mRNA_S-ischiensis_contig86.20213.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig86.20213.1
Unique NamemRNA_S-ischiensis_contig86.20213.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig86.20213.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig86contigS-ischiensis_contig86:511137..512062 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size493
Cds size489
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817346.4771326-CDS-S-ischiensis_contig86:511136..5113961622817346.4771326-CDS-S-ischiensis_contig86:511136..511396Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 511137..511396 +
1695741044.9122815-CDS-S-ischiensis_contig86:511136..5113961695741044.9122815-CDS-S-ischiensis_contig86:511136..511396Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 511137..511396 +
1622817346.4919693-CDS-S-ischiensis_contig86:511831..5120601622817346.4919693-CDS-S-ischiensis_contig86:511831..512060Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 511832..512060 +
1695741044.9264135-CDS-S-ischiensis_contig86:511831..5120601695741044.9264135-CDS-S-ischiensis_contig86:511831..512060Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 511832..512060 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig86.20213.1prot_S-ischiensis_contig86.20213.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig86 511137..512060 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig86.20213.1

>prot_S-ischiensis_contig86.20213.1 ID=prot_S-ischiensis_contig86.20213.1|Name=mRNA_S-ischiensis_contig86.20213.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=163bp
GERVGRCAPDQASADLGGESMEKTQGGQGGHAVEHVHEGPVSHGGGDNGP
NTGSALTNSSDCGEDSDTDGEEGTDSGCSPLPFNMSRRAKGNLPVDIQRP
PSNPRTPSIRNALYELAPTPTWGDATSVSSAGSSLQSPMSAQLVAAPSTP
TIASGPAGVDKRH
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mRNA from alignment at S-ischiensis_contig86:511137..512062+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig86.20213.1 ID=mRNA_S-ischiensis_contig86.20213.1|Name=mRNA_S-ischiensis_contig86.20213.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=926bp|location=Sequence derived from alignment at S-ischiensis_contig86:511137..512062+ (Schizocladia ischiensis KU_0333)
GGCGAGAGGGTGGGGCGGTGTGCCCCGGACCAGGCGAGCGCGGACCTGGG
TGGGGAAAGCATGGAGAAGACCCAGGGCGGGCAAGGGGGGCATGCGGTGG
AGCATGTGCATGAGGGACCAGTCAGCCACGGCGGTGGTGACAATGGCCCC
AACACGGGCAGTGCTTTAACCAACTCAAGCGACTGCGGCGAGGACAGCGA
CACAGATGGCGAGGAGGGCACCGACAGCGGTTGTTCCCCACTCCCATTCA
ACATGAGCCGGTGCGTTCGATTTTCTGTTGTTCTTCTTGCATGTTTGCCG
CGGGCTGCATCACGGACTCGCTGGTGCTGTGCGTGCAATACGTGAAGTGG
TTGGTGCTGCGGTTTTCTTTTAACAATAGCTCCATTGGTACGGCAGGAAG
TGCGTATTCTTGTTTGTTCCTGTGCTGCTGCACTCAGGTCTCGGTCGGAG
AGTGTGATGTTGTGCTTGCCATTGTCCTCAGATCATTGAAGCACTGTATG
TAAGTGACTGTATCTCTACTGCAGTACCGTAGCCTAACCTCTCATCGAGG
CTTTGGCCGAAAGATGTTTTGGGGAGGGGGACGATAAGAGGGTGTTGCAC
GCCCTCTGCAGGCGGGTGAGGACACGCCACCTTCCAACCCCTCTGCCCCC
TGCCTGCCCAACCATTGTTTGTTGTGCCCTCTGTCCCTCAAACAGGCGTG
CCAAGGGGAATCTCCCAGTGGACATCCAGCGCCCGCCGTCCAACCCCCGC
ACGCCCTCCATCCGCAATGCGCTCTACGAGCTCGCTCCCACCCCGACCTG
GGGCGACGCGACCTCTGTGTCTTCGGCGGGCTCCTCTCTGCAGTCACCCA
TGTCGGCCCAGCTTGTGGCGGCACCCTCTACCCCCACCATTGCCAGTGGG
CCCGCAGGGGTGGACAAACGTCATTT
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Coding sequence (CDS) from alignment at S-ischiensis_contig86:511137..512062+

>mRNA_S-ischiensis_contig86.20213.1 ID=mRNA_S-ischiensis_contig86.20213.1|Name=mRNA_S-ischiensis_contig86.20213.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=978bp|location=Sequence derived from alignment at S-ischiensis_contig86:511137..512062+ (Schizocladia ischiensis KU_0333)
GGCGAGAGGGTGGGGCGGTGTGCCCCGGACCAGGCGAGCGCGGACCTGGG
TGGGGAAAGCATGGAGAAGACCCAGGGCGGGCAAGGGGGGCATGCGGTGG
AGCATGTGCATGAGGGACCAGTCAGCCACGGCGGTGGTGACAATGGCCCC
AACACGGGCAGTGCTTTAACCAACTCAAGCGACTGCGGCGAGGACAGCGA
CACAGATGGCGAGGAGGGCACCGACAGCGGTTGTTCCCCACTCCCATTCA
ACATGAGCCGGGCGAGAGGGTGGGGCGGTGTGCCCCGGACCAGGCGAGCG
CGGACCTGGGTGGGGAAAGCATGGAGAAGACCCAGGGCGGGCAAGGGGGG
CATGCGGTGGAGCATGTGCATGAGGGACCAGTCAGCCACGGCGGTGGTGA
CAATGGCCCCAACACGGGCAGTGCTTTAACCAACTCAAGCGACTGCGGCG
AGGACAGCGACACAGATGGCGAGGAGGGCACCGACAGCGGTTGTTCCCCA
CTCCCATTCAACATGAGCCGGCGTGCCAAGGGGAATCTCCCAGTGGACAT
CCAGCGCCCGCCGTCCAACCCCCGCACGCCCTCCATCCGCAATGCGCTCT
ACGAGCTCGCTCCCACCCCGACCTGGGGCGACGCGACCTCTGTGTCTTCG
GCGGGCTCCTCTCTGCAGTCACCCATGTCGGCCCAGCTTGTGGCGGCACC
CTCTACCCCCACCATTGCCAGTGGGCCCGCAGGGGTGGACAAACGTCATG
CGTGCCAAGGGGAATCTCCCAGTGGACATCCAGCGCCCGCCGTCCAACCC
CCGCACGCCCTCCATCCGCAATGCGCTCTACGAGCTCGCTCCCACCCCGA
CCTGGGGCGACGCGACCTCTGTGTCTTCGGCGGGCTCCTCTCTGCAGTCA
CCCATGTCGGCCCAGCTTGTGGCGGCACCCTCTACCCCCACCATTGCCAG
TGGGCCCGCAGGGGTGGACAAACGTCAT
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