mRNA_S-ischiensis_contig86.20210.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig86.20210.1 vs. uniprot
Match: D8LG45_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG45_ECTSI) HSP 1 Score: 97.8 bits (242), Expect = 1.760e-18 Identity = 74/190 (38.95%), Postives = 100/190 (52.63%), Query Frame = 2
Query: 668 ALPHRARRGW-RLVAYLGVIAFRTLGLYTGLGLLEGCLQPQTARDTDCWYAHLRRSGICAGAYFDTADHVILALCQFLCIQAVETFGLLSEWRARRRWRRRWGAGGQASQHP------------GGXXSRDGGALLLQAARVSALLA---CVAVSVAALAMCYDTVSFFHTRGESMVALAVSAAAVWWPL 1189
A P R R W R + Y+ VI RTLGLY GL ++G +Q + + ++CWYAHLRRSG C+ +FD ADHV+LA+CQ+ IQ E +L E+ R +G Q P XX L + +S L A C AV+ AAL + YDT + FH+R E++ AL +S V PL
Sbjct: 107 ATPSRTRARWNRFLLYVAVILGRTLGLYLGLNYIQGLVQSEES--SNCWYAHLRRSGKCS-EHFDFADHVVLAVCQYYAIQVFELCCILREYGDFSRQAAAIASGLQRKPSPTPSXXXXXXXXXXXXXXXXXXXXLRPSPFLSVLPAAAVCAAVAGAALLLVYDTAALFHSRAETVAALVISWFVVGEPL 293
BLAST of mRNA_S-ischiensis_contig86.20210.1 vs. uniprot
Match: W7TJS9_9STRA (Uncharacterized protein n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJS9_9STRA) HSP 1 Score: 66.6 bits (161), Expect = 6.370e-8 Identity = 55/164 (33.54%), Postives = 76/164 (46.34%), Query Frame = 2
Query: 698 RLVAYLGVIAFRTLGLYTGLGLLEGCLQPQTARDTDCWYAHLRRSGICAGAYFDTADHVILALCQFLCIQAVETFGLLSEWRARRRWRRRWGAGGQASQHPGGXXSRDGGALLLQAARVSALLACVAVSVAALAMCYDTVSFFHTRGESMVALAVSAAAVWWPL 1189
RL Y VI FRT L L ++ +Q + DT CWY+ LR G C FD ADH +L + Q+L IQ ET +L E R+ LL V+ L + +S+ +L YDTV++FHTR ES++ + +S V PL
Sbjct: 201 RLGLYAAVIMFRTAVLLMLLNRVQAWVQAEEG-DT-CWYSALRHDGRCRER-FDFADHGVLFISQYLAIQTFETVAILREARS-----------------------------LLHL--VTCLASACLISLLSLVGFYDTVTYFHTRTESLMGVLISLVTVQLPL 330
BLAST of mRNA_S-ischiensis_contig86.20210.1 vs. uniprot
Match: A0A833SRV2_PHYIN (Uncharacterized protein n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833SRV2_PHYIN) HSP 1 Score: 64.7 bits (156), Expect = 1.800e-7 Identity = 56/170 (32.94%), Postives = 77/170 (45.29%), Query Frame = 2
Query: 686 RRGWRLVAYLGVIAFRTLGLYTGLGLLEGCLQPQTARDTD--CWYAHLRRSGICAGAYFDTADHVILALCQFLCIQAVETFGLLSEWRARRRWRRRWGAGGQASQHPGGXXSRDGGALLLQAARVSALLACVAVSVAALAMCYDTVSFFHTRGESMVALAVSAAAVWWPL 1189
RRG + Y+ V+AFRT+ LY GLGL+E L +D CWYA LRR C A FD +DH++L + +L I E F + E S P L+ + A L CV A + + T S+FHT E++V L ++ V PL
Sbjct: 137 RRG---LLYVAVMAFRTVALYMGLGLIEKRLIHLFMGHSDHSCWYADLRRGKRCP-ANFDHSDHIVLLVGHYLAISLFEWFAVSVE-----------------SAGPS-----------LKRTLLRAWLICV--GALATYLLFFTASYFHTAAENLVGLIIAQGCVMAPL 272
BLAST of mRNA_S-ischiensis_contig86.20210.1 vs. uniprot
Match: A0A0P1AGP8_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AGP8_PLAHL) HSP 1 Score: 63.9 bits (154), Expect = 3.170e-7 Identity = 34/81 (41.98%), Postives = 48/81 (59.26%), Query Frame = 2
Query: 686 RRGWRLVAYLGVIAFRTLGLYTGLGLLEGCLQPQTARDTDCWYAHLRRSGICAGAYFDTADHVILALCQFLCIQAVETFGL 928
RRG + Y+ V+AFRT+ LY GLGL+E + T R + CWYA LR C A FD +DH++L + ++ I E F +
Sbjct: 137 RRG---LLYVAVMAFRTVVLYIGLGLIEERMLHLTGRSSSCWYADLRHGKRCP-ANFDHSDHIVLLVSHYMAIPLFEWFAV 213
BLAST of mRNA_S-ischiensis_contig86.20210.1 vs. uniprot
Match: W2PVG2_PHYPN (Uncharacterized protein n=11 Tax=Phytophthora TaxID=4783 RepID=W2PVG2_PHYPN) HSP 1 Score: 62.0 bits (149), Expect = 1.380e-6 Identity = 52/170 (30.59%), Postives = 75/170 (44.12%), Query Frame = 2
Query: 686 RRGWRLVAYLGVIAFRTLGLYTGLGLLEGCLQPQTARDTD--CWYAHLRRSGICAGAYFDTADHVILALCQFLCIQAVETFGLLSEWRARRRWRRRWGAGGQASQHPGGXXSRDGGALLLQAARVSALLACVAVSVAALAMCYDTVSFFHTRGESMVALAVSAAAVWWPL 1189
RRG + Y+ ++AFRT+ LY GLGL+E L +D CWYA LRR C A FD +DH++L + +L I E F + E G +L R ++ C S + + T S+FHT E++V L ++ V PL
Sbjct: 137 RRG---LLYVAIMAFRTVVLYMGLGLVEKRLIHLFMGHSDHSCWYAELRRGKRCP-ADFDHSDHIVLLVSHYLAIPLFEWFAVSVE--------------------------SAGPSLKRTLLRAWLIIVCGMASY----LLFFTASYFHTTAENLVGLIIAQGCVMAPL 272
BLAST of mRNA_S-ischiensis_contig86.20210.1 vs. uniprot
Match: A0A4D9CR10_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CR10_9STRA) HSP 1 Score: 59.3 bits (142), Expect = 1.640e-5 Identity = 53/175 (30.29%), Postives = 76/175 (43.43%), Query Frame = 2
Query: 698 RLVAYLGVIAFRTLGLYTGLGLLE----GCLQPQTARD-------TDCWYAHLRRSGICAGAYFDTADHVILALCQFLCIQAVETFGLLSEWRARRRWRRRWGAGGQASQHPGGXXSRDGGALLLQAARVSALLACVAVSVAALAMCYDTVSFFHTRGESMVALAVSAAAVWWPL 1189
RL Y VI FRT L L ++ G + ++ R+ CWY+ LR C FD ADH +L + Q+L IQ ET +L E R+ LL V+ L + +S+ +L YDTV++FHTR ES++ + +S V PL
Sbjct: 214 RLGLYAAVIMFRTTVLLMLLNRVQAWVQGVMPEESGREGGRAEEGDTCWYSALRHDRRCRER-FDFADHGVLFISQYLAIQTFETVAILREARS-----------------------------LLHL--VTCLTSACLISLLSLVGFYDTVTYFHTRTESLMGVLISLVTVQLPL 356 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig86.20210.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig86.20210.1 >prot_S-ischiensis_contig86.20210.1 ID=prot_S-ischiensis_contig86.20210.1|Name=mRNA_S-ischiensis_contig86.20210.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=213bp MCVLYCNVLWFDGISHQDLSDEYGMHCTNALPHRARRGWRLVAYLGVIAFback to top mRNA from alignment at S-ischiensis_contig86:471915..475853+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig86.20210.1 ID=mRNA_S-ischiensis_contig86.20210.1|Name=mRNA_S-ischiensis_contig86.20210.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3939bp|location=Sequence derived from alignment at S-ischiensis_contig86:471915..475853+ (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig86:471915..475853+ >mRNA_S-ischiensis_contig86.20210.1 ID=mRNA_S-ischiensis_contig86.20210.1|Name=mRNA_S-ischiensis_contig86.20210.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1278bp|location=Sequence derived from alignment at S-ischiensis_contig86:471915..475853+ (Schizocladia ischiensis KU_0333)back to top |