mRNA_S-ischiensis_contig87.20217.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig87.20217.1
Unique NamemRNA_S-ischiensis_contig87.20217.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig87.20217.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig87contigS-ischiensis_contig87:2808..3359 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size234
Cds size225
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig87.20217.1prot_S-ischiensis_contig87.20217.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig87 2808..3350 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817348.871677-CDS-S-ischiensis_contig87:2807..29151622817348.871677-CDS-S-ischiensis_contig87:2807..2915Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 2808..2915 -
1695741046.8325706-CDS-S-ischiensis_contig87:2807..29151695741046.8325706-CDS-S-ischiensis_contig87:2807..2915Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 2808..2915 -
1622817348.8834484-CDS-S-ischiensis_contig87:3233..33501622817348.8834484-CDS-S-ischiensis_contig87:3233..3350Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 3234..3350 -
1695741046.8439078-CDS-S-ischiensis_contig87:3233..33501695741046.8439078-CDS-S-ischiensis_contig87:3233..3350Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 3234..3350 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817348.8947685-UTR-S-ischiensis_contig87:3350..33591622817348.8947685-UTR-S-ischiensis_contig87:3350..3359Schizocladia ischiensis KU_0333UTRS-ischiensis_contig87 3351..3359 -
1695741046.8552482-UTR-S-ischiensis_contig87:3350..33591695741046.8552482-UTR-S-ischiensis_contig87:3350..3359Schizocladia ischiensis KU_0333UTRS-ischiensis_contig87 3351..3359 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig87.20217.1

>prot_S-ischiensis_contig87.20217.1 ID=prot_S-ischiensis_contig87.20217.1|Name=mRNA_S-ischiensis_contig87.20217.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=75bp
MSHTCGSGQVCDSTSREATCKCAYGLAPGVSRRGNPFALSTRATRACYHS
SGPVSVWPMALNCPSLTQPWWESWA
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mRNA from alignment at S-ischiensis_contig87:2808..3359-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig87.20217.1 ID=mRNA_S-ischiensis_contig87.20217.1|Name=mRNA_S-ischiensis_contig87.20217.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=552bp|location=Sequence derived from alignment at S-ischiensis_contig87:2808..3359- (Schizocladia ischiensis KU_0333)
GACCCGTGCATGTCGCACACTTGTGGATCTGGACAGGTCTGTGACAGCAC
GAGCCGAGAGGCCACGTGCAAGTGCGCTTACGGTCTGGCCCCAGGCGTCA
GCCGGCGGGGGAACCCATTTGCGTTGGTGAGTGGTTGGGGACTATACACC
ATGGGGCCAGCAAGGCATGGACACGGAACCCGACGTGTGAACCCGGGCTA
CCCTCCCTGCCTGCCCCTCCTGCCGCTTGATGCCTGCCCGTACACGCTCC
AGGATTGGTTGAGTGATGACACATCGTACTTGCCTTGTTGTTTGCCCCAC
CCTACTCGGTCTCGAGCCCGTCTGTTGGCCGTTGGGGGGCATAGCCCAGT
TGTCCATGCCACAACGCGCACGTCCCTGCACTGGTCAATGGCGTTGCTCT
GCCTGCTGTGCCCCCTTTCCCCCCCGTGGACCCCGGTGCCTCAGTCAACA
CGTGCGACACGCGCGTGCTATCACTCCTCGGGCCCTGTAAGCGTGTGGCC
CATGGCTCTAAACTGCCCGAGCCTGACTCAGCCTTGGTGGGAGAGCTGGG
CA
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Coding sequence (CDS) from alignment at S-ischiensis_contig87:2808..3359-

>mRNA_S-ischiensis_contig87.20217.1 ID=mRNA_S-ischiensis_contig87.20217.1|Name=mRNA_S-ischiensis_contig87.20217.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=450bp|location=Sequence derived from alignment at S-ischiensis_contig87:2808..3359- (Schizocladia ischiensis KU_0333)
ATGTCGCACACTTGTGGATCTGGACAGGTCTGTGACAGCACGAGCCGAGA
GGCCACGTGCAAGTGCGCTTACGGTCTGGCCCCAGGCGTCAGCCGGCGGG
GGAACCCATTTGCGTTGATGTCGCACACTTGTGGATCTGGACAGGTCTGT
GACAGCACGAGCCGAGAGGCCACGTGCAAGTGCGCTTACGGTCTGGCCCC
AGGCGTCAGCCGGCGGGGGAACCCATTTGCGTTGTCAACACGTGCGACAC
GCGCGTGCTATCACTCCTCGGGCCCTGTAAGCGTGTGGCCCATGGCTCTA
AACTGCCCGAGCCTGACTCAGCCTTGGTGGGAGAGCTGGGCATCAACACG
TGCGACACGCGCGTGCTATCACTCCTCGGGCCCTGTAAGCGTGTGGCCCA
TGGCTCTAAACTGCCCGAGCCTGACTCAGCCTTGGTGGGAGAGCTGGGCA
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