mRNA_S-ischiensis_contig86.20208.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig86.20208.1
Unique NamemRNA_S-ischiensis_contig86.20208.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig86.20208.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig86contigS-ischiensis_contig86:454574..456417 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size337
Cds size336
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817346.2988398-CDS-S-ischiensis_contig86:454574..4547161622817346.2988398-CDS-S-ischiensis_contig86:454574..454716Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 454575..454716 -
1695741044.765332-CDS-S-ischiensis_contig86:454574..4547161695741044.765332-CDS-S-ischiensis_contig86:454574..454716Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 454575..454716 -
1622817346.311191-CDS-S-ischiensis_contig86:456223..4564171622817346.311191-CDS-S-ischiensis_contig86:456223..456417Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 456224..456417 -
1695741044.7786167-CDS-S-ischiensis_contig86:456223..4564171695741044.7786167-CDS-S-ischiensis_contig86:456223..456417Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 456224..456417 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig86.20208.1prot_S-ischiensis_contig86.20208.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig86 454575..456417 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig86.20208.1

>prot_S-ischiensis_contig86.20208.1 ID=prot_S-ischiensis_contig86.20208.1|Name=mRNA_S-ischiensis_contig86.20208.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=112bp
RPVSRTPHQGPPAPGAQWWRRHWRQRRRQRRHGDRPAEGTVLRPEGSAAK
PVRLGRVGQGGVPLCKQRDRVPPHHPNCRNLFCHRGRRRLHFCRLRHLIG
PCNPVRCRRCHR
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mRNA from alignment at S-ischiensis_contig86:454574..456417-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig86.20208.1 ID=mRNA_S-ischiensis_contig86.20208.1|Name=mRNA_S-ischiensis_contig86.20208.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1844bp|location=Sequence derived from alignment at S-ischiensis_contig86:454574..456417- (Schizocladia ischiensis KU_0333)
AGGCCTGTATCCCGGACTCCTCACCAGGGGCCGCCAGCCCCCGGGGCACA
GTGGTGGCGGCGGCACTGGCGGCAGCGGCGGAGGCAGCGGCGTCATGGCG
ACAGACCGGCGGAGGGCACGGTCCTTCGGCCCGAGGGATCTGCGGCGAAG
CCCGTCCGGCTCGGGCGGGTTGGACAGGGCGGTGTCCCCCTCTGGTGAGG
GTTTCGATGGATATCGACGTTGTTTTGATGTGTTTATGAAAGGCCTTGGG
TGGCTTTGCCAGGGGCGGGAGGGCCTGCTCCATCTCTTGGTGCGGCACTT
TTCGAGGGCAATCAACCCGTGTGCCTACAAACACATTTGGCGCTTGTCAA
TCGCGAGCAATTCCGGGTCCCCCAACACAGAAGCCCTTCCTTCCCTTGCA
GGGCATGTAGAAAAAGAACGGGGGGGAGAACGAAGAGAGAAACCTGCGCC
GTTCCACGTGAACTCCCCCGGCGAGCAAAGGAAGGTCCATGCTCCAGGTC
CTTGGTGTCTTGGTTTCTTCTCTCATGGGATGTGGTGTCATGTGTAACTG
CTGAGTGCGCACGGTGGAGGTCCTTGGTGATGCGATCGCGTCGCCCTTAT
ATGTTCCTTTTCTCTGATGTGACGAGAAACATTATCCCGAACACTGTCCT
GGCGGGGGGGGTGTCTCTCCGAACTGTGCTGCAGAACTTGTGCGCGTACT
CGAGTACATGCGGAGCCCGCCTAGCCGTGCGATTCCCTGCCGTTTAATAG
TGTACTACGAAGTACATAGCTCACGTGCTGTAGTGACAGTGAGGGTCTTG
CATTGCGTCTCAGAGCATGCACTACCGCAATCGGCGCAAGGGTGTTGCAC
GCAAAATGTAGAGAACGGGCGGCGAGTTTGCTACACGAACTTCTGGAGGC
AAGAACTCAACGACGTGCAAGAACTCTATTTCATTGGCTGGTCGGGCCCC
AAGTTTGGTACACCTTCTTCCCGAGGGCAACGCCCCCGTCGGGCAAAATC
CAATGACAAGTTTTGGCGCAACACAGCGGACAGCGAATGTCGGGGGCGGC
ATGGCCGATCCGGAGGGGGAAGCGGGCACCAGGCGTCCCTGCCCCACCGC
CGTTCGAGCTGAAATACCGACAGGGAGGCAAGTTAAGAAGAGAATCTTCG
ACCTTGACGCGAAAATCGTGGTAGCCAAGCATGCCCTCGAGAACGTCGAG
GGGGGGAAGCGGGCACCAAGCGCCCTGCCCCGCCGCCGCTCAAGCTGAAG
TACCAACAGAGAGGCAAGCTTAAGAAGAGAACCTTCGACCTTCACACGCA
AATCGCGGTAGCCAAGCATGCCCTCGACTCGAGAAGGTCGAGGGGGCGCG
GGGCAAACGTGGGAGGGGGTGCAAAATCTCTAAGACGACGCAAAATACAC
GCAAGCAAAAACTGGGAAGGGGGGGCAAGAACTCAACGACGTGCAAGAAC
TTTAAATCTAGCTAAGCACATTGCTTGTTAAAACCAATTTTGCGGCAAGA
ACTTAAAGGAGACCACATCGGCCGAGACGGAGCAGCCGCTCTCCCTTCCC
TGGCTATGTCGGAGGGGGGGCGGCTAAGTAGACAGCGTGCGCCCACCGTT
CGTGCTCACACTATCGTTGTACAAGATTTCCACTGCGGCACAGTACAGTA
GCATTCAAGAAGTGCCGCCTCATGTGCCACCCCCCCCCCCCCCCCCCCCA
GCAAACAGCGCGACCGGGTCCCGCCCCACCACCCCAACTGCCGCAACCTC
TTCTGCCACCGTGGCCGCCGCCGGCTCCACTTCTGCCGCCTCCGCCACCT
CATCGGCCCCTGCAACCCCGTCCGGTGCCGCCGGTGCCACAGAA
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Coding sequence (CDS) from alignment at S-ischiensis_contig86:454574..456417-

>mRNA_S-ischiensis_contig86.20208.1 ID=mRNA_S-ischiensis_contig86.20208.1|Name=mRNA_S-ischiensis_contig86.20208.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=672bp|location=Sequence derived from alignment at S-ischiensis_contig86:454574..456417- (Schizocladia ischiensis KU_0333)
AGGCCTGTATCCCGGACTCCTCACCAGGGGCCGCCAGCCCCCGGGGCACA
GTGGTGGCGGCGGCACTGGCGGCAGCGGCGGAGGCAGCGGCGTCATGGCG
ACAGACCGGCGGAGGGCACGGTCCTTCGGCCCGAGGGATCTGCGGCGAAG
CCCGTCCGGCTCGGGCGGGTTGGACAGGGCGGTGTCCCCCTCTGAGGCCT
GTATCCCGGACTCCTCACCAGGGGCCGCCAGCCCCCGGGGCACAGTGGTG
GCGGCGGCACTGGCGGCAGCGGCGGAGGCAGCGGCGTCATGGCGACAGAC
CGGCGGAGGGCACGGTCCTTCGGCCCGAGGGATCTGCGGCGAAGCCCGTC
CGGCTCGGGCGGGTTGGACAGGGCGGTGTCCCCCTCTGCAAACAGCGCGA
CCGGGTCCCGCCCCACCACCCCAACTGCCGCAACCTCTTCTGCCACCGTG
GCCGCCGCCGGCTCCACTTCTGCCGCCTCCGCCACCTCATCGGCCCCTGC
AACCCCGTCCGGTGCCGCCGGTGCCACAGACAAACAGCGCGACCGGGTCC
CGCCCCACCACCCCAACTGCCGCAACCTCTTCTGCCACCGTGGCCGCCGC
CGGCTCCACTTCTGCCGCCTCCGCCACCTCATCGGCCCCTGCAACCCCGT
CCGGTGCCGCCGGTGCCACAGA
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