mRNA_S-ischiensis_contig87.20224.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig87.20224.1
Unique NamemRNA_S-ischiensis_contig87.20224.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig87.20224.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig87contigS-ischiensis_contig87:46313..46874 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size443
Cds size273
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig87.20224.1prot_S-ischiensis_contig87.20224.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig87 46482..46874 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817348.9748595-UTR-S-ischiensis_contig87:46312..464811622817348.9748595-UTR-S-ischiensis_contig87:46312..46481Schizocladia ischiensis KU_0333UTRS-ischiensis_contig87 46313..46481 +
1695741046.8892286-UTR-S-ischiensis_contig87:46312..464811695741046.8892286-UTR-S-ischiensis_contig87:46312..46481Schizocladia ischiensis KU_0333UTRS-ischiensis_contig87 46313..46481 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817348.989772-CDS-S-ischiensis_contig87:46481..465991622817348.989772-CDS-S-ischiensis_contig87:46481..46599Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 46482..46599 +
1695741046.9009972-CDS-S-ischiensis_contig87:46481..465991695741046.9009972-CDS-S-ischiensis_contig87:46481..46599Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 46482..46599 +
1622817349.0014393-CDS-S-ischiensis_contig87:46719..468741622817349.0014393-CDS-S-ischiensis_contig87:46719..46874Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 46720..46874 +
1695741046.9123678-CDS-S-ischiensis_contig87:46719..468741695741046.9123678-CDS-S-ischiensis_contig87:46719..46874Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 46720..46874 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig87.20224.1

>prot_S-ischiensis_contig87.20224.1 ID=prot_S-ischiensis_contig87.20224.1|Name=mRNA_S-ischiensis_contig87.20224.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=91bp
MFRRRKLGSNFSECPDHVCARQSGRGAEGLCTCRGIEVQGLSRTSGEAGF
PSSQQQQQQRQLRRPRLRQGQFRPWGGATCGRRHLWNACIG
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mRNA from alignment at S-ischiensis_contig87:46313..46874+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig87.20224.1 ID=mRNA_S-ischiensis_contig87.20224.1|Name=mRNA_S-ischiensis_contig87.20224.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=562bp|location=Sequence derived from alignment at S-ischiensis_contig87:46313..46874+ (Schizocladia ischiensis KU_0333)
CGCAGGTGTGACATCGGAGCCGGTTCCCCTTACCGACGTAGGAAAGGGTA
CACCAGGGACCGCACCCGGTATTGCCTGAGTTGCGCCGCTTCCAAGGCAC
GTCTCGAGTGGGGCGTCCCGCTTGTGCCCGCAGGAGCTTCGCGCGCTCGC
AAAAGCTTTCCCGGCTGAAATGTTCCGACGACGGAAATTGGGGAGCAACT
TCAGCGAGTGCCCGGATCATGTTTGCGCCAGGCAATCGGGTCGGGGCGCC
GAGGGACTGTGCACATGCCGTGGCATCGAAGTACAAGGTAAGTTCCGTCG
GGAACCGACGGCAATAGCGAGTGCGGGACTCTCGTTCATGATTCTCTGCT
CGCCCCGGCATGTCTTTGACTCGCCCCGCGCGGCCCGGCCCCACCTTACT
GCCCAAGGTTTATCGCGCACCTCGGGGGAAGCAGGGTTCCCTTCCTCCCA
GCAGCAGCAGCAGCAGAGGCAGTTGCGGCGGCCACGGCTGCGGCAGGGCC
AATTCCGGCCATGGGGCGGGGCCACCTGCGGCCGGCGGCACCTTTGGAAT
GCGTGCATAGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig87:46313..46874+

>mRNA_S-ischiensis_contig87.20224.1 ID=mRNA_S-ischiensis_contig87.20224.1|Name=mRNA_S-ischiensis_contig87.20224.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=546bp|location=Sequence derived from alignment at S-ischiensis_contig87:46313..46874+ (Schizocladia ischiensis KU_0333)
ATGTTCCGACGACGGAAATTGGGGAGCAACTTCAGCGAGTGCCCGGATCA
TGTTTGCGCCAGGCAATCGGGTCGGGGCGCCGAGGGACTGTGCACATGCC
GTGGCATCGAAGTACAAGATGTTCCGACGACGGAAATTGGGGAGCAACTT
CAGCGAGTGCCCGGATCATGTTTGCGCCAGGCAATCGGGTCGGGGCGCCG
AGGGACTGTGCACATGCCGTGGCATCGAAGTACAAGGTTTATCGCGCACC
TCGGGGGAAGCAGGGTTCCCTTCCTCCCAGCAGCAGCAGCAGCAGAGGCA
GTTGCGGCGGCCACGGCTGCGGCAGGGCCAATTCCGGCCATGGGGCGGGG
CCACCTGCGGCCGGCGGCACCTTTGGAATGCGTGCATAGGCGTTTATCGC
GCACCTCGGGGGAAGCAGGGTTCCCTTCCTCCCAGCAGCAGCAGCAGCAG
AGGCAGTTGCGGCGGCCACGGCTGCGGCAGGGCCAATTCCGGCCATGGGG
CGGGGCCACCTGCGGCCGGCGGCACCTTTGGAATGCGTGCATAGGC
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