mRNA_S-ischiensis_contig87.20226.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig87.20226.1
Unique NamemRNA_S-ischiensis_contig87.20226.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig87.20226.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig87contigS-ischiensis_contig87:65270..65984 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size715
Cds size408
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig87.20226.1prot_S-ischiensis_contig87.20226.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig87 65295..65702 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817350.5134225-UTR-S-ischiensis_contig87:65269..652941622817350.5134225-UTR-S-ischiensis_contig87:65269..65294Schizocladia ischiensis KU_0333UTRS-ischiensis_contig87 65270..65294 +
1695741047.927827-UTR-S-ischiensis_contig87:65269..652941695741047.927827-UTR-S-ischiensis_contig87:65269..65294Schizocladia ischiensis KU_0333UTRS-ischiensis_contig87 65270..65294 +
1622817350.541366-UTR-S-ischiensis_contig87:65702..659841622817350.541366-UTR-S-ischiensis_contig87:65702..65984Schizocladia ischiensis KU_0333UTRS-ischiensis_contig87 65703..65984 +
1695741047.953412-UTR-S-ischiensis_contig87:65702..659841695741047.953412-UTR-S-ischiensis_contig87:65702..65984Schizocladia ischiensis KU_0333UTRS-ischiensis_contig87 65703..65984 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817350.5254223-CDS-S-ischiensis_contig87:65294..657021622817350.5254223-CDS-S-ischiensis_contig87:65294..65702Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 65295..65702 +
1695741047.9419553-CDS-S-ischiensis_contig87:65294..657021695741047.9419553-CDS-S-ischiensis_contig87:65294..65702Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 65295..65702 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig87.20226.1

>prot_S-ischiensis_contig87.20226.1 ID=prot_S-ischiensis_contig87.20226.1|Name=mRNA_S-ischiensis_contig87.20226.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=136bp
MGLRIRLVGVLLVLLACTLSTAAWRVQWPRLGGPKRLGVIGRVSSPGLGG
GGQPPLKPHSWANEDWSFEPSPLGAGMVLAAQMADDSEAFQLPVGLREGG
VSLVWGYCSAVALKKAGEIGAASVGFLFIILQARA*
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mRNA from alignment at S-ischiensis_contig87:65270..65984+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig87.20226.1 ID=mRNA_S-ischiensis_contig87.20226.1|Name=mRNA_S-ischiensis_contig87.20226.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=715bp|location=Sequence derived from alignment at S-ischiensis_contig87:65270..65984+ (Schizocladia ischiensis KU_0333)
GCCTTGGCCTCGGCTTCCTGCCACGATGGGGCTGCGCATCCGGCTGGTTG
GCGTGCTGCTCGTTCTGTTAGCTTGTACACTCAGCACAGCAGCTTGGCGC
GTGCAGTGGCCGAGACTAGGGGGCCCCAAGAGACTGGGAGTGATTGGGAG
GGTGTCGTCCCCGGGCCTCGGCGGTGGTGGTCAGCCACCCTTGAAACCGC
ATTCTTGGGCCAATGAAGATTGGAGCTTCGAGCCAAGCCCACTTGGTGCG
GGCATGGTTCTGGCTGCTCAGATGGCGGACGATTCGGAAGCTTTCCAGCT
GCCTGTGGGACTCCGGGAGGGAGGGGTCTCGCTCGTTTGGGGATACTGCT
CTGCCGTCGCTCTCAAGAAAGCTGGCGAAATCGGAGCCGCCAGCGTCGGG
TTTTTGTTCATCATTCTACAGGCACGTGCTTGAATACAGGTTCACGGGAA
TGGTAGACTATGATCCTGTTGAGATCGTCTGCAGACAAGTTTTGGAATGA
GCGCACGCTGCTTCGCTGTGTCGGCGCTAGAGAGCGTAGCCGGGTGCCAC
TGGCAACGGCTTGCTCATCCCCCCCCACCCCATCGGGGGCTCTGTTAAAA
AGCGCCCCTCGCCCATTGGCGGCATGTTCCAGACACCGTCCATCCCACCC
AACAGCCAGAAGAGAACTGTGCACCTTTGTGACTATGAGCAATTACCGCC
GGCCCATCAACTGCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig87:65270..65984+

>mRNA_S-ischiensis_contig87.20226.1 ID=mRNA_S-ischiensis_contig87.20226.1|Name=mRNA_S-ischiensis_contig87.20226.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=816bp|location=Sequence derived from alignment at S-ischiensis_contig87:65270..65984+ (Schizocladia ischiensis KU_0333)
ATGGGGCTGCGCATCCGGCTGGTTGGCGTGCTGCTCGTTCTGTTAGCTTG
TACACTCAGCACAGCAGCTTGGCGCGTGCAGTGGCCGAGACTAGGGGGCC
CCAAGAGACTGGGAGTGATTGGGAGGGTGTCGTCCCCGGGCCTCGGCGGT
GGTGGTCAGCCACCCTTGAAACCGCATTCTTGGGCCAATGAAGATTGGAG
CTTCGAGCCAAGCCCACTTGGTGCGGGCATGGTTCTGGCTGCTCAGATGG
CGGACGATTCGGAAGCTTTCCAGCTGCCTGTGGGACTCCGGGAGGGAGGG
GTCTCGCTCGTTTGGGGATACTGCTCTGCCGTCGCTCTCAAGAAAGCTGG
CGAAATCGGAGCCGCCAGCGTCGGGTTTTTGTTCATCATTCTACAGGCAC
GTGCTTGAATGGGGCTGCGCATCCGGCTGGTTGGCGTGCTGCTCGTTCTG
TTAGCTTGTACACTCAGCACAGCAGCTTGGCGCGTGCAGTGGCCGAGACT
AGGGGGCCCCAAGAGACTGGGAGTGATTGGGAGGGTGTCGTCCCCGGGCC
TCGGCGGTGGTGGTCAGCCACCCTTGAAACCGCATTCTTGGGCCAATGAA
GATTGGAGCTTCGAGCCAAGCCCACTTGGTGCGGGCATGGTTCTGGCTGC
TCAGATGGCGGACGATTCGGAAGCTTTCCAGCTGCCTGTGGGACTCCGGG
AGGGAGGGGTCTCGCTCGTTTGGGGATACTGCTCTGCCGTCGCTCTCAAG
AAAGCTGGCGAAATCGGAGCCGCCAGCGTCGGGTTTTTGTTCATCATTCT
ACAGGCACGTGCTTGA
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