mRNA_S-ischiensis_contig86.20207.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig86.20207.1
Unique NamemRNA_S-ischiensis_contig86.20207.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig86.20207.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig86contigS-ischiensis_contig86:453535..454220 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size686
Cds size465
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig86.20207.1prot_S-ischiensis_contig86.20207.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig86 453552..454016 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817346.7374806-UTR-S-ischiensis_contig86:453534..4535511622817346.7374806-UTR-S-ischiensis_contig86:453534..453551Schizocladia ischiensis KU_0333UTRS-ischiensis_contig86 453535..453551 +
1695741045.062577-UTR-S-ischiensis_contig86:453534..4535511695741045.062577-UTR-S-ischiensis_contig86:453534..453551Schizocladia ischiensis KU_0333UTRS-ischiensis_contig86 453535..453551 +
1622817346.760438-UTR-S-ischiensis_contig86:454016..4542201622817346.760438-UTR-S-ischiensis_contig86:454016..454220Schizocladia ischiensis KU_0333UTRS-ischiensis_contig86 454017..454220 +
1695741045.0980654-UTR-S-ischiensis_contig86:454016..4542201695741045.0980654-UTR-S-ischiensis_contig86:454016..454220Schizocladia ischiensis KU_0333UTRS-ischiensis_contig86 454017..454220 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817346.74856-CDS-S-ischiensis_contig86:453551..4540161622817346.74856-CDS-S-ischiensis_contig86:453551..454016Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 453552..454016 +
1695741045.0799263-CDS-S-ischiensis_contig86:453551..4540161695741045.0799263-CDS-S-ischiensis_contig86:453551..454016Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 453552..454016 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig86.20207.1

>prot_S-ischiensis_contig86.20207.1 ID=prot_S-ischiensis_contig86.20207.1|Name=mRNA_S-ischiensis_contig86.20207.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=155bp
MRTHTAHLRHTYDNDYMVGGCARTNFYTAPCAACVVPRPIQTGLLLLLFS
SPLVALTRALPLLHYSYSSNSKQGNTSVLCARPLAQVHSKQERRPRPAHG
SLRDQQAYHSKYFEAQYIPRVPLTPPSPHREANSARACSTCAFLAAAAAS
PVGA*
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mRNA from alignment at S-ischiensis_contig86:453535..454220+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig86.20207.1 ID=mRNA_S-ischiensis_contig86.20207.1|Name=mRNA_S-ischiensis_contig86.20207.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=686bp|location=Sequence derived from alignment at S-ischiensis_contig86:453535..454220+ (Schizocladia ischiensis KU_0333)
CCCGCACACGCGCATACATGCGCACACACACAGCCCACCTGAGACATACA
TACGACAACGACTACATGGTCGGGGGGTGTGCGCGCACGAATTTCTATAC
AGCCCCATGCGCAGCATGCGTAGTGCCGCGCCCTATCCAAACAGGGCTGC
TGCTGCTGCTGTTTTCTTCGCCCCTTGTCGCACTCACGCGTGCATTGCCT
TTACTACACTACTCGTACAGTAGCAACTCCAAGCAGGGGAACACCTCGGT
GTTGTGTGCGCGCCCCCTTGCCCAAGTTCACAGCAAGCAAGAGCGGCGCC
CCCGCCCGGCCCATGGCAGCCTCCGCGACCAGCAGGCGTACCACTCTAAG
TATTTCGAAGCACAGTACATACCGAGGGTCCCTTTGACGCCTCCCTCCCC
TCACAGAGAGGCAAACTCGGCCAGGGCCTGCAGCACCTGTGCCTTCCTCG
CCGCCGCCGCTGCCTCCCCCGTCGGAGCCTAGTCGGAGCCTAGAGCAGTG
GTGTTCTCCTCCCTTCACATGAGAAAACTCGGCCAGGGCCCGCAGCACCC
GTGCTTCCCTCACCTCGCCGCCGCCGTCGCCACCGCCGCCGCCGCCGCCG
CCGCCGGAGCGTGAGCGTGTGCTACAACGCGAAAAAGTCGGCCAGGTTCC
GCAGCAGATGCGCCTCGCGCCCCGCCACCACCGCTG
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Coding sequence (CDS) from alignment at S-ischiensis_contig86:453535..454220+

>mRNA_S-ischiensis_contig86.20207.1 ID=mRNA_S-ischiensis_contig86.20207.1|Name=mRNA_S-ischiensis_contig86.20207.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=930bp|location=Sequence derived from alignment at S-ischiensis_contig86:453535..454220+ (Schizocladia ischiensis KU_0333)
ATGCGCACACACACAGCCCACCTGAGACATACATACGACAACGACTACAT
GGTCGGGGGGTGTGCGCGCACGAATTTCTATACAGCCCCATGCGCAGCAT
GCGTAGTGCCGCGCCCTATCCAAACAGGGCTGCTGCTGCTGCTGTTTTCT
TCGCCCCTTGTCGCACTCACGCGTGCATTGCCTTTACTACACTACTCGTA
CAGTAGCAACTCCAAGCAGGGGAACACCTCGGTGTTGTGTGCGCGCCCCC
TTGCCCAAGTTCACAGCAAGCAAGAGCGGCGCCCCCGCCCGGCCCATGGC
AGCCTCCGCGACCAGCAGGCGTACCACTCTAAGTATTTCGAAGCACAGTA
CATACCGAGGGTCCCTTTGACGCCTCCCTCCCCTCACAGAGAGGCAAACT
CGGCCAGGGCCTGCAGCACCTGTGCCTTCCTCGCCGCCGCCGCTGCCTCC
CCCGTCGGAGCCTAGATGCGCACACACACAGCCCACCTGAGACATACATA
CGACAACGACTACATGGTCGGGGGGTGTGCGCGCACGAATTTCTATACAG
CCCCATGCGCAGCATGCGTAGTGCCGCGCCCTATCCAAACAGGGCTGCTG
CTGCTGCTGTTTTCTTCGCCCCTTGTCGCACTCACGCGTGCATTGCCTTT
ACTACACTACTCGTACAGTAGCAACTCCAAGCAGGGGAACACCTCGGTGT
TGTGTGCGCGCCCCCTTGCCCAAGTTCACAGCAAGCAAGAGCGGCGCCCC
CGCCCGGCCCATGGCAGCCTCCGCGACCAGCAGGCGTACCACTCTAAGTA
TTTCGAAGCACAGTACATACCGAGGGTCCCTTTGACGCCTCCCTCCCCTC
ACAGAGAGGCAAACTCGGCCAGGGCCTGCAGCACCTGTGCCTTCCTCGCC
GCCGCCGCTGCCTCCCCCGTCGGAGCCTAG
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