCTIGYRSGKYGVGLLKKGYRRVRNGEGVVL-WTHEVQGGLV 501
+ LL+ I +GV + SAG K Q T+ + FP + I + Q + +G++++LVDVR P+E VSM+PGAI E E EQY ++ ++V YCTIGYRSGKY L +KG + N EG +L W+H +QG LV
Sbjct: 3 YKLLLKQGLITVVGVLIILTSAGCRQTTVAQSEIDKRSQITTMYRKYAEEFPQIESITVEQLQQWQQQGKNIILVDVRTPKERAVSMIPGAIALAEFEENLEQYNDDKA---IIVAYCTIGYRSGKYTSKLRQKGIN-IFNLEGSLLAWSH-IQGKLV 155
BLAST of mRNA_S-ischiensis_contig87.20229.1 vs. uniprot
Match: A0A812UW94_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812UW94_9DINO) HSP 1 Score: 88.2 bits (217), Expect = 7.080e-15 Identity = 53/113 (46.90%), Postives = 73/113 (64.60%), Query Frame = 1
Query: 196 PPIGARDIMQMRDEGQHVLLVDVRYPEEWQVSMLPGAITREELERGEQYAPE-RCADV--LLVPYCTIGYRSGKYGVGLLKK-GYRRVRNGEGVVLWTHEVQGGLVPYSRGGP 522
P + ++ Q ++G++V+LVDVR EE VSM+PG++T+E E Q P R AD L+VPYCT+GYRSG Y L+ K G + VRNGEGV++WT + G LV + G P
Sbjct: 610 PLLPTAELRQRLEKGENVVLVDVRCKEEMDVSMIPGSVTKEHFE--SQLLPGLRAADPQPLVVPYCTVGYRSGVYAKELMNKHGLQNVRNGEGVIMWTFDGSG-LVRPAPGAP 719
BLAST of mRNA_S-ischiensis_contig87.20229.1 vs. uniprot
Match: A0A813HB18_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813HB18_POLGL) HSP 1 Score: 84.7 bits (208), Expect = 6.720e-14 Identity = 47/120 (39.17%), Postives = 69/120 (57.50%), Query Frame = 1
Query: 166 ETATKCFPGVPPIGARDIMQMRDEGQHVLLVDVRYPEEWQVSMLPGAITREELER-------------GEQYAPERCADVLLVPYCTIGYRSGKYGVGLLKK-GYRRVRNGEGVVLWTHE 483
E K P I ++ + +G+ ++LVDVR PEE QVSM+PGA+ ++ E G+Q A + + L+VPYCT+GYRSG Y L+ + G+ VRNGEGV++WT +
Sbjct: 214 EARAKADKEGPLIETPELRERLAKGEDIILVDVRTPEEMQVSMIPGAVAKDLFEAEILPKLLEGRQQDGQQQAIDSLSSPLIVPYCTVGYRSGLYCRELVNEHGFSNVRNGEGVIMWTFD 333
BLAST of mRNA_S-ischiensis_contig87.20229.1 vs. uniprot
Match: A3YZB0_9SYNE (Probable MPT-synthase sulfurylase n=2 Tax=Synechococcus sp. WH 5701 TaxID=69042 RepID=A3YZB0_9SYNE) HSP 1 Score: 79.0 bits (193), Expect = 1.270e-13 Identity = 53/111 (47.75%), Postives = 66/111 (59.46%), Query Frame = 1
Query: 190 GVPPIGARDIMQMRDEGQHVLLVDVRYPEEWQVSMLPGAITREELERGEQYAPERCADVLLVPYCTIGYRSGKYGVGLLKKGYRRVRNGEGVVL-WTHEVQGGLVPYSRGG 519
GVP I + + R GQ +LVDVR PEE +VSMLPGAIT+++ E + +R VL+VPYCTIG RSG Y L +GYR VRN G L W H + P+S G
Sbjct: 48 GVPEISVAEWLS-RPRGQSAVLVDVREPEEQRVSMLPGAITQQQFE----LSGDRYRGVLVVPYCTIGLRSGLYARELQAQGYR-VRNLAGSALAWAHAGR----PFSSAG 148 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig87.20229.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig87.20229.1 >prot_S-ischiensis_contig87.20229.1 ID=prot_S-ischiensis_contig87.20229.1|Name=mRNA_S-ischiensis_contig87.20229.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=366bp MPGRHLEQDREAWSLLVPWPFIAAMGVQMAAPSAGTNAVKYQQARTLCETback to top mRNA from alignment at S-ischiensis_contig87:112316..115214- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig87.20229.1 ID=mRNA_S-ischiensis_contig87.20229.1|Name=mRNA_S-ischiensis_contig87.20229.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2899bp|location=Sequence derived from alignment at S-ischiensis_contig87:112316..115214- (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig87:112316..115214- >mRNA_S-ischiensis_contig87.20229.1 ID=mRNA_S-ischiensis_contig87.20229.1|Name=mRNA_S-ischiensis_contig87.20229.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2196bp|location=Sequence derived from alignment at S-ischiensis_contig87:112316..115214- (Schizocladia ischiensis KU_0333)back to top |